Wall clock time and date at job start Tue Mar 31 2020 11:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35903 * 116.99615 * 2 1 4 4 C 1.38751 * 120.09260 * 0.02562 * 3 2 1 5 5 C 1.38001 * 119.87589 * 179.97438 * 4 3 2 6 6 C 1.38548 * 120.29145 * 359.97438 * 5 4 3 7 7 C 1.38260 * 119.93616 * 0.02562 * 6 5 4 8 8 C 1.38410 * 119.90384 * 359.97438 * 7 6 5 9 9 C 1.51380 * 109.75173 * 179.97438 * 7 6 5 10 10 C 1.52998 * 110.29995 * 223.87755 * 9 7 6 11 11 C 1.53000 * 110.38565 * 101.76949 * 9 7 6 12 12 C 1.54341 * 105.17503 * 342.80180 * 9 7 6 13 13 C 1.51394 * 130.31828 * 179.97438 * 6 5 4 14 14 H 1.08998 * 110.38743 * 316.19387 * 13 6 5 15 15 N 1.46904 * 110.30050 * 78.30268 * 13 6 5 16 16 C 1.46895 * 110.99580 * 270.74711 * 15 13 6 17 17 C 1.53006 * 109.46877 * 180.02562 * 16 15 13 18 18 C 1.52996 * 109.46985 * 59.99870 * 17 16 15 19 19 C 1.52999 * 109.47033 * 299.99695 * 17 16 15 20 20 C 1.50704 * 109.46765 * 179.97438 * 17 16 15 21 21 H 1.07993 * 120.00244 * 4.71985 * 20 17 16 22 22 C 1.37883 * 119.99712 * 184.71592 * 20 17 16 23 23 N 1.31516 * 120.00085 * 159.99907 * 22 20 17 24 24 Si 1.86802 * 119.99805 * 339.99920 * 22 20 17 25 25 H 1.48503 * 109.47177 * 275.37563 * 24 22 20 26 26 H 1.48493 * 109.47288 * 35.37199 * 24 22 20 27 27 H 1.48500 * 109.47198 * 155.37551 * 24 22 20 28 28 H 1.09003 * 109.47437 * 300.00097 * 1 2 3 29 29 H 1.08992 * 109.47348 * 60.00666 * 1 2 3 30 30 H 1.09001 * 109.46850 * 180.02562 * 1 2 3 31 31 H 1.08003 * 120.05930 * 359.95554 * 4 3 2 32 32 H 1.08004 * 119.85455 * 180.02562 * 5 4 3 33 33 H 1.08006 * 119.90783 * 180.02562 * 8 7 6 34 34 H 1.09002 * 109.47190 * 175.75075 * 10 9 7 35 35 H 1.09001 * 109.47541 * 295.74539 * 10 9 7 36 36 H 1.09004 * 109.47551 * 55.74884 * 10 9 7 37 37 H 1.09000 * 109.47033 * 304.20178 * 11 9 7 38 38 H 1.09001 * 109.46996 * 64.20067 * 11 9 7 39 39 H 1.08999 * 109.46760 * 184.20106 * 11 9 7 40 40 H 1.09004 * 110.81879 * 268.14850 * 12 9 7 41 41 H 1.08991 * 110.99485 * 144.67421 * 12 9 7 42 42 H 1.00900 * 110.99591 * 146.79316 * 15 13 6 43 43 H 1.09003 * 109.47588 * 60.00369 * 16 15 13 44 44 H 1.09002 * 109.47411 * 299.99704 * 16 15 13 45 45 H 1.09003 * 109.47191 * 171.03569 * 18 17 16 46 46 H 1.08992 * 109.47218 * 291.03490 * 18 17 16 47 47 H 1.09001 * 109.47233 * 51.04068 * 18 17 16 48 48 H 1.08996 * 109.47051 * 299.99817 * 19 17 16 49 49 H 1.09002 * 109.46852 * 60.00189 * 19 17 16 50 50 H 1.09000 * 109.47211 * 179.97438 * 19 17 16 51 51 H 0.96998 * 119.99522 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2920 2.3758 0.0005 5 6 1.9231 3.6030 0.0011 6 6 3.3066 3.6774 0.0016 7 6 4.0599 2.5181 0.0011 8 6 3.4298 1.2857 0.0005 9 6 5.5333 2.8654 0.0012 10 6 6.2873 1.9809 -0.9938 11 6 6.1192 2.7023 1.4051 12 6 5.6001 4.3433 -0.4386 13 6 4.2228 4.8827 0.0017 14 1 3.8658 5.6311 -0.7058 15 7 4.3083 5.4578 1.3508 16 6 3.2588 6.4638 1.5616 17 6 3.3804 7.0392 2.9741 18 6 4.7538 7.6919 3.1425 19 6 3.2214 5.9140 3.9986 20 6 2.3041 8.0717 3.1902 21 1 1.5574 8.2409 2.4286 22 6 2.2727 8.8004 4.3603 23 7 1.6167 9.9392 4.4085 24 14 3.1620 8.1699 5.8773 25 1 2.2854 7.2172 6.6048 26 1 4.4110 7.4791 5.4676 27 1 3.4965 9.3120 6.7655 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2134 2.3220 0.0002 32 1 1.3360 4.5095 0.0019 33 1 4.0182 0.3800 0.0005 34 1 7.3310 2.2920 -1.0384 35 1 6.2317 0.9413 -0.6706 36 1 5.8364 2.0789 -1.9814 37 1 5.5498 3.3091 2.1092 38 1 6.0654 1.6549 1.7019 39 1 7.1598 3.0268 1.4044 40 1 5.7187 4.4209 -1.5194 41 1 6.4046 4.8681 0.0765 42 1 5.2230 5.8485 1.5200 43 1 2.2803 5.9989 1.4413 44 1 3.3723 7.2657 0.8321 45 1 4.7835 8.2380 4.0853 46 1 5.5245 6.9213 3.1446 47 1 4.9319 8.3817 2.3174 48 1 2.2429 5.4491 3.8787 49 1 4.0001 5.1675 3.8421 50 1 3.3084 6.3238 5.0049 51 1 1.5950 10.4519 5.2316 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414169440.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:16 Heat of formation + Delta-G solvation = -21.758686 kcal Electronic energy + Delta-G solvation = -28005.064071 eV Core-core repulsion = 24483.033918 eV Total energy + Delta-G solvation = -3522.030153 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.75299 -40.05446 -38.58218 -36.62079 -35.34219 -33.69098 -31.63035 -30.88898 -29.24584 -28.03624 -27.93049 -27.82835 -27.04443 -25.79588 -24.04315 -23.72136 -21.43556 -20.68507 -20.20348 -18.32499 -18.04253 -17.33015 -17.15097 -16.68676 -16.59392 -16.13346 -15.98176 -15.57909 -14.96347 -14.78292 -14.75847 -14.53361 -14.32755 -14.21553 -14.09395 -13.69226 -13.58680 -13.54678 -13.37951 -13.07414 -12.94664 -12.55557 -12.47107 -12.38528 -12.27016 -12.13341 -11.99348 -11.93610 -11.83082 -11.61426 -11.49925 -11.32443 -11.27162 -10.95392 -10.49817 -10.27058 -9.71370 -9.21611 -8.95600 -8.30760 -6.24740 0.42463 0.50087 1.35869 1.39825 1.49046 2.34709 2.36483 2.76345 3.05882 3.44355 3.55309 3.66695 3.94657 4.00912 4.12159 4.26035 4.31608 4.34644 4.37935 4.39153 4.44991 4.46404 4.53568 4.62084 4.69821 4.71689 4.76357 4.88040 4.91714 4.94090 4.97061 4.99451 4.99989 5.08620 5.12131 5.15722 5.24134 5.27100 5.28223 5.33815 5.38202 5.40862 5.51218 5.62119 5.64433 5.77890 5.81601 5.84709 5.90304 6.23645 6.37949 6.47184 6.66540 6.81839 7.38462 8.86547 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014072 B = 0.003986 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.334758 B = 7023.118440 C = 8098.638032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.333 6.333 3 C 0.116 3.884 4 C -0.214 4.214 5 C -0.076 4.076 6 C -0.122 4.122 7 C -0.037 4.037 8 C -0.150 4.150 9 C -0.014 4.014 10 C -0.135 4.135 11 C -0.134 4.134 12 C -0.107 4.107 13 C 0.124 3.876 14 H 0.041 0.959 15 N -0.668 5.668 16 C 0.102 3.898 17 C 0.039 3.961 18 C -0.139 4.139 19 C -0.126 4.126 20 C -0.517 4.517 21 H 0.026 0.974 22 C 0.023 3.977 23 N -0.942 5.942 24 Si 0.931 3.069 25 H -0.290 1.290 26 H -0.207 1.207 27 H -0.312 1.312 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.122 0.878 31 H 0.140 0.860 32 H 0.111 0.889 33 H 0.135 0.865 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.347 0.653 43 H 0.045 0.955 44 H 0.010 0.990 45 H 0.037 0.963 46 H 0.064 0.936 47 H 0.040 0.960 48 H 0.030 0.970 49 H 0.067 0.933 50 H 0.023 0.977 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.351 -20.326 -11.552 24.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.247 6.247 3 C 0.071 3.929 4 C -0.233 4.233 5 C -0.095 4.095 6 C -0.123 4.123 7 C -0.038 4.038 8 C -0.169 4.169 9 C -0.014 4.014 10 C -0.192 4.192 11 C -0.191 4.191 12 C -0.145 4.145 13 C 0.015 3.985 14 H 0.059 0.941 15 N -0.301 5.301 16 C -0.027 4.027 17 C 0.038 3.962 18 C -0.196 4.196 19 C -0.183 4.183 20 C -0.555 4.555 21 H 0.044 0.956 22 C -0.175 4.175 23 N -0.582 5.582 24 Si 0.761 3.239 25 H -0.217 1.217 26 H -0.130 1.130 27 H -0.241 1.241 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.140 0.860 31 H 0.158 0.842 32 H 0.129 0.871 33 H 0.153 0.847 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.107 0.893 41 H 0.112 0.888 42 H 0.168 0.832 43 H 0.064 0.936 44 H 0.028 0.972 45 H 0.056 0.944 46 H 0.083 0.917 47 H 0.059 0.941 48 H 0.049 0.951 49 H 0.086 0.914 50 H 0.041 0.959 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.038 -20.873 -11.182 25.007 hybrid contribution -0.875 1.391 0.452 1.705 sum 7.162 -19.481 -10.730 23.366 Atomic orbital electron populations 1.23294 0.76758 1.05464 1.01905 1.86009 1.23139 1.26580 1.88941 1.18920 0.92428 0.84333 0.97251 1.21216 1.00615 0.91792 1.09631 1.20568 0.94061 0.97216 0.97650 1.20509 0.93048 0.96061 1.02657 1.20431 0.96435 0.91481 0.95408 1.19876 0.91152 0.98044 1.07787 1.20034 0.89174 0.95072 0.97132 1.21840 1.00371 0.99168 0.97823 1.21821 1.01015 1.01725 0.94587 1.22663 0.95142 0.94655 1.02013 1.20905 0.94861 0.93153 0.89629 0.94102 1.60469 1.07296 1.36323 1.26023 1.21629 0.94345 0.91050 0.95710 1.18423 0.93073 0.92044 0.92657 1.22192 0.97281 0.99732 1.00428 1.22046 1.00402 0.98540 0.97295 1.21168 1.12783 1.19124 1.02398 0.95571 1.25726 0.96148 0.93639 1.01968 1.70166 1.46483 1.13472 1.28058 0.86578 0.81975 0.76569 0.78804 1.21724 1.13019 1.24141 0.92539 0.91921 0.85996 0.84246 0.87071 0.84750 0.90712 0.92196 0.92700 0.92496 0.92855 0.90780 0.89279 0.88786 0.83220 0.93648 0.97179 0.94436 0.91713 0.94127 0.95125 0.91446 0.95894 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.33 -7.77 10.50 -92.45 -0.97 -8.74 16 3 C 0.12 3.02 6.68 22.48 0.15 3.17 16 4 C -0.21 -5.66 9.04 22.34 0.20 -5.46 16 5 C -0.08 -2.25 9.75 22.29 0.22 -2.03 16 6 C -0.12 -3.44 5.74 -19.56 -0.11 -3.56 16 7 C -0.04 -0.92 4.92 -19.60 -0.10 -1.02 16 8 C -0.15 -3.77 9.72 22.39 0.22 -3.55 16 9 C -0.01 -0.27 0.89 -52.26 -0.05 -0.32 16 10 C -0.13 -2.05 8.30 71.98 0.60 -1.45 16 11 C -0.13 -2.62 8.48 71.98 0.61 -2.01 16 12 C -0.11 -2.08 5.75 31.50 0.18 -1.89 16 13 C 0.12 3.28 3.20 44.84 0.14 3.42 16 14 H 0.04 1.15 7.82 -2.39 -0.02 1.13 16 15 N -0.67 -20.06 4.91 -491.93 -2.41 -22.47 16 16 C 0.10 3.93 4.42 86.31 0.38 4.32 16 17 C 0.04 1.73 0.57 -52.93 -0.03 1.70 16 18 C -0.14 -5.54 7.22 71.98 0.52 -5.02 16 19 C -0.13 -5.32 7.64 71.98 0.55 -4.77 16 20 C -0.52 -29.11 8.60 25.60 0.22 -28.89 16 21 H 0.03 1.65 7.99 -2.91 -0.02 1.62 16 22 C 0.02 1.33 5.23 84.66 0.44 1.77 16 23 N -0.94 -59.32 13.96 21.45 0.30 -59.02 16 24 Si 0.93 44.88 22.97 68.60 1.58 46.46 16 25 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 26 H -0.21 -8.70 4.61 99.48 0.46 -8.25 16 27 H -0.31 -15.26 7.11 99.48 0.71 -14.55 16 28 H 0.06 0.87 7.66 -2.39 -0.02 0.85 16 29 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16 30 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.14 3.10 6.31 -2.91 -0.02 3.08 16 32 H 0.11 3.38 7.64 -2.91 -0.02 3.36 16 33 H 0.13 2.95 7.98 -2.91 -0.02 2.93 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.06 0.87 8.07 -2.39 -0.02 0.85 16 36 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.06 1.38 7.48 -2.39 -0.02 1.36 16 38 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.09 1.49 7.91 -2.38 -0.02 1.48 16 41 H 0.09 1.58 7.31 -2.39 -0.02 1.57 16 42 H 0.35 9.40 6.29 -89.69 -0.56 8.83 16 43 H 0.04 1.89 7.43 -2.39 -0.02 1.87 16 44 H 0.01 0.41 8.07 -2.39 -0.02 0.39 16 45 H 0.04 1.60 4.03 -2.39 -0.01 1.59 16 46 H 0.06 2.10 7.03 -2.39 -0.02 2.08 16 47 H 0.04 1.58 8.12 -2.39 -0.02 1.56 16 48 H 0.03 1.32 8.14 -2.39 -0.02 1.31 16 49 H 0.07 2.49 7.60 -2.39 -0.02 2.48 16 50 H 0.02 0.99 2.62 -2.39 -0.01 0.99 16 51 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -67.83 379.31 3.85 -63.98 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.10 Total: 23.97 kcal Atomic # 6 Polarization: -49.43 SS G_CDS: 5.26 Total: -44.17 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -2.11 Total: -81.49 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -0.97 Total: -8.74 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.58 Total: 46.46 kcal Total: -67.83 3.85 -63.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414169440.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.218 kcal (2) G-P(sol) polarization free energy of solvation -67.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds