Wall clock time and date at job start Tue Mar 31 2020 11:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38286 * 119.98630 * 2 1 4 4 C 1.38140 * 120.27028 * 179.45440 * 3 2 1 5 5 C 1.50705 * 120.14468 * 180.02562 * 4 3 2 6 6 C 1.38957 * 119.71196 * 0.04447 * 4 3 2 7 7 C 1.38246 * 119.63706 * 1.00376 * 6 4 3 8 8 C 1.37703 * 120.65003 * 358.40967 * 7 6 4 9 9 C 1.51730 * 119.06678 * 178.54623 * 7 6 4 10 10 H 1.08990 * 109.59625 * 187.89246 * 9 7 6 11 11 N 1.46897 * 109.60047 * 308.20518 * 9 7 6 12 12 C 1.46893 * 111.00104 * 274.69034 * 11 9 7 13 13 C 1.53004 * 109.47285 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47200 * 59.99494 * 13 12 11 15 15 C 1.53005 * 109.46471 * 299.99467 * 13 12 11 16 16 C 1.50701 * 109.47211 * 179.97438 * 13 12 11 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 13 12 18 18 C 1.37871 * 119.99694 * 180.27574 * 16 13 12 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 13 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 13 21 21 H 1.48494 * 109.47230 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47301 * 119.99669 * 20 18 16 23 23 H 1.48498 * 109.47430 * 239.99516 * 20 18 16 24 24 C 1.52861 * 108.83139 * 68.05265 * 9 7 6 25 25 C 1.52123 * 110.85491 * 276.38555 * 24 9 7 26 26 C 1.51436 * 113.46630 * 67.75013 * 25 24 9 27 27 O 1.36035 * 119.73725 * 181.19440 * 6 4 3 28 28 H 1.09001 * 109.47586 * 89.99959 * 1 2 3 29 29 H 1.09002 * 109.47274 * 210.00139 * 1 2 3 30 30 H 1.08998 * 109.47030 * 330.00112 * 1 2 3 31 31 H 1.08003 * 119.86474 * 359.46964 * 3 2 1 32 32 H 1.09001 * 109.47337 * 269.97797 * 5 4 3 33 33 H 1.08997 * 109.46958 * 29.97895 * 5 4 3 34 34 H 1.08994 * 109.47012 * 149.97611 * 5 4 3 35 35 H 1.07998 * 120.11937 * 180.97723 * 8 7 6 36 36 H 1.00908 * 111.00037 * 38.64057 * 11 9 7 37 37 H 1.09000 * 109.47823 * 59.99694 * 12 11 9 38 38 H 1.09007 * 109.47029 * 299.99462 * 12 11 9 39 39 H 1.09004 * 109.46783 * 180.02562 * 14 13 12 40 40 H 1.09005 * 109.46870 * 300.00189 * 14 13 12 41 41 H 1.08998 * 109.47156 * 60.00128 * 14 13 12 42 42 H 1.08995 * 109.47438 * 299.99599 * 15 13 12 43 43 H 1.08996 * 109.47069 * 60.00459 * 15 13 12 44 44 H 1.09004 * 109.46658 * 179.97438 * 15 13 12 45 45 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 46 46 H 1.09001 * 109.20003 * 36.73867 * 24 9 7 47 47 H 1.08991 * 109.19684 * 156.03535 * 24 9 7 48 48 H 1.09001 * 108.68027 * 188.77700 * 25 24 9 49 49 H 1.08999 * 108.68750 * 306.84954 * 25 24 9 50 50 H 1.09001 * 109.20243 * 55.11134 * 26 25 24 51 51 H 1.08997 * 109.20584 * 174.45768 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1978 0.0000 4 6 3.5795 1.2046 0.0114 5 6 4.3298 2.5116 0.0119 6 6 4.2742 0.0012 0.0219 7 6 3.5756 -1.1916 -0.0002 8 6 2.1986 -1.1988 0.0004 9 6 4.3476 -2.4976 -0.0220 10 1 3.6582 -3.3272 -0.1787 11 7 5.3368 -2.4673 -1.1076 12 6 4.7343 -2.8846 -2.3806 13 6 5.7929 -2.8409 -3.4845 14 6 6.9404 -3.7882 -3.1285 15 6 6.3314 -1.4150 -3.6183 16 6 5.1749 -3.2696 -4.7904 17 1 4.1316 -3.5460 -4.8290 18 6 5.9430 -3.3149 -5.9344 19 7 7.2135 -2.9786 -5.8873 20 14 5.1789 -3.8538 -7.5516 21 1 3.7454 -4.1772 -7.3383 22 1 5.2966 -2.7561 -8.5448 23 1 5.8874 -5.0569 -8.0573 24 6 5.0621 -2.6709 1.3182 25 6 6.3843 -1.9188 1.3282 26 6 6.2222 -0.4135 1.2935 27 8 5.6340 0.0073 0.0577 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6557 2.1317 -0.0087 32 1 4.5196 2.8221 -1.0156 33 1 3.7345 3.2721 0.5172 34 1 5.2780 2.3859 0.5345 35 1 1.6616 -2.1358 -0.0010 36 1 5.7567 -1.5534 -1.1887 37 1 3.9165 -2.2100 -2.6341 38 1 4.3510 -3.9006 -2.2854 39 1 7.6947 -3.7566 -3.9147 40 1 7.3874 -3.4784 -2.1838 41 1 6.5567 -4.8039 -3.0331 42 1 5.5139 -0.7402 -3.8719 43 1 6.7785 -1.1054 -2.6737 44 1 7.0859 -1.3839 -4.4044 45 1 7.7540 -3.0108 -6.6921 46 1 4.4257 -2.2878 2.1159 47 1 5.2512 -3.7306 1.4891 48 1 6.9335 -2.1901 2.2298 49 1 6.9671 -2.2254 0.4596 50 1 5.5820 -0.1028 2.1192 51 1 7.2002 0.0551 1.4022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414159555.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:41 Heat of formation + Delta-G solvation = -41.544444 kcal Electronic energy + Delta-G solvation = -28677.620852 eV Core-core repulsion = 25154.732724 eV Total energy + Delta-G solvation = -3522.888128 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.88602 -38.92806 -38.46230 -36.72385 -34.32734 -33.65151 -33.23472 -31.64532 -28.94382 -28.07761 -27.53269 -27.25174 -26.92744 -25.75979 -24.78351 -22.44104 -21.44484 -20.68107 -20.36149 -18.68392 -17.87609 -17.63068 -16.98554 -16.51044 -16.25384 -15.67851 -15.50774 -15.29210 -14.98622 -14.76411 -14.72630 -14.34658 -14.20384 -14.06954 -13.93882 -13.73636 -13.36330 -13.30355 -13.11375 -13.02699 -12.95762 -12.76012 -12.69155 -12.47134 -12.37543 -12.18213 -12.15458 -12.06500 -11.76426 -11.57766 -11.45532 -11.31578 -10.89622 -10.83208 -10.59317 -10.35396 -9.62114 -9.21851 -9.09937 -7.96885 -6.13887 0.25507 0.37289 1.39781 1.42307 1.52370 2.45715 2.49390 2.92292 3.24636 3.50863 3.66011 3.86278 3.92276 4.01353 4.11949 4.18159 4.33458 4.39156 4.47131 4.50779 4.55867 4.59407 4.62580 4.70653 4.74992 4.78398 4.83433 4.85049 4.89870 4.99868 5.00841 5.02396 5.08743 5.12954 5.17512 5.24591 5.27857 5.32180 5.41942 5.44160 5.50773 5.54794 5.55913 5.64095 5.68814 5.75571 5.89528 6.19171 6.27464 6.34691 6.50729 6.59418 6.74686 6.95188 7.53257 9.01697 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013319 B = 0.004370 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.746233 B = 6405.570055 C = 7129.405287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.095 4.095 3 C -0.119 4.119 4 C -0.109 4.109 5 C -0.103 4.103 6 C 0.077 3.923 7 C -0.143 4.143 8 C -0.120 4.120 9 C 0.121 3.879 10 H 0.075 0.925 11 N -0.671 5.671 12 C 0.094 3.906 13 C 0.062 3.938 14 C -0.102 4.102 15 C -0.111 4.111 16 C -0.525 4.525 17 H 0.041 0.959 18 C 0.023 3.977 19 N -0.903 5.903 20 Si 0.945 3.055 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.280 1.280 24 C -0.095 4.095 25 C -0.152 4.152 26 C 0.063 3.937 27 O -0.339 6.339 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.147 0.853 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.131 0.869 36 H 0.352 0.648 37 H -0.007 1.007 38 H 0.046 0.954 39 H 0.049 0.951 40 H 0.032 0.968 41 H 0.012 0.988 42 H 0.005 0.995 43 H 0.026 0.974 44 H 0.057 0.943 45 H 0.258 0.742 46 H 0.068 0.932 47 H 0.075 0.925 48 H 0.093 0.907 49 H 0.068 0.932 50 H 0.061 0.939 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.319 8.271 18.459 21.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.095 4.095 3 C -0.137 4.137 4 C -0.109 4.109 5 C -0.159 4.159 6 C 0.033 3.967 7 C -0.145 4.145 8 C -0.138 4.138 9 C 0.010 3.990 10 H 0.094 0.906 11 N -0.307 5.307 12 C -0.036 4.036 13 C 0.061 3.939 14 C -0.160 4.160 15 C -0.169 4.169 16 C -0.564 4.564 17 H 0.059 0.941 18 C -0.176 4.176 19 N -0.542 5.542 20 Si 0.772 3.228 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.206 1.206 24 C -0.133 4.133 25 C -0.190 4.190 26 C -0.011 4.011 27 O -0.256 6.256 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.165 0.835 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.149 0.851 36 H 0.177 0.823 37 H 0.011 0.989 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.031 0.969 42 H 0.024 0.976 43 H 0.045 0.955 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.086 0.914 47 H 0.094 0.906 48 H 0.112 0.888 49 H 0.087 0.913 50 H 0.080 0.920 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.743 7.720 18.346 21.357 hybrid contribution -0.855 0.143 -1.454 1.692 sum -8.598 7.863 16.892 20.521 Atomic orbital electron populations 1.20801 0.88964 1.03912 1.02835 1.20279 0.97688 0.92516 0.98997 1.21083 0.92572 0.98705 1.01379 1.20411 0.94492 0.95249 1.00786 1.20645 1.00082 0.92731 1.02484 1.18517 0.83364 0.92178 1.02643 1.21221 0.95300 0.96419 1.01559 1.20946 0.92675 0.98751 1.01461 1.20870 0.92163 0.92456 0.93506 0.90640 1.60933 1.30439 1.35329 1.03996 1.21774 0.95308 0.97047 0.89445 1.18116 0.92145 0.92388 0.91204 1.21432 0.99423 0.96683 0.98422 1.21576 0.99238 0.97184 0.98925 1.21423 0.95704 1.44823 0.94425 0.94066 1.25537 0.95286 0.95406 1.01409 1.69973 1.06715 1.48993 1.28530 0.85707 0.78636 0.77893 0.80560 1.19808 1.20836 1.20588 1.21267 0.96399 1.01271 0.94364 1.21596 0.98530 0.94911 1.03916 1.22738 0.98970 0.95212 0.84159 1.86245 1.16025 1.86412 1.36883 0.91013 0.90695 0.89864 0.83487 0.91671 0.89555 0.91370 0.85141 0.82298 0.98896 0.93522 0.93201 0.94858 0.96905 0.97585 0.95518 0.92428 0.93283 0.91363 0.90640 0.88839 0.91326 0.92037 0.86996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 10.01 71.24 0.71 -1.09 16 2 C -0.09 -2.23 5.89 -19.81 -0.12 -2.35 16 3 C -0.12 -2.79 9.35 22.26 0.21 -2.58 16 4 C -0.11 -2.89 5.90 -19.71 -0.12 -3.01 16 5 C -0.10 -2.21 9.80 71.24 0.70 -1.52 16 6 C 0.08 2.33 5.26 22.44 0.12 2.45 16 7 C -0.14 -4.33 4.61 -19.66 -0.09 -4.42 16 8 C -0.12 -3.25 9.35 22.18 0.21 -3.04 16 9 C 0.12 3.75 2.69 44.45 0.12 3.87 16 10 H 0.08 2.37 7.61 -2.39 -0.02 2.35 16 11 N -0.67 -25.49 4.13 -493.99 -2.04 -27.53 16 12 C 0.09 4.23 4.39 86.31 0.38 4.60 16 13 C 0.06 3.19 0.57 -52.93 -0.03 3.16 16 14 C -0.10 -5.18 8.09 71.98 0.58 -4.59 16 15 C -0.11 -5.74 7.92 71.98 0.57 -5.17 16 16 C -0.53 -29.74 8.01 25.60 0.21 -29.53 16 17 H 0.04 2.35 7.74 -2.91 -0.02 2.33 16 18 C 0.02 1.27 5.15 84.65 0.44 1.70 16 19 N -0.90 -51.92 9.35 21.45 0.20 -51.71 16 20 Si 0.95 44.69 29.54 68.60 2.03 46.71 16 21 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 23 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 24 C -0.10 -2.35 5.55 30.26 0.17 -2.18 16 25 C -0.15 -3.58 5.27 29.79 0.16 -3.42 16 26 C 0.06 1.44 6.50 71.47 0.46 1.91 16 27 O -0.34 -10.32 7.04 -93.95 -0.66 -10.98 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 30 H 0.08 1.06 8.09 -2.39 -0.02 1.04 16 31 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.09 1.38 8.09 -2.39 -0.02 1.36 16 34 H 0.07 1.45 7.51 -2.39 -0.02 1.44 16 35 H 0.13 3.18 7.99 -2.91 -0.02 3.16 16 36 H 0.35 13.96 3.35 -89.69 -0.30 13.66 16 37 H -0.01 -0.35 8.02 -2.39 -0.02 -0.37 16 38 H 0.05 2.12 8.06 -2.38 -0.02 2.10 16 39 H 0.05 2.77 6.06 -2.38 -0.01 2.75 16 40 H 0.03 1.55 7.60 -2.38 -0.02 1.53 16 41 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.00 0.26 8.14 -2.39 -0.02 0.25 16 43 H 0.03 1.25 6.57 -2.39 -0.02 1.24 16 44 H 0.06 3.23 6.08 -2.38 -0.01 3.22 16 45 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 46 H 0.07 1.49 7.89 -2.39 -0.02 1.48 16 47 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.07 2.03 6.80 -2.39 -0.02 2.01 16 50 H 0.06 1.24 7.90 -2.39 -0.02 1.23 16 51 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -63.69 382.48 4.79 -58.90 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 0.60 Total: 29.83 kcal Atomic # 6 Polarization: -49.89 SS G_CDS: 4.67 Total: -45.21 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -1.84 Total: -79.25 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -0.66 Total: -10.98 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -63.69 4.79 -58.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414159555.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.351 kcal (2) G-P(sol) polarization free energy of solvation -63.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds