Wall clock time and date at job start Tue Mar 31 2020 11:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35900 * 117.00118 * 2 1 4 4 C 1.38748 * 120.08934 * 0.02562 * 3 2 1 5 5 C 1.38006 * 119.87446 * 180.02562 * 4 3 2 6 6 C 1.38543 * 120.29442 * 359.92288 * 5 4 3 7 7 C 1.38266 * 119.93387 * 0.08096 * 6 5 4 8 8 C 1.38409 * 119.90756 * 359.95333 * 7 6 5 9 9 C 1.51383 * 109.75625 * 179.97438 * 7 6 5 10 10 C 1.53001 * 110.30224 * 258.27935 * 9 7 6 11 11 C 1.53000 * 110.30417 * 136.12346 * 9 7 6 12 12 C 1.54347 * 105.16778 * 17.20072 * 9 7 6 13 13 C 1.51394 * 130.32877 * 180.02562 * 6 5 4 14 14 H 1.08994 * 110.30131 * 43.89247 * 13 6 5 15 15 N 1.46902 * 110.29837 * 281.75044 * 13 6 5 16 16 C 1.46898 * 111.00144 * 89.24376 * 15 13 6 17 17 C 1.53009 * 109.46878 * 179.97438 * 16 15 13 18 18 C 1.52995 * 109.46997 * 300.00308 * 17 16 15 19 19 C 1.52999 * 109.46900 * 60.00349 * 17 16 15 20 20 C 1.50703 * 109.46719 * 180.02562 * 17 16 15 21 21 H 1.08003 * 120.00121 * 0.02562 * 20 17 16 22 22 C 1.37878 * 119.99642 * 180.02562 * 20 17 16 23 23 N 1.31515 * 119.99938 * 359.97438 * 22 20 17 24 24 Si 1.86800 * 119.99841 * 180.02562 * 22 20 17 25 25 H 1.48497 * 109.47223 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.46965 * 119.99682 * 24 22 20 27 27 H 1.48498 * 109.46941 * 239.99673 * 24 22 20 28 28 H 1.08994 * 109.47101 * 59.99920 * 1 2 3 29 29 H 1.09001 * 109.47161 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46828 * 299.99626 * 1 2 3 31 31 H 1.07996 * 120.06518 * 0.02562 * 4 3 2 32 32 H 1.08000 * 119.85449 * 179.97438 * 5 4 3 33 33 H 1.08002 * 119.91708 * 180.02562 * 8 7 6 34 34 H 1.08994 * 109.46768 * 175.74615 * 10 9 7 35 35 H 1.09000 * 109.46621 * 295.74905 * 10 9 7 36 36 H 1.08997 * 109.46989 * 55.74021 * 10 9 7 37 37 H 1.08999 * 109.47111 * 304.25888 * 11 9 7 38 38 H 1.09005 * 109.46481 * 64.25280 * 11 9 7 39 39 H 1.08997 * 109.46899 * 184.24893 * 11 9 7 40 40 H 1.08999 * 110.81981 * 91.85760 * 12 9 7 41 41 H 1.08997 * 110.82108 * 215.20334 * 12 9 7 42 42 H 1.00904 * 111.00042 * 213.20131 * 15 13 6 43 43 H 1.09000 * 109.47320 * 299.99688 * 16 15 13 44 44 H 1.08999 * 109.47063 * 60.00503 * 16 15 13 45 45 H 1.08990 * 109.47529 * 60.00291 * 18 17 16 46 46 H 1.09001 * 109.46817 * 180.02562 * 18 17 16 47 47 H 1.08999 * 109.47619 * 299.99609 * 18 17 16 48 48 H 1.09000 * 109.47428 * 59.99931 * 19 17 16 49 49 H 1.09001 * 109.46800 * 179.97438 * 19 17 16 50 50 H 1.09000 * 109.47318 * 300.00038 * 19 17 16 51 51 H 0.96998 * 119.99803 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2922 2.3757 0.0005 5 6 1.9234 3.6030 0.0000 6 6 3.3068 3.6774 0.0005 7 6 4.0601 2.5179 -0.0001 8 6 3.4300 1.2856 -0.0003 9 6 5.5336 2.8651 0.0001 10 6 6.1171 2.7038 -1.4051 11 6 6.2876 1.9795 0.9941 12 6 5.6004 4.3426 0.4413 13 6 4.2232 4.8825 0.0006 14 1 3.8654 5.6295 0.7091 15 7 4.3089 5.4577 -1.3484 16 6 3.2595 6.4638 -1.5593 17 6 3.3813 7.0393 -2.9718 18 6 4.7549 7.6919 -3.1399 19 6 3.2224 5.9141 -3.9963 20 6 2.3052 8.0719 -3.1879 21 1 1.6047 8.2956 -2.3969 22 6 2.2148 8.7310 -4.3956 23 7 3.0681 8.4588 -5.3587 24 14 0.8814 10.0114 -4.6634 25 1 0.0565 10.1316 -3.4344 26 1 1.5083 11.3224 -4.9695 27 1 0.0190 9.5979 -5.7993 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2136 2.3221 0.0014 32 1 1.3363 4.5095 0.0000 33 1 4.0183 0.3798 -0.0003 34 1 7.1575 3.0287 -1.4058 35 1 6.0632 1.6566 -1.7028 36 1 5.5462 3.3110 -2.1075 37 1 5.8368 2.0766 1.9818 38 1 6.2318 0.9403 0.6698 39 1 7.3313 2.2906 1.0388 40 1 5.7192 4.4191 1.5221 41 1 6.4071 4.8646 -0.0733 42 1 5.2237 5.8484 -1.5175 43 1 2.2810 5.9989 -1.4392 44 1 3.3730 7.2656 -0.8297 45 1 5.5334 6.9454 -2.9834 46 1 4.8415 8.1022 -4.1460 47 1 4.8681 8.4935 -2.4100 48 1 2.2439 5.4491 -3.8766 49 1 3.3088 6.3242 -5.0026 50 1 4.0010 5.1675 -3.8398 51 1 3.0043 8.9222 -6.2084 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414169446.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:20 Heat of formation + Delta-G solvation = -21.428838 kcal Electronic energy + Delta-G solvation = -27913.157366 eV Core-core repulsion = 24391.141516 eV Total energy + Delta-G solvation = -3522.015850 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.68800 -39.03161 -36.63154 -35.55971 -33.83091 -31.46237 -30.28872 -29.52016 -28.05451 -27.16978 -27.01004 -25.52715 -25.18254 -23.92350 -22.89236 -22.62420 -20.30954 -19.38240 -18.39056 -17.32231 -16.21052 -15.91564 -15.74114 -15.48650 -15.08004 -14.85933 -14.52801 -14.24292 -13.85445 -13.45180 -13.32695 -13.06074 -12.95863 -12.64194 -12.49236 -12.39429 -12.10719 -11.99294 -11.87957 -11.45620 -11.33463 -11.24513 -11.12438 -11.06545 -10.92886 -10.70164 -10.65521 -10.52240 -10.32996 -10.24762 -10.13077 -10.02794 -9.35896 -9.02007 -8.63288 -8.58899 -8.27639 -7.92015 -7.64281 -5.89647 -3.99746 1.51229 1.62528 3.24205 3.30646 3.39134 3.42393 3.88653 4.44785 4.54128 4.57304 4.89013 4.91255 5.03256 5.05910 5.09779 5.14853 5.31101 5.35110 5.35944 5.38352 5.44821 5.56166 5.67532 5.71909 5.82764 5.86107 5.94042 5.97175 6.07496 6.12703 6.20834 6.34730 6.39596 6.45048 6.46168 6.57232 6.61512 6.74904 6.86942 6.92068 6.95035 7.10498 7.20200 7.42417 7.47164 7.51282 7.76963 7.78339 7.86377 8.01961 8.24377 8.37531 8.58310 9.01927 9.65159 11.10764 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013742 B = 0.003834 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.062209 B = 7302.086331 C = 8632.851072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.120 3.880 4 C -0.208 4.208 5 C -0.058 4.058 6 C -0.098 4.098 7 C -0.038 4.038 8 C -0.141 4.141 9 C -0.016 4.016 10 C -0.138 4.138 11 C -0.139 4.139 12 C -0.114 4.114 13 C 0.125 3.875 14 H 0.046 0.954 15 N -0.671 5.671 16 C 0.076 3.924 17 C 0.070 3.930 18 C -0.132 4.132 19 C -0.116 4.116 20 C -0.505 4.505 21 H 0.051 0.949 22 C 0.065 3.935 23 N -0.884 5.884 24 Si 0.886 3.114 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.285 1.285 28 H 0.055 0.945 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.339 0.661 43 H 0.055 0.945 44 H 0.012 0.988 45 H 0.011 0.989 46 H 0.083 0.917 47 H 0.018 0.982 48 H 0.016 0.984 49 H 0.072 0.928 50 H 0.020 0.980 51 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.427 -14.156 12.440 19.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.075 3.925 4 C -0.227 4.227 5 C -0.076 4.076 6 C -0.099 4.099 7 C -0.038 4.038 8 C -0.159 4.159 9 C -0.016 4.016 10 C -0.195 4.195 11 C -0.196 4.196 12 C -0.152 4.152 13 C 0.015 3.985 14 H 0.064 0.936 15 N -0.304 5.304 16 C -0.052 4.052 17 C 0.069 3.931 18 C -0.190 4.190 19 C -0.174 4.174 20 C -0.543 4.543 21 H 0.069 0.931 22 C -0.135 4.135 23 N -0.523 5.523 24 Si 0.715 3.285 25 H -0.200 1.200 26 H -0.212 1.212 27 H -0.212 1.212 28 H 0.074 0.926 29 H 0.114 0.886 30 H 0.071 0.929 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.160 0.840 43 H 0.073 0.927 44 H 0.030 0.970 45 H 0.029 0.971 46 H 0.101 0.899 47 H 0.037 0.963 48 H 0.035 0.965 49 H 0.091 0.909 50 H 0.039 0.961 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.200 -14.777 11.956 19.135 hybrid contribution -0.948 1.615 0.282 1.894 sum 1.252 -13.162 12.239 18.017 Atomic orbital electron populations 1.23002 0.78689 1.03507 1.01407 1.86017 1.21117 1.27198 1.89205 1.18739 0.92025 0.83903 0.97852 1.21040 0.99638 0.92141 1.09838 1.20441 0.93564 0.96937 0.96670 1.20371 0.92948 0.95327 1.01291 1.20167 0.95278 0.91995 0.96392 1.19627 0.90919 0.97455 1.07934 1.19992 0.90348 0.94743 0.96505 1.21856 1.00388 1.01949 0.95286 1.21872 0.99761 0.99387 0.98586 1.22641 0.96924 0.94858 1.00784 1.20840 0.92799 0.93468 0.91383 0.93582 1.60569 1.08117 1.38158 1.23579 1.22201 0.93309 0.90460 0.99218 1.18081 0.93563 0.92738 0.88695 1.21828 0.96369 0.97505 1.03258 1.21607 0.97021 0.96378 1.02392 1.21146 1.13818 1.20647 0.98734 0.93066 1.24877 0.95784 0.96796 0.96092 1.69845 1.36034 1.42061 1.04359 0.86631 0.82187 0.81654 0.78040 1.19997 1.21185 1.21153 0.92616 0.88576 0.92851 0.85755 0.86156 0.86017 0.92677 0.93096 0.90095 0.92684 0.92590 0.92415 0.90880 0.90191 0.83990 0.92652 0.96989 0.97054 0.89874 0.96279 0.96494 0.90898 0.96133 0.93300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.13 10.50 -19.43 -0.20 -4.34 16 3 C 0.12 1.69 6.68 -39.26 -0.26 1.42 16 4 C -0.21 -2.89 9.04 -39.48 -0.36 -3.25 16 5 C -0.06 -0.88 9.74 -39.55 -0.39 -1.26 16 6 C -0.10 -1.51 5.74 -104.16 -0.60 -2.11 16 7 C -0.04 -0.53 4.92 -104.21 -0.51 -1.05 16 8 C -0.14 -1.97 9.72 -39.39 -0.38 -2.35 16 9 C -0.02 -0.19 0.89 -154.62 -0.14 -0.33 16 10 C -0.14 -1.72 8.48 37.16 0.31 -1.40 16 11 C -0.14 -1.38 8.30 37.16 0.31 -1.08 16 12 C -0.11 -1.38 5.75 -25.32 -0.15 -1.53 16 13 C 0.13 1.86 3.20 -67.82 -0.22 1.65 16 14 H 0.05 0.70 7.82 -51.93 -0.41 0.30 16 15 N -0.67 -11.61 4.89 -106.83 -0.52 -12.14 16 16 C 0.08 1.57 4.43 -3.82 -0.02 1.55 16 17 C 0.07 1.67 0.57 -155.66 -0.09 1.58 16 18 C -0.13 -3.07 7.92 37.15 0.29 -2.77 16 19 C -0.12 -2.85 8.09 37.16 0.30 -2.55 16 20 C -0.50 -13.54 8.01 -34.44 -0.28 -13.81 16 21 H 0.05 1.38 7.74 -52.48 -0.41 0.98 16 22 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 23 N -0.88 -24.46 9.35 55.43 0.52 -23.95 16 24 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 28 H 0.06 0.48 7.67 -51.93 -0.40 0.09 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 31 H 0.12 1.46 6.31 -52.49 -0.33 1.12 16 32 H 0.12 1.80 7.64 -52.49 -0.40 1.40 16 33 H 0.12 1.54 7.98 -52.49 -0.42 1.12 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 1.22 7.46 -51.93 -0.39 0.83 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.53 8.07 -51.93 -0.42 0.12 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.79 7.91 -51.93 -0.41 0.37 16 41 H 0.08 0.92 7.32 -51.93 -0.38 0.54 16 42 H 0.34 5.73 6.08 -39.29 -0.24 5.49 16 43 H 0.05 1.18 7.42 -51.93 -0.39 0.80 16 44 H 0.01 0.25 8.07 -51.93 -0.42 -0.17 16 45 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 46 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.07 1.96 6.07 -51.93 -0.32 1.65 16 50 H 0.02 0.46 7.60 -51.93 -0.39 0.06 16 51 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 388.81 15.07 5.86 5.86 Total: -1.00 -28.54 388.81 -9.49 -38.03 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -8.86 Total: 4.78 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: -1.26 Total: -24.36 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.00 Total: -36.08 kcal Atomic # 8 Polarization: -4.13 SS G_CDS: -0.20 Total: -4.34 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -28.54 -9.49 -38.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414169446.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.598 kcal (2) G-P(sol) polarization free energy of solvation -28.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds