Wall clock time and date at job start Tue Mar 31 2020 11:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38288 * 119.97101 * 2 1 4 4 C 1.38153 * 120.24465 * 180.18294 * 3 2 1 5 5 C 1.50701 * 120.16302 * 180.42333 * 4 3 2 6 6 C 1.38926 * 119.67915 * 0.67599 * 4 3 2 7 7 C 1.37950 * 119.80350 * 358.91753 * 6 4 3 8 8 C 1.38011 * 120.56824 * 0.91991 * 7 6 4 9 9 C 1.51672 * 119.40223 * 181.72489 * 7 6 4 10 10 H 1.08998 * 109.60086 * 171.46629 * 9 7 6 11 11 N 1.46897 * 109.60073 * 51.14669 * 9 7 6 12 12 C 1.46907 * 110.99937 * 85.00063 * 11 9 7 13 13 C 1.52999 * 109.47067 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47198 * 299.99772 * 13 12 11 15 15 C 1.52998 * 109.47324 * 60.00035 * 13 12 11 16 16 C 1.50699 * 109.46823 * 180.02562 * 13 12 11 17 17 H 1.08004 * 119.99948 * 359.97438 * 16 13 12 18 18 C 1.37873 * 119.99967 * 180.02562 * 16 13 12 19 19 N 1.31517 * 120.00279 * 359.97438 * 18 16 13 20 20 Si 1.86806 * 119.99970 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.47114 * 90.00113 * 20 18 16 22 22 H 1.48506 * 109.46972 * 209.99638 * 20 18 16 23 23 H 1.48492 * 109.47294 * 329.99544 * 20 18 16 24 24 C 1.52882 * 108.70117 * 291.38614 * 9 7 6 25 25 C 1.52139 * 110.81443 * 83.35669 * 24 9 7 26 26 C 1.51428 * 113.45757 * 292.42459 * 25 24 9 27 27 O 1.36120 * 119.78419 * 178.12552 * 6 4 3 28 28 H 1.09002 * 109.47152 * 269.72035 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.72136 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.72117 * 1 2 3 31 31 H 1.08001 * 119.87633 * 0.44350 * 3 2 1 32 32 H 1.09002 * 109.46965 * 270.25667 * 5 4 3 33 33 H 1.09000 * 109.47012 * 30.25354 * 5 4 3 34 34 H 1.09001 * 109.47357 * 150.25699 * 5 4 3 35 35 H 1.07995 * 120.17961 * 179.64449 * 8 7 6 36 36 H 1.00902 * 111.00514 * 321.04947 * 11 9 7 37 37 H 1.09000 * 109.46865 * 300.00224 * 12 11 9 38 38 H 1.08997 * 109.46826 * 60.00330 * 12 11 9 39 39 H 1.09006 * 109.46668 * 60.00161 * 14 13 12 40 40 H 1.08994 * 109.47103 * 180.02562 * 14 13 12 41 41 H 1.09005 * 109.46915 * 300.00769 * 14 13 12 42 42 H 1.09004 * 109.47157 * 60.00184 * 15 13 12 43 43 H 1.09002 * 109.46653 * 179.97438 * 15 13 12 44 44 H 1.08996 * 109.47255 * 299.99669 * 15 13 12 45 45 H 0.96996 * 120.00344 * 180.02562 * 19 18 16 46 46 H 1.08994 * 109.20593 * 203.70305 * 24 9 7 47 47 H 1.08997 * 109.20689 * 323.06187 * 24 9 7 48 48 H 1.09006 * 108.68767 * 53.45221 * 25 24 9 49 49 H 1.08997 * 108.68573 * 171.39432 * 25 24 9 50 50 H 1.09007 * 109.18650 * 185.78132 * 26 25 24 51 51 H 1.09004 * 109.18796 * 305.03555 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5794 1.2046 -0.0038 5 6 4.3304 2.5111 0.0058 6 6 4.2730 0.0010 -0.0219 7 6 3.5784 -1.1909 -0.0133 8 6 2.1983 -1.1989 -0.0059 9 6 4.3450 -2.4994 0.0066 10 1 3.6527 -3.3265 0.1635 11 7 5.3358 -2.4736 1.0908 12 6 4.7316 -2.8825 2.3660 13 6 5.7915 -2.8426 3.4686 14 6 6.9319 -3.7993 3.1147 15 6 6.3404 -1.4203 3.5972 16 6 5.1718 -3.2626 4.7765 17 1 4.1263 -3.5307 4.8172 18 6 5.9391 -3.3035 5.9212 19 7 7.2120 -2.9766 5.8717 20 14 5.1707 -3.8235 7.5426 21 1 5.2991 -5.2943 7.7021 22 1 5.8684 -3.1415 8.6622 23 1 3.7341 -3.4479 7.5525 24 6 5.0576 -2.6705 -1.3351 25 6 6.3791 -1.9167 -1.3454 26 6 6.2150 -0.4119 -1.3041 27 8 5.6335 0.0052 -0.0643 28 1 -0.3633 -0.0050 1.0277 29 1 -0.3633 -0.8875 -0.5182 30 1 -0.3633 0.8925 -0.5095 31 1 1.6554 2.1318 0.0072 32 1 4.5046 2.8376 -1.0195 33 1 3.7433 3.2637 0.5320 34 1 5.2865 2.3769 0.5118 35 1 1.6608 -2.1356 -0.0050 36 1 5.7630 -1.5629 1.1688 37 1 3.9194 -2.2006 2.6183 38 1 4.3402 -3.8956 2.2742 39 1 7.3802 -3.4959 2.1685 40 1 7.6868 -3.7712 3.9004 41 1 6.5407 -4.8126 3.0230 42 1 5.5280 -0.7387 3.8494 43 1 7.0952 -1.3919 4.3830 44 1 6.7888 -1.1169 2.6512 45 1 7.7520 -3.0057 6.6770 46 1 5.2476 -3.7298 -1.5077 47 1 4.4201 -2.2861 -2.1313 48 1 6.9654 -2.2279 -0.4808 49 1 6.9263 -2.1836 -2.2494 50 1 7.1919 0.0582 -1.4176 51 1 5.5702 -0.0991 -2.1254 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414159559.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:45 Heat of formation + Delta-G solvation = -27.722552 kcal Electronic energy + Delta-G solvation = -28684.426223 eV Core-core repulsion = 25162.137458 eV Total energy + Delta-G solvation = -3522.288766 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.81176 -37.83961 -36.89591 -35.20466 -33.11716 -32.46402 -31.80498 -30.05531 -27.86165 -27.10603 -25.93913 -25.44062 -25.13035 -24.41913 -23.30373 -21.42768 -20.45635 -19.50771 -18.42344 -17.60912 -16.53648 -15.89121 -15.48522 -15.23417 -14.77331 -14.47058 -14.19583 -14.06849 -13.88413 -13.55701 -13.39179 -13.15449 -13.07882 -12.65125 -12.55882 -12.36416 -12.30455 -12.14912 -11.83554 -11.73655 -11.49743 -11.22192 -11.10109 -10.92921 -10.84364 -10.60871 -10.50174 -10.43772 -10.38818 -10.06798 -9.98924 -9.77624 -9.28970 -8.97260 -8.58276 -8.50414 -8.21608 -8.18053 -7.57495 -5.83480 -3.93314 1.27567 1.40761 3.35631 3.42218 3.45530 3.46983 3.98542 4.49921 4.70095 4.76318 4.79853 4.95117 5.05936 5.10474 5.22540 5.27600 5.29462 5.38922 5.41707 5.48799 5.52878 5.54229 5.62011 5.66984 5.72420 5.84357 5.90158 5.98978 6.03856 6.08571 6.24109 6.26335 6.44471 6.45345 6.53711 6.57007 6.62376 6.65804 6.85179 6.85741 7.02613 7.20683 7.31075 7.46942 7.57773 7.62733 7.84930 7.85994 7.92903 8.19745 8.33730 8.44842 8.65496 9.08067 9.70977 11.16961 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013277 B = 0.004385 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.350110 B = 6383.841763 C = 7109.699444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.092 4.092 3 C -0.116 4.116 4 C -0.095 4.095 5 C -0.108 4.108 6 C 0.098 3.902 7 C -0.125 4.125 8 C -0.105 4.105 9 C 0.124 3.876 10 H 0.081 0.919 11 N -0.674 5.674 12 C 0.075 3.925 13 C 0.070 3.930 14 C -0.117 4.117 15 C -0.129 4.129 16 C -0.503 4.503 17 H 0.050 0.950 18 C 0.065 3.935 19 N -0.885 5.885 20 Si 0.887 3.113 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.100 4.100 25 C -0.155 4.155 26 C 0.069 3.931 27 O -0.320 6.320 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.122 0.878 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.123 0.877 36 H 0.356 0.644 37 H 0.011 0.989 38 H 0.051 0.949 39 H 0.019 0.981 40 H 0.073 0.927 41 H 0.017 0.983 42 H 0.016 0.984 43 H 0.081 0.919 44 H 0.012 0.988 45 H 0.257 0.743 46 H 0.070 0.930 47 H 0.053 0.947 48 H 0.095 0.905 49 H 0.066 0.934 50 H 0.094 0.906 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.167 7.536 -17.151 20.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.092 4.092 3 C -0.135 4.135 4 C -0.095 4.095 5 C -0.165 4.165 6 C 0.054 3.946 7 C -0.128 4.128 8 C -0.124 4.124 9 C 0.013 3.987 10 H 0.099 0.901 11 N -0.310 5.310 12 C -0.053 4.053 13 C 0.070 3.930 14 C -0.175 4.175 15 C -0.186 4.186 16 C -0.542 4.542 17 H 0.068 0.932 18 C -0.136 4.136 19 N -0.524 5.524 20 Si 0.715 3.285 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.202 1.202 24 C -0.138 4.138 25 C -0.193 4.193 26 C -0.006 4.006 27 O -0.236 6.236 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.139 0.861 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.141 0.859 36 H 0.181 0.819 37 H 0.029 0.971 38 H 0.070 0.930 39 H 0.038 0.962 40 H 0.092 0.908 41 H 0.036 0.964 42 H 0.035 0.965 43 H 0.100 0.900 44 H 0.031 0.969 45 H 0.067 0.933 46 H 0.089 0.911 47 H 0.072 0.928 48 H 0.114 0.886 49 H 0.085 0.915 50 H 0.112 0.888 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.589 6.990 -17.012 19.537 hybrid contribution -1.210 0.356 1.078 1.659 sum -7.799 7.345 -15.934 19.201 Atomic orbital electron populations 1.20753 0.91249 1.02406 1.02344 1.19906 0.95974 0.93040 1.00312 1.20729 0.92815 0.97536 1.02375 1.20054 0.93671 0.94808 1.01003 1.20645 1.00685 0.93244 1.01897 1.18214 0.83201 0.91528 1.01685 1.21240 0.94664 0.96803 1.00091 1.20806 0.92912 0.97591 1.01086 1.20786 0.92496 0.91954 0.93440 0.90109 1.60974 1.29117 1.36042 1.04890 1.22145 0.96910 0.97738 0.88530 1.18068 0.91395 0.92708 0.90876 1.21627 1.00191 0.96971 0.98712 1.21786 1.00504 0.97182 0.99176 1.21115 0.95761 1.44604 0.92738 0.93166 1.24874 0.94839 0.95341 0.98502 1.69840 1.05796 1.48830 1.27905 0.86688 0.79318 0.78582 0.83907 1.20842 1.21365 1.20183 1.21304 0.96088 1.00721 0.95722 1.21623 0.99101 0.94681 1.03896 1.22519 0.98082 0.95355 0.84619 1.86257 1.15896 1.86396 1.35057 0.91166 0.91667 0.91796 0.86050 0.91675 0.91767 0.90587 0.85912 0.81855 0.97082 0.93005 0.96233 0.90818 0.96428 0.96473 0.90032 0.96907 0.93296 0.91096 0.92844 0.88609 0.91518 0.88763 0.93315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 36.01 0.36 -0.70 16 2 C -0.09 -1.17 5.89 -104.55 -0.62 -1.78 16 3 C -0.12 -1.47 9.35 -39.59 -0.37 -1.84 16 4 C -0.09 -1.32 5.90 -104.40 -0.62 -1.93 16 5 C -0.11 -1.24 9.78 36.01 0.35 -0.89 16 6 C 0.10 1.51 5.26 -39.43 -0.21 1.30 16 7 C -0.13 -1.93 4.58 -104.33 -0.48 -2.41 16 8 C -0.11 -1.47 9.35 -39.61 -0.37 -1.84 16 9 C 0.12 1.95 2.70 -68.45 -0.18 1.76 16 10 H 0.08 1.26 7.60 -51.93 -0.39 0.87 16 11 N -0.67 -12.71 4.15 -107.50 -0.45 -13.16 16 12 C 0.08 1.67 4.39 -3.82 -0.02 1.65 16 13 C 0.07 1.77 0.57 -155.66 -0.09 1.68 16 14 C -0.12 -2.94 8.09 37.16 0.30 -2.64 16 15 C -0.13 -3.25 7.92 37.16 0.29 -2.96 16 16 C -0.50 -14.03 8.01 -34.44 -0.28 -14.30 16 17 H 0.05 1.40 7.74 -52.48 -0.41 1.00 16 18 C 0.07 1.81 5.15 -17.82 -0.09 1.72 16 19 N -0.88 -25.12 9.35 55.43 0.52 -24.60 16 20 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 24 C -0.10 -1.30 5.55 -27.23 -0.15 -1.45 16 25 C -0.16 -1.94 5.27 -27.96 -0.15 -2.09 16 26 C 0.07 0.84 6.49 36.36 0.24 1.07 16 27 O -0.32 -4.94 7.07 -20.12 -0.14 -5.08 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 30 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 31 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 34 H 0.08 0.96 7.56 -51.93 -0.39 0.56 16 35 H 0.12 1.53 7.98 -52.49 -0.42 1.11 16 36 H 0.36 6.99 3.32 -39.29 -0.13 6.86 16 37 H 0.01 0.26 8.01 -51.93 -0.42 -0.16 16 38 H 0.05 1.15 8.06 -51.93 -0.42 0.74 16 39 H 0.02 0.44 7.60 -51.93 -0.39 0.05 16 40 H 0.07 2.02 6.07 -51.93 -0.32 1.70 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 2.24 6.07 -51.93 -0.32 1.93 16 44 H 0.01 0.29 6.57 -51.93 -0.34 -0.05 16 45 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.05 0.63 7.89 -51.93 -0.41 0.22 16 48 H 0.10 1.44 6.80 -51.93 -0.35 1.09 16 49 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 51 H 0.05 0.54 7.90 -51.93 -0.41 0.13 16 LS Contribution 382.48 15.07 5.76 5.76 Total: -1.00 -29.45 382.48 -10.29 -39.74 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -8.89 Total: 6.34 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: -2.07 Total: -25.64 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.07 Total: -37.76 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.14 Total: -5.08 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.45 -10.29 -39.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414159559.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.021 kcal (2) G-P(sol) polarization free energy of solvation -29.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds