Wall clock time and date at job start Tue Mar 31 2020 11:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38286 * 119.98630 * 2 1 4 4 C 1.38140 * 120.27028 * 179.45440 * 3 2 1 5 5 C 1.50705 * 120.14468 * 180.02562 * 4 3 2 6 6 C 1.38957 * 119.71196 * 0.04447 * 4 3 2 7 7 C 1.38246 * 119.63706 * 1.00376 * 6 4 3 8 8 C 1.37703 * 120.65003 * 358.40967 * 7 6 4 9 9 C 1.51730 * 119.06678 * 178.54623 * 7 6 4 10 10 H 1.08990 * 109.59625 * 187.89246 * 9 7 6 11 11 N 1.46897 * 109.60047 * 308.20518 * 9 7 6 12 12 C 1.46893 * 111.00104 * 274.69034 * 11 9 7 13 13 C 1.53004 * 109.47285 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47200 * 59.99494 * 13 12 11 15 15 C 1.53005 * 109.46471 * 299.99467 * 13 12 11 16 16 C 1.50701 * 109.47211 * 179.97438 * 13 12 11 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 13 12 18 18 C 1.37871 * 119.99694 * 180.27574 * 16 13 12 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 13 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 13 21 21 H 1.48494 * 109.47230 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47301 * 119.99669 * 20 18 16 23 23 H 1.48498 * 109.47430 * 239.99516 * 20 18 16 24 24 C 1.52861 * 108.83139 * 68.05265 * 9 7 6 25 25 C 1.52123 * 110.85491 * 276.38555 * 24 9 7 26 26 C 1.51436 * 113.46630 * 67.75013 * 25 24 9 27 27 O 1.36035 * 119.73725 * 181.19440 * 6 4 3 28 28 H 1.09001 * 109.47586 * 89.99959 * 1 2 3 29 29 H 1.09002 * 109.47274 * 210.00139 * 1 2 3 30 30 H 1.08998 * 109.47030 * 330.00112 * 1 2 3 31 31 H 1.08003 * 119.86474 * 359.46964 * 3 2 1 32 32 H 1.09001 * 109.47337 * 269.97797 * 5 4 3 33 33 H 1.08997 * 109.46958 * 29.97895 * 5 4 3 34 34 H 1.08994 * 109.47012 * 149.97611 * 5 4 3 35 35 H 1.07998 * 120.11937 * 180.97723 * 8 7 6 36 36 H 1.00908 * 111.00037 * 38.64057 * 11 9 7 37 37 H 1.09000 * 109.47823 * 59.99694 * 12 11 9 38 38 H 1.09007 * 109.47029 * 299.99462 * 12 11 9 39 39 H 1.09004 * 109.46783 * 180.02562 * 14 13 12 40 40 H 1.09005 * 109.46870 * 300.00189 * 14 13 12 41 41 H 1.08998 * 109.47156 * 60.00128 * 14 13 12 42 42 H 1.08995 * 109.47438 * 299.99599 * 15 13 12 43 43 H 1.08996 * 109.47069 * 60.00459 * 15 13 12 44 44 H 1.09004 * 109.46658 * 179.97438 * 15 13 12 45 45 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 46 46 H 1.09001 * 109.20003 * 36.73867 * 24 9 7 47 47 H 1.08991 * 109.19684 * 156.03535 * 24 9 7 48 48 H 1.09001 * 108.68027 * 188.77700 * 25 24 9 49 49 H 1.08999 * 108.68750 * 306.84954 * 25 24 9 50 50 H 1.09001 * 109.20243 * 55.11134 * 26 25 24 51 51 H 1.08997 * 109.20584 * 174.45768 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1978 0.0000 4 6 3.5795 1.2046 0.0114 5 6 4.3298 2.5116 0.0119 6 6 4.2742 0.0012 0.0219 7 6 3.5756 -1.1916 -0.0002 8 6 2.1986 -1.1988 0.0004 9 6 4.3476 -2.4976 -0.0220 10 1 3.6582 -3.3272 -0.1787 11 7 5.3368 -2.4673 -1.1076 12 6 4.7343 -2.8846 -2.3806 13 6 5.7929 -2.8409 -3.4845 14 6 6.9404 -3.7882 -3.1285 15 6 6.3314 -1.4150 -3.6183 16 6 5.1749 -3.2696 -4.7904 17 1 4.1316 -3.5460 -4.8290 18 6 5.9430 -3.3149 -5.9344 19 7 7.2135 -2.9786 -5.8873 20 14 5.1789 -3.8538 -7.5516 21 1 3.7454 -4.1772 -7.3383 22 1 5.2966 -2.7561 -8.5448 23 1 5.8874 -5.0569 -8.0573 24 6 5.0621 -2.6709 1.3182 25 6 6.3843 -1.9188 1.3282 26 6 6.2222 -0.4135 1.2935 27 8 5.6340 0.0073 0.0577 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6557 2.1317 -0.0087 32 1 4.5196 2.8221 -1.0156 33 1 3.7345 3.2721 0.5172 34 1 5.2780 2.3859 0.5345 35 1 1.6616 -2.1358 -0.0010 36 1 5.7567 -1.5534 -1.1887 37 1 3.9165 -2.2100 -2.6341 38 1 4.3510 -3.9006 -2.2854 39 1 7.6947 -3.7566 -3.9147 40 1 7.3874 -3.4784 -2.1838 41 1 6.5567 -4.8039 -3.0331 42 1 5.5139 -0.7402 -3.8719 43 1 6.7785 -1.1054 -2.6737 44 1 7.0859 -1.3839 -4.4044 45 1 7.7540 -3.0108 -6.6921 46 1 4.4257 -2.2878 2.1159 47 1 5.2512 -3.7306 1.4891 48 1 6.9335 -2.1901 2.2298 49 1 6.9671 -2.2254 0.4596 50 1 5.5820 -0.1028 2.1192 51 1 7.2002 0.0551 1.4022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414159555.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:42 Heat of formation + Delta-G solvation = -28.007491 kcal Electronic energy + Delta-G solvation = -28677.033846 eV Core-core repulsion = 25154.732724 eV Total energy + Delta-G solvation = -3522.301122 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.81035 -37.84421 -36.90439 -35.20755 -33.11154 -32.46972 -31.81012 -30.05936 -27.85686 -27.13030 -25.93123 -25.44286 -25.13316 -24.41804 -23.30208 -21.41601 -20.47371 -19.50725 -18.42564 -17.61369 -16.54092 -15.89124 -15.49440 -15.24153 -14.77327 -14.46393 -14.19501 -14.06248 -13.91487 -13.54977 -13.40041 -13.12691 -13.08436 -12.64661 -12.55840 -12.36131 -12.30578 -12.15174 -11.84350 -11.74216 -11.52146 -11.23612 -11.11013 -10.93688 -10.84358 -10.59876 -10.48696 -10.43410 -10.39019 -10.07161 -9.99206 -9.76954 -9.29220 -8.97508 -8.58666 -8.50258 -8.22018 -8.18073 -7.57608 -5.83805 -3.93567 1.27259 1.41397 3.34455 3.42492 3.46347 3.48498 3.96804 4.49778 4.69534 4.75733 4.79660 4.94426 5.05975 5.10236 5.22567 5.26772 5.28929 5.38031 5.41494 5.47759 5.52966 5.54829 5.66162 5.67918 5.69882 5.83369 5.89537 5.98739 6.04019 6.08753 6.23308 6.26094 6.43965 6.45066 6.53621 6.56706 6.62412 6.65719 6.85018 6.85613 7.02441 7.20485 7.30920 7.46848 7.57640 7.62621 7.84949 7.85853 7.92808 8.19524 8.33481 8.44717 8.65340 9.08059 9.70818 11.16679 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013319 B = 0.004370 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.746233 B = 6405.570055 C = 7129.405287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.092 4.092 3 C -0.117 4.117 4 C -0.095 4.095 5 C -0.106 4.106 6 C 0.096 3.904 7 C -0.124 4.124 8 C -0.105 4.105 9 C 0.124 3.876 10 H 0.080 0.920 11 N -0.674 5.674 12 C 0.075 3.925 13 C 0.070 3.930 14 C -0.117 4.117 15 C -0.128 4.128 16 C -0.502 4.502 17 H 0.051 0.949 18 C 0.065 3.935 19 N -0.884 5.884 20 Si 0.886 3.114 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.285 1.285 24 C -0.100 4.100 25 C -0.155 4.155 26 C 0.067 3.933 27 O -0.318 6.318 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.121 0.879 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.123 0.877 36 H 0.356 0.644 37 H 0.011 0.989 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.019 0.981 41 H 0.017 0.983 42 H 0.016 0.984 43 H 0.012 0.988 44 H 0.081 0.919 45 H 0.256 0.744 46 H 0.053 0.947 47 H 0.070 0.930 48 H 0.066 0.934 49 H 0.096 0.904 50 H 0.049 0.951 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.200 7.539 17.171 20.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.092 4.092 3 C -0.135 4.135 4 C -0.096 4.096 5 C -0.163 4.163 6 C 0.052 3.948 7 C -0.127 4.127 8 C -0.124 4.124 9 C 0.013 3.987 10 H 0.099 0.901 11 N -0.310 5.310 12 C -0.053 4.053 13 C 0.069 3.931 14 C -0.175 4.175 15 C -0.186 4.186 16 C -0.541 4.541 17 H 0.069 0.931 18 C -0.136 4.136 19 N -0.524 5.524 20 Si 0.715 3.285 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.212 1.212 24 C -0.138 4.138 25 C -0.193 4.193 26 C -0.007 4.007 27 O -0.234 6.234 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.139 0.861 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.141 0.859 36 H 0.181 0.819 37 H 0.029 0.971 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.038 0.962 41 H 0.036 0.964 42 H 0.035 0.965 43 H 0.031 0.969 44 H 0.099 0.901 45 H 0.066 0.934 46 H 0.071 0.929 47 H 0.089 0.911 48 H 0.085 0.915 49 H 0.114 0.886 50 H 0.067 0.933 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.621 6.990 17.039 19.571 hybrid contribution -1.188 0.344 -1.098 1.654 sum -7.809 7.333 15.941 19.206 Atomic orbital electron populations 1.20751 0.91241 1.02414 1.02343 1.19904 0.95970 0.93029 1.00279 1.20713 0.92801 0.97544 1.02419 1.20066 0.93678 0.94841 1.00984 1.20629 0.99854 0.93127 1.02653 1.18284 0.83226 0.91540 1.01710 1.21233 0.94654 0.96774 1.00031 1.20716 0.92917 0.97610 1.01141 1.20790 0.92454 0.92024 0.93448 0.90149 1.60970 1.29554 1.35564 1.04916 1.22146 0.96891 0.97725 0.88568 1.18075 0.91411 0.92713 0.90882 1.21627 1.00191 0.96966 0.98732 1.21785 1.00470 0.97186 0.99190 1.21153 0.95937 1.44205 0.92843 0.93105 1.24875 0.94827 0.95370 0.98514 1.69850 1.05903 1.48816 1.27800 0.86632 0.79393 0.78206 0.84287 1.20022 1.21217 1.21157 1.21296 0.96081 1.00732 0.95717 1.21621 0.99095 0.94652 1.03918 1.22546 0.98022 0.95383 0.84781 1.86286 1.15767 1.86161 1.35217 0.91164 0.91661 0.91793 0.86054 0.90946 0.92023 0.91284 0.85920 0.81868 0.97081 0.93003 0.90794 0.96235 0.96423 0.96469 0.96905 0.90060 0.93352 0.92851 0.91098 0.91521 0.88577 0.93279 0.88749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 10.01 36.01 0.36 -0.69 16 2 C -0.09 -1.16 5.89 -104.54 -0.62 -1.77 16 3 C -0.12 -1.47 9.35 -39.60 -0.37 -1.84 16 4 C -0.10 -1.32 5.90 -104.39 -0.62 -1.94 16 5 C -0.11 -1.22 9.80 36.01 0.35 -0.87 16 6 C 0.10 1.49 5.26 -39.31 -0.21 1.28 16 7 C -0.12 -1.91 4.61 -104.31 -0.48 -2.39 16 8 C -0.11 -1.46 9.35 -39.72 -0.37 -1.84 16 9 C 0.12 1.94 2.69 -68.43 -0.18 1.76 16 10 H 0.08 1.26 7.61 -51.93 -0.40 0.86 16 11 N -0.67 -12.71 4.13 -107.49 -0.44 -13.15 16 12 C 0.08 1.67 4.39 -3.83 -0.02 1.65 16 13 C 0.07 1.76 0.57 -155.66 -0.09 1.67 16 14 C -0.12 -2.95 8.09 37.16 0.30 -2.65 16 15 C -0.13 -3.25 7.92 37.16 0.29 -2.95 16 16 C -0.50 -14.00 8.01 -34.44 -0.28 -14.27 16 17 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 18 C 0.06 1.80 5.15 -17.82 -0.09 1.71 16 19 N -0.88 -25.12 9.35 55.43 0.52 -24.60 16 20 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 C -0.10 -1.30 5.55 -27.25 -0.15 -1.45 16 25 C -0.16 -1.94 5.27 -27.97 -0.15 -2.09 16 26 C 0.07 0.82 6.50 36.37 0.24 1.05 16 27 O -0.32 -4.91 7.04 -19.85 -0.14 -5.05 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 30 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 31 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 34 H 0.07 0.78 7.51 -51.93 -0.39 0.39 16 35 H 0.12 1.53 7.99 -52.49 -0.42 1.11 16 36 H 0.36 6.99 3.35 -39.29 -0.13 6.86 16 37 H 0.01 0.25 8.02 -51.93 -0.42 -0.16 16 38 H 0.05 1.15 8.06 -51.93 -0.42 0.74 16 39 H 0.07 2.03 6.06 -51.93 -0.31 1.71 16 40 H 0.02 0.44 7.60 -51.93 -0.39 0.05 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.01 0.29 6.57 -51.93 -0.34 -0.05 16 44 H 0.08 2.24 6.08 -51.93 -0.32 1.92 16 45 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.05 0.63 7.89 -51.93 -0.41 0.22 16 47 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.10 1.45 6.80 -51.93 -0.35 1.10 16 50 H 0.05 0.54 7.90 -51.93 -0.41 0.13 16 51 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 382.48 15.07 5.76 5.76 Total: -1.00 -29.48 382.48 -10.29 -39.76 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -8.89 Total: 6.27 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: -2.07 Total: -25.62 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.07 Total: -37.75 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.14 Total: -5.05 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.48 -10.29 -39.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414159555.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.756 kcal (2) G-P(sol) polarization free energy of solvation -29.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds