Wall clock time and date at job start Tue Mar 31 2020 11:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35903 * 116.99615 * 2 1 4 4 C 1.38751 * 120.09260 * 0.02562 * 3 2 1 5 5 C 1.38001 * 119.87589 * 179.97438 * 4 3 2 6 6 C 1.38548 * 120.29145 * 359.97438 * 5 4 3 7 7 C 1.38260 * 119.93616 * 0.02562 * 6 5 4 8 8 C 1.38410 * 119.90384 * 359.97438 * 7 6 5 9 9 C 1.51380 * 109.75173 * 179.97438 * 7 6 5 10 10 C 1.52998 * 110.29995 * 223.87755 * 9 7 6 11 11 C 1.53000 * 110.38565 * 101.76949 * 9 7 6 12 12 C 1.54341 * 105.17503 * 342.80180 * 9 7 6 13 13 C 1.51394 * 130.31828 * 179.97438 * 6 5 4 14 14 H 1.08998 * 110.38743 * 316.19387 * 13 6 5 15 15 N 1.46904 * 110.30050 * 78.30268 * 13 6 5 16 16 C 1.46895 * 110.99580 * 270.74711 * 15 13 6 17 17 C 1.53006 * 109.46877 * 180.02562 * 16 15 13 18 18 C 1.52996 * 109.46985 * 59.99870 * 17 16 15 19 19 C 1.52999 * 109.47033 * 299.99695 * 17 16 15 20 20 C 1.50704 * 109.46765 * 179.97438 * 17 16 15 21 21 H 1.07993 * 120.00244 * 4.71985 * 20 17 16 22 22 C 1.37883 * 119.99712 * 184.71592 * 20 17 16 23 23 N 1.31516 * 120.00085 * 159.99907 * 22 20 17 24 24 Si 1.86802 * 119.99805 * 339.99920 * 22 20 17 25 25 H 1.48503 * 109.47177 * 275.37563 * 24 22 20 26 26 H 1.48493 * 109.47288 * 35.37199 * 24 22 20 27 27 H 1.48500 * 109.47198 * 155.37551 * 24 22 20 28 28 H 1.09003 * 109.47437 * 300.00097 * 1 2 3 29 29 H 1.08992 * 109.47348 * 60.00666 * 1 2 3 30 30 H 1.09001 * 109.46850 * 180.02562 * 1 2 3 31 31 H 1.08003 * 120.05930 * 359.95554 * 4 3 2 32 32 H 1.08004 * 119.85455 * 180.02562 * 5 4 3 33 33 H 1.08006 * 119.90783 * 180.02562 * 8 7 6 34 34 H 1.09002 * 109.47190 * 175.75075 * 10 9 7 35 35 H 1.09001 * 109.47541 * 295.74539 * 10 9 7 36 36 H 1.09004 * 109.47551 * 55.74884 * 10 9 7 37 37 H 1.09000 * 109.47033 * 304.20178 * 11 9 7 38 38 H 1.09001 * 109.46996 * 64.20067 * 11 9 7 39 39 H 1.08999 * 109.46760 * 184.20106 * 11 9 7 40 40 H 1.09004 * 110.81879 * 268.14850 * 12 9 7 41 41 H 1.08991 * 110.99485 * 144.67421 * 12 9 7 42 42 H 1.00900 * 110.99591 * 146.79316 * 15 13 6 43 43 H 1.09003 * 109.47588 * 60.00369 * 16 15 13 44 44 H 1.09002 * 109.47411 * 299.99704 * 16 15 13 45 45 H 1.09003 * 109.47191 * 171.03569 * 18 17 16 46 46 H 1.08992 * 109.47218 * 291.03490 * 18 17 16 47 47 H 1.09001 * 109.47233 * 51.04068 * 18 17 16 48 48 H 1.08996 * 109.47051 * 299.99817 * 19 17 16 49 49 H 1.09002 * 109.46852 * 60.00189 * 19 17 16 50 50 H 1.09000 * 109.47211 * 179.97438 * 19 17 16 51 51 H 0.96998 * 119.99522 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2920 2.3758 0.0005 5 6 1.9231 3.6030 0.0011 6 6 3.3066 3.6774 0.0016 7 6 4.0599 2.5181 0.0011 8 6 3.4298 1.2857 0.0005 9 6 5.5333 2.8654 0.0012 10 6 6.2873 1.9809 -0.9938 11 6 6.1192 2.7023 1.4051 12 6 5.6001 4.3433 -0.4386 13 6 4.2228 4.8827 0.0017 14 1 3.8658 5.6311 -0.7058 15 7 4.3083 5.4578 1.3508 16 6 3.2588 6.4638 1.5616 17 6 3.3804 7.0392 2.9741 18 6 4.7538 7.6919 3.1425 19 6 3.2214 5.9140 3.9986 20 6 2.3041 8.0717 3.1902 21 1 1.5574 8.2409 2.4286 22 6 2.2727 8.8004 4.3603 23 7 1.6167 9.9392 4.4085 24 14 3.1620 8.1699 5.8773 25 1 2.2854 7.2172 6.6048 26 1 4.4110 7.4791 5.4676 27 1 3.4965 9.3120 6.7655 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2134 2.3220 0.0002 32 1 1.3360 4.5095 0.0019 33 1 4.0182 0.3800 0.0005 34 1 7.3310 2.2920 -1.0384 35 1 6.2317 0.9413 -0.6706 36 1 5.8364 2.0789 -1.9814 37 1 5.5498 3.3091 2.1092 38 1 6.0654 1.6549 1.7019 39 1 7.1598 3.0268 1.4044 40 1 5.7187 4.4209 -1.5194 41 1 6.4046 4.8681 0.0765 42 1 5.2230 5.8485 1.5200 43 1 2.2803 5.9989 1.4413 44 1 3.3723 7.2657 0.8321 45 1 4.7835 8.2380 4.0853 46 1 5.5245 6.9213 3.1446 47 1 4.9319 8.3817 2.3174 48 1 2.2429 5.4491 3.8787 49 1 4.0001 5.1675 3.8421 50 1 3.3084 6.3238 5.0049 51 1 1.5950 10.4519 5.2316 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414169440.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:17 Heat of formation + Delta-G solvation = -3.908786 kcal Electronic energy + Delta-G solvation = -28004.290042 eV Core-core repulsion = 24483.033918 eV Total energy + Delta-G solvation = -3521.256123 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.76014 -39.09799 -36.96028 -35.64056 -33.93429 -31.74335 -30.49655 -29.81350 -28.25124 -27.24719 -27.07174 -26.12612 -25.09479 -24.22510 -22.98159 -22.69307 -20.37180 -19.47677 -18.65626 -17.37651 -16.25349 -16.04981 -15.79478 -15.56823 -15.50836 -14.86718 -14.67595 -14.50650 -13.92361 -13.45380 -13.41921 -13.21349 -12.96633 -12.76437 -12.72139 -12.54416 -12.44847 -12.19855 -12.01989 -11.97475 -11.74601 -11.54636 -11.34811 -11.29794 -11.14536 -10.95821 -10.69748 -10.42647 -10.35501 -10.23845 -10.05719 -9.93341 -9.80240 -9.00642 -8.69588 -8.52821 -8.26568 -7.99852 -7.79871 -6.09226 -4.00299 1.45090 1.56099 3.19480 3.34220 3.44690 3.46165 3.82024 4.45882 4.46481 4.49431 4.77339 4.86325 4.96860 5.00850 5.02816 5.08594 5.23704 5.24575 5.31129 5.32294 5.36711 5.49749 5.61090 5.64809 5.75419 5.78419 5.86791 5.89744 5.97277 6.05016 6.07896 6.12754 6.18567 6.33127 6.34405 6.39187 6.48512 6.51836 6.58522 6.67339 6.73471 6.81415 6.86954 6.91127 6.97630 7.08195 7.41618 7.42470 7.56643 7.62515 7.84959 7.99363 8.56902 8.98561 9.60005 11.04131 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014072 B = 0.003986 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.334758 B = 7023.118440 C = 8098.638032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.120 3.880 4 C -0.208 4.208 5 C -0.057 4.057 6 C -0.100 4.100 7 C -0.038 4.038 8 C -0.141 4.141 9 C -0.016 4.016 10 C -0.139 4.139 11 C -0.137 4.137 12 C -0.114 4.114 13 C 0.126 3.874 14 H 0.050 0.950 15 N -0.676 5.676 16 C 0.085 3.915 17 C 0.043 3.957 18 C -0.142 4.142 19 C -0.132 4.132 20 C -0.515 4.515 21 H 0.069 0.931 22 C 0.077 3.923 23 N -0.892 5.892 24 Si 0.876 3.124 25 H -0.287 1.287 26 H -0.244 1.244 27 H -0.307 1.307 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.096 0.904 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.339 0.661 43 H 0.062 0.938 44 H 0.022 0.978 45 H 0.052 0.948 46 H 0.027 0.973 47 H 0.039 0.961 48 H 0.041 0.959 49 H 0.041 0.959 50 H 0.030 0.970 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.655 -17.796 -11.353 21.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.076 3.924 4 C -0.226 4.226 5 C -0.076 4.076 6 C -0.101 4.101 7 C -0.038 4.038 8 C -0.160 4.160 9 C -0.016 4.016 10 C -0.196 4.196 11 C -0.194 4.194 12 C -0.152 4.152 13 C 0.016 3.984 14 H 0.067 0.933 15 N -0.309 5.309 16 C -0.043 4.043 17 C 0.042 3.958 18 C -0.200 4.200 19 C -0.189 4.189 20 C -0.553 4.553 21 H 0.087 0.913 22 C -0.125 4.125 23 N -0.529 5.529 24 Si 0.708 3.292 25 H -0.214 1.214 26 H -0.170 1.170 27 H -0.235 1.235 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.115 0.885 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.159 0.841 43 H 0.080 0.920 44 H 0.040 0.960 45 H 0.071 0.929 46 H 0.046 0.954 47 H 0.058 0.942 48 H 0.060 0.940 49 H 0.060 0.940 50 H 0.048 0.952 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.325 -18.313 -10.963 21.998 hybrid contribution 0.110 0.648 0.507 0.830 sum 5.436 -17.665 -10.456 21.235 Atomic orbital electron populations 1.23011 0.78616 1.03558 1.01447 1.86020 1.21176 1.27168 1.89162 1.18748 0.92025 0.83941 0.97715 1.21059 0.99715 0.92123 1.09728 1.20462 0.93538 0.97017 0.96560 1.20347 0.92955 0.95244 1.01587 1.20150 0.95219 0.92001 0.96447 1.19628 0.90937 0.97459 1.07943 1.19985 0.90389 0.94762 0.96469 1.21875 0.99763 0.99385 0.98615 1.21853 1.00330 1.01943 0.95321 1.22640 0.96819 0.94811 1.00937 1.20829 0.92941 0.93539 0.91089 0.93258 1.60571 1.08013 1.38035 1.24232 1.22005 0.93701 0.90771 0.97799 1.18428 0.93850 0.92877 0.90640 1.22288 0.97536 0.98924 1.01236 1.22136 1.00053 0.98480 0.98261 1.20819 1.12555 1.18216 1.03710 0.91264 1.24939 0.94905 0.93717 0.98962 1.70033 1.43793 1.11757 1.27275 0.87477 0.81525 0.77229 0.82968 1.21435 1.17001 1.23532 0.92598 0.92792 0.88544 0.85677 0.86020 0.86010 0.92407 0.92578 0.92625 0.90265 0.93062 0.92672 0.90750 0.90190 0.84116 0.91991 0.95997 0.92936 0.95415 0.94189 0.93967 0.94015 0.95161 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -3.98 10.50 -19.43 -0.20 -4.18 16 3 C 0.12 1.63 6.68 -39.26 -0.26 1.36 16 4 C -0.21 -2.76 9.04 -39.48 -0.36 -3.12 16 5 C -0.06 -0.83 9.75 -39.55 -0.39 -1.22 16 6 C -0.10 -1.45 5.74 -104.16 -0.60 -2.05 16 7 C -0.04 -0.50 4.92 -104.22 -0.51 -1.01 16 8 C -0.14 -1.88 9.72 -39.39 -0.38 -2.26 16 9 C -0.02 -0.18 0.89 -154.62 -0.14 -0.32 16 10 C -0.14 -1.30 8.30 37.16 0.31 -0.99 16 11 C -0.14 -1.57 8.48 37.16 0.32 -1.25 16 12 C -0.11 -1.28 5.75 -25.33 -0.15 -1.42 16 13 C 0.13 1.74 3.20 -67.82 -0.22 1.53 16 14 H 0.05 0.70 7.82 -51.93 -0.41 0.30 16 15 N -0.68 -10.72 4.91 -106.84 -0.52 -11.24 16 16 C 0.09 1.65 4.42 -3.82 -0.02 1.63 16 17 C 0.04 0.97 0.57 -155.66 -0.09 0.88 16 18 C -0.14 -3.01 7.22 37.16 0.27 -2.74 16 19 C -0.13 -2.92 7.64 37.16 0.28 -2.63 16 20 C -0.52 -14.12 8.60 -34.44 -0.30 -14.41 16 21 H 0.07 2.06 7.99 -52.49 -0.42 1.64 16 22 C 0.08 2.20 5.23 -17.82 -0.09 2.10 16 23 N -0.89 -27.11 13.96 55.43 0.77 -26.34 16 24 Si 0.88 21.86 22.97 -169.99 -3.91 17.95 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.24 -5.64 4.61 56.52 0.26 -5.38 16 27 H -0.31 -7.77 7.11 56.52 0.40 -7.37 16 28 H 0.06 0.46 7.66 -51.93 -0.40 0.07 16 29 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.13 1.40 6.31 -52.48 -0.33 1.07 16 32 H 0.12 1.74 7.64 -52.48 -0.40 1.34 16 33 H 0.12 1.46 7.98 -52.48 -0.42 1.04 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.50 8.07 -51.93 -0.42 0.08 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.08 1.08 7.48 -51.93 -0.39 0.69 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.74 7.91 -51.93 -0.41 0.33 16 41 H 0.08 0.83 7.31 -51.93 -0.38 0.45 16 42 H 0.34 5.11 6.29 -39.29 -0.25 4.87 16 43 H 0.06 1.25 7.43 -51.93 -0.39 0.86 16 44 H 0.02 0.43 8.07 -51.93 -0.42 0.01 16 45 H 0.05 1.19 4.03 -51.93 -0.21 0.98 16 46 H 0.03 0.50 7.03 -51.93 -0.37 0.14 16 47 H 0.04 0.82 8.12 -51.93 -0.42 0.39 16 48 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.04 0.83 7.60 -51.93 -0.39 0.44 16 50 H 0.03 0.70 2.62 -51.93 -0.14 0.56 16 51 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 379.31 15.07 5.72 5.72 Total: -1.00 -30.52 379.31 -8.23 -38.75 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -8.76 Total: 4.02 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: -1.33 Total: -24.68 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.25 Total: -37.58 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -0.20 Total: -4.18 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -3.91 Total: 17.95 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.52 -8.23 -38.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414169440.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.839 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds