Wall clock time and date at job start Tue Mar 31 2020 11:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38286 * 119.94545 * 2 1 4 4 C 1.38122 * 120.05886 * 179.97438 * 3 2 1 5 5 C 1.38755 * 119.94450 * 0.02562 * 4 3 2 6 6 O 1.35898 * 120.05613 * 180.02562 * 5 4 3 7 7 C 1.42896 * 117.00409 * 5.12521 * 6 5 4 8 8 C 1.53119 * 109.52573 * 275.51723 * 7 6 5 9 9 C 1.53042 * 109.27741 * 182.50080 * 8 7 6 10 10 N 1.46847 * 109.57143 * 59.08239 * 9 8 7 11 11 C 1.46897 * 110.99588 * 174.19267 * 10 9 8 12 12 H 1.09005 * 109.47517 * 174.10590 * 11 10 9 13 13 C 1.53002 * 109.47484 * 54.10797 * 11 10 9 14 14 C 1.52998 * 109.47304 * 294.10599 * 11 10 9 15 15 C 1.50702 * 109.47279 * 297.55188 * 14 11 10 16 16 H 1.07999 * 119.99815 * 359.97438 * 15 14 11 17 17 C 1.37874 * 120.00131 * 179.97438 * 15 14 11 18 18 N 1.31510 * 120.00282 * 179.97438 * 17 15 14 19 19 Si 1.86811 * 120.00044 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47038 * 89.99633 * 19 17 15 21 21 H 1.48497 * 109.47025 * 209.99845 * 19 17 15 22 22 H 1.48496 * 109.46836 * 329.99944 * 19 17 15 23 23 C 1.46841 * 111.19963 * 298.28819 * 10 9 8 24 24 C 1.53043 * 109.52255 * 61.74507 * 23 10 9 25 25 C 1.38707 * 119.88546 * 0.02562 * 5 4 3 26 26 C 1.38168 * 119.94695 * 359.69754 * 25 5 4 27 27 C 1.50698 * 119.97654 * 180.31788 * 26 25 5 28 28 H 1.08998 * 109.46904 * 90.00081 * 1 2 3 29 29 H 1.09005 * 109.46759 * 330.00201 * 1 2 3 30 30 H 1.08995 * 109.47156 * 210.00139 * 1 2 3 31 31 H 1.08002 * 119.97201 * 359.97438 * 3 2 1 32 32 H 1.07997 * 120.03064 * 180.02562 * 4 3 2 33 33 H 1.09004 * 109.52191 * 35.63744 * 7 6 5 34 34 H 1.09005 * 109.50129 * 302.37987 * 8 7 6 35 35 H 1.09001 * 109.50234 * 62.49365 * 8 7 6 36 36 H 1.08996 * 109.41035 * 299.06828 * 9 8 7 37 37 H 1.08994 * 109.45302 * 179.12662 * 9 8 7 38 38 H 1.08999 * 109.47122 * 59.99354 * 13 11 10 39 39 H 1.09001 * 109.47712 * 179.97438 * 13 11 10 40 40 H 1.08998 * 109.46579 * 299.99955 * 13 11 10 41 41 H 1.09000 * 109.47195 * 57.55154 * 14 11 10 42 42 H 1.09000 * 109.47278 * 177.54955 * 14 11 10 43 43 H 0.96997 * 120.00110 * 180.02562 * 18 17 15 44 44 H 1.09003 * 109.46438 * 301.72914 * 23 10 9 45 45 H 1.09003 * 109.45396 * 181.75642 * 23 10 9 46 46 H 1.09007 * 109.49938 * 180.88186 * 24 23 10 47 47 H 1.08995 * 109.49828 * 60.76304 * 24 23 10 48 48 H 1.08001 * 120.02996 * 180.02562 * 25 5 4 49 49 H 1.08998 * 109.47216 * 270.25316 * 27 26 25 50 50 H 1.09000 * 109.47273 * 30.25513 * 27 26 25 51 51 H 1.09000 * 109.47069 * 150.25590 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5785 1.2010 0.0005 5 6 4.2735 0.0000 0.0005 6 8 5.6325 0.0001 0.0016 7 6 6.2812 1.2681 0.1164 8 6 6.3909 1.9140 -1.2676 9 6 7.1415 3.2422 -1.1472 10 7 8.4790 3.0027 -0.5901 11 6 9.2771 4.2360 -0.5887 12 1 10.2226 4.0563 -0.0769 13 6 8.5068 5.3413 0.1364 14 6 9.5518 4.6674 -2.0307 15 6 10.3624 3.6049 -2.7272 16 1 10.6531 2.7115 -2.1944 17 6 10.7331 3.7733 -4.0444 18 7 11.4409 2.8464 -4.6521 19 14 10.2310 5.3190 -4.9657 20 1 11.2784 6.3580 -4.7971 21 1 10.0722 5.0057 -6.4085 22 1 8.9432 5.8219 -4.4237 23 6 8.3972 2.4273 0.7584 24 6 7.6855 1.0739 0.6947 25 6 3.5788 -1.2005 -0.0005 26 6 2.1971 -1.1979 0.0047 27 6 1.4417 -2.5018 0.0108 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8901 0.5138 30 1 -0.3633 -0.8899 0.5138 31 1 1.6559 2.1328 -0.0004 32 1 4.1171 2.1370 0.0010 33 1 5.7021 1.9152 0.7753 34 1 6.9357 1.2486 -1.9375 35 1 5.3922 2.0940 -1.6654 36 1 6.5886 3.9124 -0.4890 37 1 7.2349 3.6971 -2.1333 38 1 8.3111 5.0340 1.1637 39 1 9.0992 6.2563 0.1378 40 1 7.5614 5.5210 -0.3754 41 1 8.6062 4.8050 -2.5551 42 1 10.1067 5.6055 -2.0298 43 1 11.7020 2.9651 -5.5787 44 1 7.8384 3.1013 1.4077 45 1 9.4028 2.2905 1.1563 46 1 7.6111 0.6543 1.6980 47 1 8.2512 0.3951 0.0566 48 1 4.1173 -2.1366 -0.0001 49 1 1.2595 -2.8210 -1.0154 50 1 2.0296 -3.2600 0.5282 51 1 0.4894 -2.3677 0.5239 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411172717.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:34 Heat of formation + Delta-G solvation = -22.083177 kcal Electronic energy + Delta-G solvation = -27092.297907 eV Core-core repulsion = 23570.253683 eV Total energy + Delta-G solvation = -3522.044224 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.55605 -39.09625 -37.75096 -34.38501 -32.81135 -32.38692 -31.85311 -30.71796 -29.55904 -27.85794 -27.52459 -26.15683 -24.15931 -23.12231 -22.53228 -22.22310 -20.74989 -19.82831 -18.81523 -17.80538 -16.56298 -16.50090 -15.71773 -15.32056 -15.25141 -14.63543 -14.57321 -14.32210 -14.20218 -13.97725 -13.59385 -13.49846 -13.16863 -13.01689 -12.98040 -12.67629 -12.42947 -12.38296 -12.18556 -12.08005 -11.91741 -11.69900 -11.49332 -11.42815 -11.31863 -11.09650 -10.93521 -10.69556 -10.55606 -10.39562 -10.15922 -10.07026 -9.62032 -9.54126 -9.02115 -8.89511 -8.42593 -8.04097 -7.56936 -5.90590 -3.84803 1.21407 1.34751 3.20090 3.34649 3.42977 3.44339 3.61710 4.38723 4.53821 4.62462 4.65530 4.80043 4.86179 4.92684 4.95467 5.05780 5.12793 5.21266 5.28623 5.39390 5.42488 5.43194 5.48895 5.52589 5.58941 5.60574 5.62446 5.62810 5.71352 5.78116 5.83145 5.88682 5.92200 5.95303 6.00433 6.12987 6.21342 6.26828 6.32163 6.38190 6.40870 6.52174 6.52455 6.57706 6.74659 6.75265 7.08897 7.31837 7.49442 7.74708 7.78595 7.94726 8.72319 9.23018 9.72239 11.23402 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017600 B = 0.002831 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.547787 B = 9886.447172 C =10177.645711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.134 4.134 3 C -0.076 4.076 4 C -0.212 4.212 5 C 0.139 3.861 6 O -0.308 6.308 7 C 0.089 3.911 8 C -0.140 4.140 9 C 0.061 3.939 10 N -0.508 5.508 11 C 0.097 3.903 12 H 0.076 0.924 13 C -0.188 4.188 14 C -0.008 4.008 15 C -0.490 4.490 16 H 0.080 0.920 17 C 0.062 3.938 18 N -0.907 5.907 19 Si 0.871 3.129 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.269 1.269 23 C 0.059 3.941 24 C -0.109 4.109 25 C -0.155 4.155 26 C -0.050 4.050 27 C -0.117 4.117 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.122 0.878 32 H 0.130 0.870 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.024 0.976 37 H 0.090 0.910 38 H 0.043 0.957 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.016 0.984 42 H 0.014 0.986 43 H 0.259 0.741 44 H 0.026 0.974 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.086 0.914 48 H 0.129 0.871 49 H 0.072 0.928 50 H 0.066 0.934 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.348 -4.857 12.984 24.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.134 4.134 3 C -0.095 4.095 4 C -0.230 4.230 5 C 0.093 3.907 6 O -0.222 6.222 7 C 0.033 3.967 8 C -0.178 4.178 9 C -0.067 4.067 10 N -0.232 5.232 11 C -0.011 4.011 12 H 0.095 0.905 13 C -0.247 4.247 14 C -0.045 4.045 15 C -0.528 4.528 16 H 0.098 0.902 17 C -0.138 4.138 18 N -0.547 5.547 19 Si 0.699 3.301 20 H -0.206 1.206 21 H -0.216 1.216 22 H -0.194 1.194 23 C -0.070 4.070 24 C -0.147 4.147 25 C -0.174 4.174 26 C -0.050 4.050 27 C -0.173 4.173 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.139 0.861 32 H 0.147 0.853 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.042 0.958 37 H 0.108 0.892 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.034 0.966 42 H 0.032 0.968 43 H 0.069 0.931 44 H 0.044 0.956 45 H 0.098 0.902 46 H 0.087 0.913 47 H 0.105 0.895 48 H 0.147 0.853 49 H 0.091 0.909 50 H 0.085 0.915 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.878 -5.402 12.496 24.093 hybrid contribution -0.579 1.740 -0.195 1.844 sum -20.456 -3.662 12.301 24.149 Atomic orbital electron populations 1.20761 0.91409 1.02440 1.02026 1.19608 0.95931 0.92536 1.05368 1.20788 0.93321 0.97469 0.97882 1.21329 0.95235 0.97515 1.08970 1.19010 0.82918 0.93857 0.94874 1.86129 1.15675 1.33047 1.87322 1.22589 0.93639 0.82848 0.97588 1.22179 1.00575 0.98354 0.96733 1.22006 0.88834 0.94784 1.01084 1.61995 1.13273 1.28531 1.19352 1.21677 0.95002 0.85780 0.98661 0.90543 1.22572 1.01447 1.00877 0.99787 1.19697 0.96833 0.96764 0.91197 1.21042 1.30981 1.04668 0.96132 0.90174 1.25013 0.95208 0.95920 0.97649 1.69906 1.38926 1.34008 1.11880 0.86924 0.79413 0.84488 0.79228 1.20603 1.21621 1.19385 1.22024 1.00163 0.93892 0.90895 1.21630 0.93114 0.98884 1.01060 1.20276 0.93017 0.96456 1.07623 1.19498 0.92563 0.95008 0.97952 1.20864 0.99986 0.93929 1.02533 0.91570 0.91986 0.91449 0.86051 0.85255 0.91689 0.89360 0.91611 0.95770 0.89175 0.93756 0.92432 0.92872 0.96592 0.96817 0.93068 0.95608 0.90157 0.91305 0.89522 0.85340 0.90932 0.91467 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 9.61 36.00 0.35 -0.46 16 2 C -0.13 -1.38 5.88 -104.60 -0.62 -1.99 16 3 C -0.08 -0.83 9.69 -39.61 -0.38 -1.22 16 4 C -0.21 -2.61 8.25 -39.43 -0.33 -2.94 16 5 C 0.14 1.89 6.60 -39.22 -0.26 1.63 16 6 O -0.31 -4.56 9.81 -19.42 -0.19 -4.75 16 7 C 0.09 1.24 2.18 -26.61 -0.06 1.19 16 8 C -0.14 -2.17 5.37 -26.65 -0.14 -2.31 16 9 C 0.06 1.02 4.54 -3.83 -0.02 1.00 16 10 N -0.51 -9.21 4.24 -226.69 -0.96 -10.17 16 11 C 0.10 1.84 2.28 -67.71 -0.15 1.68 16 12 H 0.08 1.49 7.99 -51.93 -0.41 1.07 16 13 C -0.19 -2.91 8.45 37.16 0.31 -2.60 16 14 C -0.01 -0.17 3.40 -27.88 -0.09 -0.27 16 15 C -0.49 -13.71 9.33 -34.44 -0.32 -14.03 16 16 H 0.08 2.46 7.97 -52.49 -0.42 2.04 16 17 C 0.06 1.80 5.47 -17.82 -0.10 1.70 16 18 N -0.91 -28.27 13.96 55.43 0.77 -27.49 16 19 Si 0.87 21.79 27.47 -169.99 -4.67 17.12 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 23 C 0.06 0.87 5.13 -3.83 -0.02 0.85 16 24 C -0.11 -1.52 5.75 -26.65 -0.15 -1.68 16 25 C -0.16 -1.90 9.64 -39.43 -0.38 -2.28 16 26 C -0.05 -0.53 5.88 -104.65 -0.62 -1.14 16 27 C -0.12 -0.88 9.60 36.00 0.35 -0.53 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 30 H 0.07 0.42 5.93 -51.93 -0.31 0.11 16 31 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.13 1.52 5.39 -52.49 -0.28 1.24 16 33 H 0.07 0.84 6.34 -51.93 -0.33 0.51 16 34 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 35 H 0.07 0.93 6.86 -51.93 -0.36 0.58 16 36 H 0.02 0.36 6.58 -51.93 -0.34 0.02 16 37 H 0.09 1.71 6.17 -51.93 -0.32 1.39 16 38 H 0.04 0.61 6.82 -51.93 -0.35 0.25 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.05 0.81 6.46 -51.93 -0.34 0.47 16 41 H 0.02 0.37 5.38 -51.93 -0.28 0.09 16 42 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 43 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.03 0.35 6.88 -51.93 -0.36 -0.01 16 45 H 0.08 1.17 8.01 -51.93 -0.42 0.75 16 46 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 47 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 48 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 49 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 51 H 0.07 0.44 5.94 -51.93 -0.31 0.13 16 LS Contribution 383.01 15.07 5.77 5.77 Total: -1.00 -31.25 383.01 -10.51 -41.77 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -8.60 Total: 1.16 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: -2.63 Total: -23.40 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: -0.19 Total: -37.67 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.19 Total: -4.75 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.25 -10.51 -41.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411172717.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.682 kcal (2) G-P(sol) polarization free energy of solvation -31.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds