Wall clock time and date at job start Tue Mar 31 2020 11:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38288 * 119.97101 * 2 1 4 4 C 1.38153 * 120.24465 * 180.18294 * 3 2 1 5 5 C 1.50701 * 120.16302 * 180.42333 * 4 3 2 6 6 C 1.38926 * 119.67915 * 0.67599 * 4 3 2 7 7 C 1.37950 * 119.80350 * 358.91753 * 6 4 3 8 8 C 1.38011 * 120.56824 * 0.91991 * 7 6 4 9 9 C 1.51672 * 119.40223 * 181.72489 * 7 6 4 10 10 H 1.08998 * 109.60086 * 171.46629 * 9 7 6 11 11 N 1.46897 * 109.60073 * 51.14669 * 9 7 6 12 12 C 1.46907 * 110.99937 * 85.00063 * 11 9 7 13 13 C 1.52999 * 109.47067 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47198 * 299.99772 * 13 12 11 15 15 C 1.52998 * 109.47324 * 60.00035 * 13 12 11 16 16 C 1.50699 * 109.46823 * 180.02562 * 13 12 11 17 17 H 1.08004 * 119.99948 * 359.97438 * 16 13 12 18 18 C 1.37873 * 119.99967 * 180.02562 * 16 13 12 19 19 N 1.31517 * 120.00279 * 359.97438 * 18 16 13 20 20 Si 1.86806 * 119.99970 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.47114 * 90.00113 * 20 18 16 22 22 H 1.48506 * 109.46972 * 209.99638 * 20 18 16 23 23 H 1.48492 * 109.47294 * 329.99544 * 20 18 16 24 24 C 1.52882 * 108.70117 * 291.38614 * 9 7 6 25 25 C 1.52139 * 110.81443 * 83.35669 * 24 9 7 26 26 C 1.51428 * 113.45757 * 292.42459 * 25 24 9 27 27 O 1.36120 * 119.78419 * 178.12552 * 6 4 3 28 28 H 1.09002 * 109.47152 * 269.72035 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.72136 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.72117 * 1 2 3 31 31 H 1.08001 * 119.87633 * 0.44350 * 3 2 1 32 32 H 1.09002 * 109.46965 * 270.25667 * 5 4 3 33 33 H 1.09000 * 109.47012 * 30.25354 * 5 4 3 34 34 H 1.09001 * 109.47357 * 150.25699 * 5 4 3 35 35 H 1.07995 * 120.17961 * 179.64449 * 8 7 6 36 36 H 1.00902 * 111.00514 * 321.04947 * 11 9 7 37 37 H 1.09000 * 109.46865 * 300.00224 * 12 11 9 38 38 H 1.08997 * 109.46826 * 60.00330 * 12 11 9 39 39 H 1.09006 * 109.46668 * 60.00161 * 14 13 12 40 40 H 1.08994 * 109.47103 * 180.02562 * 14 13 12 41 41 H 1.09005 * 109.46915 * 300.00769 * 14 13 12 42 42 H 1.09004 * 109.47157 * 60.00184 * 15 13 12 43 43 H 1.09002 * 109.46653 * 179.97438 * 15 13 12 44 44 H 1.08996 * 109.47255 * 299.99669 * 15 13 12 45 45 H 0.96996 * 120.00344 * 180.02562 * 19 18 16 46 46 H 1.08994 * 109.20593 * 203.70305 * 24 9 7 47 47 H 1.08997 * 109.20689 * 323.06187 * 24 9 7 48 48 H 1.09006 * 108.68767 * 53.45221 * 25 24 9 49 49 H 1.08997 * 108.68573 * 171.39432 * 25 24 9 50 50 H 1.09007 * 109.18650 * 185.78132 * 26 25 24 51 51 H 1.09004 * 109.18796 * 305.03555 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5794 1.2046 -0.0038 5 6 4.3304 2.5111 0.0058 6 6 4.2730 0.0010 -0.0219 7 6 3.5784 -1.1909 -0.0133 8 6 2.1983 -1.1989 -0.0059 9 6 4.3450 -2.4994 0.0066 10 1 3.6527 -3.3265 0.1635 11 7 5.3358 -2.4736 1.0908 12 6 4.7316 -2.8825 2.3660 13 6 5.7915 -2.8426 3.4686 14 6 6.9319 -3.7993 3.1147 15 6 6.3404 -1.4203 3.5972 16 6 5.1718 -3.2626 4.7765 17 1 4.1263 -3.5307 4.8172 18 6 5.9391 -3.3035 5.9212 19 7 7.2120 -2.9766 5.8717 20 14 5.1707 -3.8235 7.5426 21 1 5.2991 -5.2943 7.7021 22 1 5.8684 -3.1415 8.6622 23 1 3.7341 -3.4479 7.5525 24 6 5.0576 -2.6705 -1.3351 25 6 6.3791 -1.9167 -1.3454 26 6 6.2150 -0.4119 -1.3041 27 8 5.6335 0.0052 -0.0643 28 1 -0.3633 -0.0050 1.0277 29 1 -0.3633 -0.8875 -0.5182 30 1 -0.3633 0.8925 -0.5095 31 1 1.6554 2.1318 0.0072 32 1 4.5046 2.8376 -1.0195 33 1 3.7433 3.2637 0.5320 34 1 5.2865 2.3769 0.5118 35 1 1.6608 -2.1356 -0.0050 36 1 5.7630 -1.5629 1.1688 37 1 3.9194 -2.2006 2.6183 38 1 4.3402 -3.8956 2.2742 39 1 7.3802 -3.4959 2.1685 40 1 7.6868 -3.7712 3.9004 41 1 6.5407 -4.8126 3.0230 42 1 5.5280 -0.7387 3.8494 43 1 7.0952 -1.3919 4.3830 44 1 6.7888 -1.1169 2.6512 45 1 7.7520 -3.0057 6.6770 46 1 5.2476 -3.7298 -1.5077 47 1 4.4201 -2.2861 -2.1313 48 1 6.9654 -2.2279 -0.4808 49 1 6.9263 -2.1836 -2.2494 50 1 7.1919 0.0582 -1.4176 51 1 5.5702 -0.0991 -2.1254 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414159559.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:44 Heat of formation + Delta-G solvation = -41.264468 kcal Electronic energy + Delta-G solvation = -28685.013445 eV Core-core repulsion = 25162.137458 eV Total energy + Delta-G solvation = -3522.875987 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.88846 -38.92635 -38.45311 -36.71998 -34.33037 -33.65295 -33.22902 -31.64125 -28.94785 -28.05746 -27.53145 -27.24905 -26.93575 -25.75848 -24.78821 -22.45348 -21.42876 -20.68126 -20.36031 -18.67970 -17.87273 -17.62787 -16.98991 -16.50167 -16.24756 -15.68366 -15.50574 -15.29752 -14.96614 -14.75022 -14.73741 -14.35088 -14.19761 -14.06043 -13.94136 -13.74969 -13.36738 -13.29710 -13.12115 -13.03070 -12.95287 -12.75670 -12.67691 -12.50218 -12.36243 -12.18321 -12.13931 -12.06360 -11.76776 -11.58125 -11.45135 -11.31428 -10.89662 -10.83586 -10.59882 -10.34927 -9.61208 -9.21596 -9.10062 -7.96609 -6.13695 0.25817 0.36643 1.41092 1.42289 1.51312 2.45848 2.47898 2.94034 3.24829 3.50855 3.66752 3.86597 3.92067 4.01550 4.12086 4.18010 4.33785 4.38805 4.46762 4.51276 4.55896 4.59616 4.62390 4.70721 4.74010 4.79477 4.83529 4.85383 4.90071 4.99918 5.00943 5.02493 5.08566 5.12830 5.17609 5.24551 5.27863 5.32876 5.42024 5.44191 5.50760 5.54738 5.56015 5.64044 5.68711 5.75625 5.89583 6.19342 6.27519 6.34720 6.50774 6.59533 6.74846 6.95201 7.53358 9.01778 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013277 B = 0.004385 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.350110 B = 6383.841763 C = 7109.699444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.095 4.095 3 C -0.119 4.119 4 C -0.109 4.109 5 C -0.104 4.104 6 C 0.078 3.922 7 C -0.143 4.143 8 C -0.120 4.120 9 C 0.121 3.879 10 H 0.076 0.924 11 N -0.672 5.672 12 C 0.094 3.906 13 C 0.062 3.938 14 C -0.102 4.102 15 C -0.111 4.111 16 C -0.526 4.526 17 H 0.041 0.959 18 C 0.023 3.977 19 N -0.903 5.903 20 Si 0.945 3.055 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.275 1.275 24 C -0.095 4.095 25 C -0.152 4.152 26 C 0.065 3.935 27 O -0.340 6.340 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.147 0.853 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.131 0.869 36 H 0.352 0.648 37 H -0.007 1.007 38 H 0.046 0.954 39 H 0.032 0.968 40 H 0.049 0.951 41 H 0.012 0.988 42 H 0.005 0.995 43 H 0.057 0.943 44 H 0.026 0.974 45 H 0.258 0.742 46 H 0.075 0.925 47 H 0.068 0.932 48 H 0.068 0.932 49 H 0.093 0.907 50 H 0.112 0.888 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.307 8.276 -18.432 21.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.095 4.095 3 C -0.137 4.137 4 C -0.109 4.109 5 C -0.161 4.161 6 C 0.034 3.966 7 C -0.146 4.146 8 C -0.139 4.139 9 C 0.010 3.990 10 H 0.094 0.906 11 N -0.307 5.307 12 C -0.036 4.036 13 C 0.062 3.938 14 C -0.159 4.159 15 C -0.169 4.169 16 C -0.565 4.565 17 H 0.059 0.941 18 C -0.176 4.176 19 N -0.542 5.542 20 Si 0.772 3.228 21 H -0.203 1.203 22 H -0.209 1.209 23 H -0.200 1.200 24 C -0.133 4.133 25 C -0.190 4.190 26 C -0.009 4.009 27 O -0.257 6.257 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.165 0.835 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.149 0.851 36 H 0.177 0.823 37 H 0.011 0.989 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.068 0.932 41 H 0.031 0.969 42 H 0.024 0.976 43 H 0.076 0.924 44 H 0.045 0.955 45 H 0.067 0.933 46 H 0.094 0.906 47 H 0.087 0.913 48 H 0.086 0.914 49 H 0.112 0.888 50 H 0.130 0.870 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.732 7.728 -18.312 21.327 hybrid contribution -0.869 0.155 1.430 1.680 sum -8.602 7.882 -16.883 20.522 Atomic orbital electron populations 1.20803 0.88975 1.03906 1.02830 1.20281 0.97692 0.92531 0.99015 1.21090 0.92570 0.98691 1.01383 1.20403 0.94493 0.95226 1.00779 1.20650 0.99803 0.92586 1.03023 1.18446 0.83345 0.92169 1.02651 1.21224 0.95307 0.96440 1.01585 1.21033 0.92673 0.98729 1.01461 1.20867 0.92198 0.92391 0.93509 0.90589 1.60937 1.30002 1.35822 1.03964 1.21772 0.95325 0.97043 0.89420 1.18110 0.92132 0.92384 0.91200 1.21432 0.99420 0.96682 0.98409 1.21577 0.99270 0.97165 0.98917 1.21396 0.95560 1.45222 0.94322 0.94068 1.25538 0.95304 0.95350 1.01421 1.69967 1.06611 1.49006 1.28600 0.85763 0.78482 0.78352 0.80219 1.20252 1.20892 1.20022 1.21275 0.96405 1.01265 0.94359 1.21599 0.98534 0.94915 1.03919 1.22711 0.99033 0.95206 0.83992 1.86220 1.16151 1.86639 1.36719 0.91020 0.90697 0.89871 0.83490 0.89893 0.90321 0.92193 0.85135 0.82280 0.98925 0.93509 0.94855 0.93220 0.96915 0.97616 0.92391 0.95519 0.93274 0.90632 0.91346 0.91353 0.88827 0.87028 0.92075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.81 10.01 71.24 0.71 -1.10 16 2 C -0.10 -2.25 5.89 -19.82 -0.12 -2.36 16 3 C -0.12 -2.79 9.35 22.26 0.21 -2.58 16 4 C -0.11 -2.89 5.90 -19.72 -0.12 -3.00 16 5 C -0.10 -2.24 9.78 71.24 0.70 -1.55 16 6 C 0.08 2.36 5.26 22.37 0.12 2.47 16 7 C -0.14 -4.35 4.58 -19.68 -0.09 -4.44 16 8 C -0.12 -3.27 9.35 22.25 0.21 -3.07 16 9 C 0.12 3.76 2.70 44.44 0.12 3.88 16 10 H 0.08 2.39 7.60 -2.39 -0.02 2.37 16 11 N -0.67 -25.52 4.15 -494.04 -2.05 -27.57 16 12 C 0.09 4.24 4.39 86.30 0.38 4.61 16 13 C 0.06 3.20 0.57 -52.93 -0.03 3.17 16 14 C -0.10 -5.17 8.09 71.98 0.58 -4.59 16 15 C -0.11 -5.75 7.92 71.98 0.57 -5.18 16 16 C -0.53 -29.82 8.01 25.60 0.21 -29.62 16 17 H 0.04 2.35 7.74 -2.91 -0.02 2.32 16 18 C 0.02 1.28 5.15 84.65 0.44 1.72 16 19 N -0.90 -51.93 9.35 21.45 0.20 -51.72 16 20 Si 0.95 44.68 29.54 68.60 2.03 46.71 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 24 C -0.10 -2.35 5.55 30.27 0.17 -2.18 16 25 C -0.15 -3.58 5.27 29.80 0.16 -3.43 16 26 C 0.06 1.48 6.49 71.47 0.46 1.94 16 27 O -0.34 -10.39 7.07 -94.91 -0.67 -11.06 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 30 H 0.08 1.07 8.08 -2.38 -0.02 1.05 16 31 H 0.15 2.58 8.06 -2.91 -0.02 2.55 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.08 1.43 8.09 -2.39 -0.02 1.41 16 34 H 0.06 1.48 7.56 -2.39 -0.02 1.46 16 35 H 0.13 3.19 7.98 -2.91 -0.02 3.16 16 36 H 0.35 13.97 3.32 -89.69 -0.30 13.67 16 37 H -0.01 -0.36 8.01 -2.39 -0.02 -0.38 16 38 H 0.05 2.13 8.06 -2.39 -0.02 2.11 16 39 H 0.03 1.55 7.60 -2.38 -0.02 1.53 16 40 H 0.05 2.76 6.07 -2.39 -0.01 2.74 16 41 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 42 H 0.00 0.25 8.14 -2.38 -0.02 0.23 16 43 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 44 H 0.03 1.25 6.57 -2.39 -0.02 1.24 16 45 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 46 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.07 1.50 7.89 -2.39 -0.02 1.48 16 48 H 0.07 2.02 6.80 -2.38 -0.02 2.00 16 49 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 50 H 0.11 2.11 8.14 -2.38 -0.02 2.09 16 51 H 0.06 1.24 7.90 -2.38 -0.02 1.22 16 Total: -1.00 -63.70 382.48 4.77 -58.92 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: 0.60 Total: 30.00 kcal Atomic # 6 Polarization: -49.95 SS G_CDS: 4.67 Total: -45.28 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -1.85 Total: -79.29 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: -0.67 Total: -11.06 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -63.70 4.77 -58.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414159559.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.659 kcal (2) G-P(sol) polarization free energy of solvation -63.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds