Wall clock time and date at job start Tue Mar 31 2020 11:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38286 * 119.94545 * 2 1 4 4 C 1.38122 * 120.05886 * 179.97438 * 3 2 1 5 5 C 1.38755 * 119.94450 * 0.02562 * 4 3 2 6 6 O 1.35898 * 120.05613 * 180.02562 * 5 4 3 7 7 C 1.42896 * 117.00409 * 5.12521 * 6 5 4 8 8 C 1.53119 * 109.52573 * 275.51723 * 7 6 5 9 9 C 1.53042 * 109.27741 * 182.50080 * 8 7 6 10 10 N 1.46847 * 109.57143 * 59.08239 * 9 8 7 11 11 C 1.46897 * 110.99588 * 174.19267 * 10 9 8 12 12 H 1.09005 * 109.47517 * 174.10590 * 11 10 9 13 13 C 1.53002 * 109.47484 * 54.10797 * 11 10 9 14 14 C 1.52998 * 109.47304 * 294.10599 * 11 10 9 15 15 C 1.50702 * 109.47279 * 297.55188 * 14 11 10 16 16 H 1.07999 * 119.99815 * 359.97438 * 15 14 11 17 17 C 1.37874 * 120.00131 * 179.97438 * 15 14 11 18 18 N 1.31510 * 120.00282 * 179.97438 * 17 15 14 19 19 Si 1.86811 * 120.00044 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47038 * 89.99633 * 19 17 15 21 21 H 1.48497 * 109.47025 * 209.99845 * 19 17 15 22 22 H 1.48496 * 109.46836 * 329.99944 * 19 17 15 23 23 C 1.46841 * 111.19963 * 298.28819 * 10 9 8 24 24 C 1.53043 * 109.52255 * 61.74507 * 23 10 9 25 25 C 1.38707 * 119.88546 * 0.02562 * 5 4 3 26 26 C 1.38168 * 119.94695 * 359.69754 * 25 5 4 27 27 C 1.50698 * 119.97654 * 180.31788 * 26 25 5 28 28 H 1.08998 * 109.46904 * 90.00081 * 1 2 3 29 29 H 1.09005 * 109.46759 * 330.00201 * 1 2 3 30 30 H 1.08995 * 109.47156 * 210.00139 * 1 2 3 31 31 H 1.08002 * 119.97201 * 359.97438 * 3 2 1 32 32 H 1.07997 * 120.03064 * 180.02562 * 4 3 2 33 33 H 1.09004 * 109.52191 * 35.63744 * 7 6 5 34 34 H 1.09005 * 109.50129 * 302.37987 * 8 7 6 35 35 H 1.09001 * 109.50234 * 62.49365 * 8 7 6 36 36 H 1.08996 * 109.41035 * 299.06828 * 9 8 7 37 37 H 1.08994 * 109.45302 * 179.12662 * 9 8 7 38 38 H 1.08999 * 109.47122 * 59.99354 * 13 11 10 39 39 H 1.09001 * 109.47712 * 179.97438 * 13 11 10 40 40 H 1.08998 * 109.46579 * 299.99955 * 13 11 10 41 41 H 1.09000 * 109.47195 * 57.55154 * 14 11 10 42 42 H 1.09000 * 109.47278 * 177.54955 * 14 11 10 43 43 H 0.96997 * 120.00110 * 180.02562 * 18 17 15 44 44 H 1.09003 * 109.46438 * 301.72914 * 23 10 9 45 45 H 1.09003 * 109.45396 * 181.75642 * 23 10 9 46 46 H 1.09007 * 109.49938 * 180.88186 * 24 23 10 47 47 H 1.08995 * 109.49828 * 60.76304 * 24 23 10 48 48 H 1.08001 * 120.02996 * 180.02562 * 25 5 4 49 49 H 1.08998 * 109.47216 * 270.25316 * 27 26 25 50 50 H 1.09000 * 109.47273 * 30.25513 * 27 26 25 51 51 H 1.09000 * 109.47069 * 150.25590 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5785 1.2010 0.0005 5 6 4.2735 0.0000 0.0005 6 8 5.6325 0.0001 0.0016 7 6 6.2812 1.2681 0.1164 8 6 6.3909 1.9140 -1.2676 9 6 7.1415 3.2422 -1.1472 10 7 8.4790 3.0027 -0.5901 11 6 9.2771 4.2360 -0.5887 12 1 10.2226 4.0563 -0.0769 13 6 8.5068 5.3413 0.1364 14 6 9.5518 4.6674 -2.0307 15 6 10.3624 3.6049 -2.7272 16 1 10.6531 2.7115 -2.1944 17 6 10.7331 3.7733 -4.0444 18 7 11.4409 2.8464 -4.6521 19 14 10.2310 5.3190 -4.9657 20 1 11.2784 6.3580 -4.7971 21 1 10.0722 5.0057 -6.4085 22 1 8.9432 5.8219 -4.4237 23 6 8.3972 2.4273 0.7584 24 6 7.6855 1.0739 0.6947 25 6 3.5788 -1.2005 -0.0005 26 6 2.1971 -1.1979 0.0047 27 6 1.4417 -2.5018 0.0108 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8901 0.5138 30 1 -0.3633 -0.8899 0.5138 31 1 1.6559 2.1328 -0.0004 32 1 4.1171 2.1370 0.0010 33 1 5.7021 1.9152 0.7753 34 1 6.9357 1.2486 -1.9375 35 1 5.3922 2.0940 -1.6654 36 1 6.5886 3.9124 -0.4890 37 1 7.2349 3.6971 -2.1333 38 1 8.3111 5.0340 1.1637 39 1 9.0992 6.2563 0.1378 40 1 7.5614 5.5210 -0.3754 41 1 8.6062 4.8050 -2.5551 42 1 10.1067 5.6055 -2.0298 43 1 11.7020 2.9651 -5.5787 44 1 7.8384 3.1013 1.4077 45 1 9.4028 2.2905 1.1563 46 1 7.6111 0.6543 1.6980 47 1 8.2512 0.3951 0.0566 48 1 4.1173 -2.1366 -0.0001 49 1 1.2595 -2.8210 -1.0154 50 1 2.0296 -3.2600 0.5282 51 1 0.4894 -2.3677 0.5239 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411172717.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:32 Heat of formation + Delta-G solvation = -39.470880 kcal Electronic energy + Delta-G solvation = -27093.051895 eV Core-core repulsion = 23570.253683 eV Total energy + Delta-G solvation = -3522.798211 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -41.56522 -40.23102 -38.83336 -35.84734 -34.33922 -33.58098 -32.78948 -31.97455 -31.03100 -29.43716 -28.33824 -26.91492 -25.47328 -24.57034 -24.03383 -23.12287 -21.85105 -21.03140 -20.19525 -18.78832 -18.75425 -17.54262 -16.85485 -16.51479 -16.28158 -16.20571 -15.69021 -15.49649 -15.18294 -15.07082 -14.77541 -14.69178 -14.38112 -14.31288 -14.02701 -13.80109 -13.61409 -13.55861 -13.41909 -13.18168 -12.98593 -12.85563 -12.78429 -12.59012 -12.46210 -12.19970 -12.11917 -12.05766 -11.94951 -11.66555 -11.50457 -11.47812 -11.34248 -11.28152 -10.92784 -10.66672 -9.73698 -8.94062 -8.89064 -8.16577 -6.15228 0.36504 0.47472 1.35929 1.38020 1.48389 2.18716 2.41825 2.75976 3.04158 3.22171 3.65374 3.72082 3.87462 3.90208 3.96745 4.07687 4.09784 4.21080 4.28482 4.31710 4.33815 4.36394 4.42280 4.46674 4.57699 4.59683 4.72475 4.74847 4.76723 4.82392 4.84538 4.87424 4.93623 4.96839 5.03903 5.08297 5.11913 5.14461 5.16077 5.22962 5.24348 5.26575 5.33619 5.44492 5.46706 5.57704 5.74091 5.76242 5.93925 6.36110 6.42883 6.50889 6.55638 6.94032 7.45267 9.01053 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017600 B = 0.002831 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.547787 B = 9886.447172 C =10177.645711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.137 4.137 3 C -0.083 4.083 4 C -0.221 4.221 5 C 0.111 3.889 6 O -0.327 6.327 7 C 0.097 3.903 8 C -0.133 4.133 9 C 0.066 3.934 10 N -0.542 5.542 11 C 0.099 3.901 12 H 0.064 0.936 13 C -0.176 4.176 14 C -0.006 4.006 15 C -0.486 4.486 16 H 0.035 0.965 17 C -0.006 4.006 18 N -0.960 5.960 19 Si 0.943 3.057 20 H -0.269 1.269 21 H -0.292 1.292 22 H -0.248 1.248 23 C 0.063 3.937 24 C -0.106 4.106 25 C -0.172 4.172 26 C -0.055 4.055 27 C -0.116 4.116 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.143 0.857 32 H 0.133 0.867 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.018 0.982 42 H 0.020 0.980 43 H 0.260 0.740 44 H 0.052 0.948 45 H 0.078 0.922 46 H 0.092 0.908 47 H 0.058 0.942 48 H 0.128 0.872 49 H 0.079 0.921 50 H 0.071 0.929 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.585 -3.100 14.578 27.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.137 4.137 3 C -0.101 4.101 4 C -0.240 4.240 5 C 0.066 3.934 6 O -0.241 6.241 7 C 0.041 3.959 8 C -0.171 4.171 9 C -0.062 4.062 10 N -0.266 5.266 11 C -0.009 4.009 12 H 0.082 0.918 13 C -0.235 4.235 14 C -0.043 4.043 15 C -0.525 4.525 16 H 0.053 0.947 17 C -0.200 4.200 18 N -0.603 5.603 19 Si 0.767 3.233 20 H -0.194 1.194 21 H -0.218 1.218 22 H -0.171 1.171 23 C -0.065 4.065 24 C -0.143 4.143 25 C -0.191 4.191 26 C -0.056 4.056 27 C -0.172 4.172 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.161 0.839 32 H 0.151 0.849 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.036 0.964 42 H 0.039 0.961 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.097 0.903 46 H 0.111 0.889 47 H 0.076 0.924 48 H 0.146 0.854 49 H 0.098 0.902 50 H 0.090 0.910 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -23.133 -3.639 14.118 27.344 hybrid contribution 0.396 1.052 -0.657 1.302 sum -22.737 -2.587 13.460 26.549 Atomic orbital electron populations 1.20827 0.89093 1.03740 1.02866 1.20041 0.97688 0.92143 1.03811 1.21121 0.92899 0.98807 0.97260 1.21437 0.96046 0.97101 1.09396 1.19285 0.82398 0.94974 0.96759 1.86099 1.16799 1.33269 1.87938 1.22472 0.93743 0.83050 0.96591 1.22075 1.00358 0.97321 0.97355 1.21917 0.88643 0.95511 1.00097 1.61861 1.14179 1.28694 1.21875 1.21476 0.95621 0.87608 0.96163 0.91753 1.22424 1.01044 0.99537 1.00511 1.19656 0.95796 0.95235 0.93659 1.21297 1.30687 1.04320 0.96156 0.94654 1.25963 0.95462 0.99653 0.98927 1.70089 1.41132 1.36731 1.12332 0.85774 0.80094 0.80071 0.77326 1.19414 1.21840 1.17148 1.22032 1.00665 0.94321 0.89477 1.21595 0.92864 0.98113 1.01770 1.20503 0.94064 0.96221 1.08294 1.19882 0.92056 0.96680 0.96940 1.20933 1.00464 0.92480 1.03322 0.90817 0.90860 0.90073 0.83886 0.84916 0.89679 0.93070 0.90458 0.93015 0.91945 0.91414 0.91596 0.92324 0.96366 0.96149 0.93159 0.93017 0.90332 0.88949 0.92355 0.85404 0.90193 0.91012 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 9.61 71.24 0.68 -0.56 16 2 C -0.14 -2.49 5.88 -19.85 -0.12 -2.61 16 3 C -0.08 -1.63 9.69 22.25 0.22 -1.41 16 4 C -0.22 -5.19 8.25 22.37 0.18 -5.01 16 5 C 0.11 2.99 6.60 22.51 0.15 3.14 16 6 O -0.33 -9.83 9.81 -92.40 -0.91 -10.74 16 7 C 0.10 2.67 2.18 30.67 0.07 2.74 16 8 C -0.13 -4.17 5.37 30.65 0.16 -4.01 16 9 C 0.07 2.17 4.54 86.33 0.39 2.56 16 10 N -0.54 -19.68 4.24 -871.12 -3.69 -23.37 16 11 C 0.10 3.70 2.28 44.92 0.10 3.81 16 12 H 0.06 2.51 7.99 -2.38 -0.02 2.49 16 13 C -0.18 -4.92 8.45 71.98 0.61 -4.31 16 14 C -0.01 -0.27 3.40 29.85 0.10 -0.17 16 15 C -0.49 -28.17 9.33 25.60 0.24 -27.94 16 16 H 0.04 2.30 7.97 -2.91 -0.02 2.28 16 17 C -0.01 -0.33 5.47 84.65 0.46 0.13 16 18 N -0.96 -62.35 13.96 21.45 0.30 -62.05 16 19 Si 0.94 45.37 27.47 68.60 1.88 47.26 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 22 H -0.25 -10.98 6.54 99.48 0.65 -10.32 16 23 C 0.06 1.79 5.13 86.33 0.44 2.24 16 24 C -0.11 -2.94 5.75 30.65 0.18 -2.76 16 25 C -0.17 -4.19 9.64 22.37 0.22 -3.97 16 26 C -0.06 -1.09 5.88 -19.88 -0.12 -1.21 16 27 C -0.12 -1.49 9.60 71.24 0.68 -0.81 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 0.69 8.08 -2.38 -0.02 0.67 16 30 H 0.08 0.71 5.93 -2.39 -0.01 0.69 16 31 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 32 H 0.13 2.90 5.39 -2.91 -0.02 2.89 16 33 H 0.09 2.01 6.34 -2.39 -0.02 2.00 16 34 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.08 2.20 6.86 -2.39 -0.02 2.18 16 36 H 0.05 1.41 6.58 -2.39 -0.02 1.39 16 37 H 0.06 2.37 6.17 -2.39 -0.01 2.36 16 38 H 0.07 1.59 6.82 -2.39 -0.02 1.57 16 39 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.06 1.58 6.46 -2.39 -0.02 1.56 16 41 H 0.02 0.84 5.38 -2.39 -0.01 0.82 16 42 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 43 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 44 H 0.05 1.23 6.88 -2.39 -0.02 1.21 16 45 H 0.08 2.25 8.01 -2.39 -0.02 2.23 16 46 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 47 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.13 2.96 8.06 -2.91 -0.02 2.93 16 49 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.07 0.86 8.09 -2.39 -0.02 0.84 16 51 H 0.09 0.82 5.94 -2.39 -0.01 0.81 16 Total: -1.00 -71.17 383.01 3.08 -68.09 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.85 Total: 20.96 kcal Atomic # 6 Polarization: -44.81 SS G_CDS: 4.66 Total: -40.15 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -3.39 Total: -85.42 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -0.91 Total: -10.74 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.88 Total: 47.26 kcal Total: -71.17 3.08 -68.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411172717.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.618 kcal (2) G-P(sol) polarization free energy of solvation -71.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds