Wall clock time and date at job start Tue Mar 31 2020 11:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35900 * 117.00118 * 2 1 4 4 C 1.38748 * 120.08934 * 0.02562 * 3 2 1 5 5 C 1.38006 * 119.87446 * 180.02562 * 4 3 2 6 6 C 1.38543 * 120.29442 * 359.92288 * 5 4 3 7 7 C 1.38266 * 119.93387 * 0.08096 * 6 5 4 8 8 C 1.38409 * 119.90756 * 359.95333 * 7 6 5 9 9 C 1.51383 * 109.75625 * 179.97438 * 7 6 5 10 10 C 1.53001 * 110.30224 * 258.27935 * 9 7 6 11 11 C 1.53000 * 110.30417 * 136.12346 * 9 7 6 12 12 C 1.54347 * 105.16778 * 17.20072 * 9 7 6 13 13 C 1.51394 * 130.32877 * 180.02562 * 6 5 4 14 14 H 1.08994 * 110.30131 * 43.89247 * 13 6 5 15 15 N 1.46902 * 110.29837 * 281.75044 * 13 6 5 16 16 C 1.46898 * 111.00144 * 89.24376 * 15 13 6 17 17 C 1.53009 * 109.46878 * 179.97438 * 16 15 13 18 18 C 1.52995 * 109.46997 * 300.00308 * 17 16 15 19 19 C 1.52999 * 109.46900 * 60.00349 * 17 16 15 20 20 C 1.50703 * 109.46719 * 180.02562 * 17 16 15 21 21 H 1.08003 * 120.00121 * 0.02562 * 20 17 16 22 22 C 1.37878 * 119.99642 * 180.02562 * 20 17 16 23 23 N 1.31515 * 119.99938 * 359.97438 * 22 20 17 24 24 Si 1.86800 * 119.99841 * 180.02562 * 22 20 17 25 25 H 1.48497 * 109.47223 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.46965 * 119.99682 * 24 22 20 27 27 H 1.48498 * 109.46941 * 239.99673 * 24 22 20 28 28 H 1.08994 * 109.47101 * 59.99920 * 1 2 3 29 29 H 1.09001 * 109.47161 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46828 * 299.99626 * 1 2 3 31 31 H 1.07996 * 120.06518 * 0.02562 * 4 3 2 32 32 H 1.08000 * 119.85449 * 179.97438 * 5 4 3 33 33 H 1.08002 * 119.91708 * 180.02562 * 8 7 6 34 34 H 1.08994 * 109.46768 * 175.74615 * 10 9 7 35 35 H 1.09000 * 109.46621 * 295.74905 * 10 9 7 36 36 H 1.08997 * 109.46989 * 55.74021 * 10 9 7 37 37 H 1.08999 * 109.47111 * 304.25888 * 11 9 7 38 38 H 1.09005 * 109.46481 * 64.25280 * 11 9 7 39 39 H 1.08997 * 109.46899 * 184.24893 * 11 9 7 40 40 H 1.08999 * 110.81981 * 91.85760 * 12 9 7 41 41 H 1.08997 * 110.82108 * 215.20334 * 12 9 7 42 42 H 1.00904 * 111.00042 * 213.20131 * 15 13 6 43 43 H 1.09000 * 109.47320 * 299.99688 * 16 15 13 44 44 H 1.08999 * 109.47063 * 60.00503 * 16 15 13 45 45 H 1.08990 * 109.47529 * 60.00291 * 18 17 16 46 46 H 1.09001 * 109.46817 * 180.02562 * 18 17 16 47 47 H 1.08999 * 109.47619 * 299.99609 * 18 17 16 48 48 H 1.09000 * 109.47428 * 59.99931 * 19 17 16 49 49 H 1.09001 * 109.46800 * 179.97438 * 19 17 16 50 50 H 1.09000 * 109.47318 * 300.00038 * 19 17 16 51 51 H 0.96998 * 119.99803 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2922 2.3757 0.0005 5 6 1.9234 3.6030 0.0000 6 6 3.3068 3.6774 0.0005 7 6 4.0601 2.5179 -0.0001 8 6 3.4300 1.2856 -0.0003 9 6 5.5336 2.8651 0.0001 10 6 6.1171 2.7038 -1.4051 11 6 6.2876 1.9795 0.9941 12 6 5.6004 4.3426 0.4413 13 6 4.2232 4.8825 0.0006 14 1 3.8654 5.6295 0.7091 15 7 4.3089 5.4577 -1.3484 16 6 3.2595 6.4638 -1.5593 17 6 3.3813 7.0393 -2.9718 18 6 4.7549 7.6919 -3.1399 19 6 3.2224 5.9141 -3.9963 20 6 2.3052 8.0719 -3.1879 21 1 1.6047 8.2956 -2.3969 22 6 2.2148 8.7310 -4.3956 23 7 3.0681 8.4588 -5.3587 24 14 0.8814 10.0114 -4.6634 25 1 0.0565 10.1316 -3.4344 26 1 1.5083 11.3224 -4.9695 27 1 0.0190 9.5979 -5.7993 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2136 2.3221 0.0014 32 1 1.3363 4.5095 0.0000 33 1 4.0183 0.3798 -0.0003 34 1 7.1575 3.0287 -1.4058 35 1 6.0632 1.6566 -1.7028 36 1 5.5462 3.3110 -2.1075 37 1 5.8368 2.0766 1.9818 38 1 6.2318 0.9403 0.6698 39 1 7.3313 2.2906 1.0388 40 1 5.7192 4.4191 1.5221 41 1 6.4071 4.8646 -0.0733 42 1 5.2237 5.8484 -1.5175 43 1 2.2810 5.9989 -1.4392 44 1 3.3730 7.2656 -0.8297 45 1 5.5334 6.9454 -2.9834 46 1 4.8415 8.1022 -4.1460 47 1 4.8681 8.4935 -2.4100 48 1 2.2439 5.4491 -3.8766 49 1 3.3088 6.3242 -5.0026 50 1 4.0010 5.1675 -3.8398 51 1 3.0043 8.9222 -6.2084 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414169446.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:19 Heat of formation + Delta-G solvation = -35.042407 kcal Electronic energy + Delta-G solvation = -27913.747694 eV Core-core repulsion = 24391.141516 eV Total energy + Delta-G solvation = -3522.606178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.74234 -40.03428 -38.32336 -36.60672 -35.33639 -33.18624 -31.46488 -30.75436 -29.13396 -28.04901 -27.88613 -27.46317 -27.22982 -25.47341 -24.03370 -23.71855 -21.43943 -20.50110 -20.14136 -18.32283 -17.87117 -17.20417 -16.83130 -16.64767 -16.57500 -16.19537 -15.81473 -15.54566 -14.97065 -14.79478 -14.54813 -14.33117 -14.26909 -13.96960 -13.77739 -13.53290 -13.37103 -13.18707 -13.00696 -12.94837 -12.86393 -12.59440 -12.46589 -12.36236 -12.28045 -12.13067 -12.08551 -12.07130 -11.98870 -11.57361 -11.41757 -11.30297 -11.25450 -10.82388 -10.57018 -10.33770 -9.70992 -9.14748 -8.93906 -7.96049 -6.12526 0.42885 0.50835 1.39905 1.43415 1.52464 2.35087 2.46244 2.77500 3.26014 3.47853 3.55599 3.69660 3.95141 4.01812 4.12408 4.29413 4.32652 4.38653 4.38808 4.44422 4.50965 4.58715 4.64713 4.71293 4.73486 4.78995 4.88443 4.90694 4.92678 4.98864 5.04274 5.08138 5.14245 5.19941 5.26488 5.27873 5.31533 5.38072 5.41177 5.43854 5.50384 5.56714 5.62753 5.71143 5.78996 5.81902 5.85754 6.20226 6.30295 6.36978 6.47769 6.52111 6.72426 6.97455 7.54873 9.02041 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013742 B = 0.003834 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.062209 B = 7302.086331 C = 8632.851072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.333 6.333 3 C 0.115 3.885 4 C -0.213 4.213 5 C -0.076 4.076 6 C -0.121 4.121 7 C -0.039 4.039 8 C -0.150 4.150 9 C -0.014 4.014 10 C -0.134 4.134 11 C -0.134 4.134 12 C -0.108 4.108 13 C 0.123 3.877 14 H 0.041 0.959 15 N -0.669 5.669 16 C 0.094 3.906 17 C 0.062 3.938 18 C -0.120 4.120 19 C -0.099 4.099 20 C -0.524 4.524 21 H 0.042 0.958 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.942 3.058 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.284 1.284 28 H 0.056 0.944 29 H 0.122 0.878 30 H 0.063 0.937 31 H 0.142 0.858 32 H 0.113 0.887 33 H 0.135 0.865 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.343 0.657 43 H 0.042 0.958 44 H 0.007 0.993 45 H 0.036 0.964 46 H 0.054 0.946 47 H 0.017 0.983 48 H 0.002 0.998 49 H 0.047 0.953 50 H 0.032 0.968 51 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.122 -15.243 13.624 20.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.247 6.247 3 C 0.070 3.930 4 C -0.232 4.232 5 C -0.095 4.095 6 C -0.122 4.122 7 C -0.040 4.040 8 C -0.169 4.169 9 C -0.014 4.014 10 C -0.192 4.192 11 C -0.191 4.191 12 C -0.145 4.145 13 C 0.014 3.986 14 H 0.059 0.941 15 N -0.303 5.303 16 C -0.035 4.035 17 C 0.062 3.938 18 C -0.178 4.178 19 C -0.157 4.157 20 C -0.563 4.563 21 H 0.060 0.940 22 C -0.176 4.176 23 N -0.542 5.542 24 Si 0.769 3.231 25 H -0.198 1.198 26 H -0.208 1.208 27 H -0.211 1.211 28 H 0.074 0.926 29 H 0.140 0.860 30 H 0.082 0.918 31 H 0.159 0.841 32 H 0.131 0.869 33 H 0.153 0.847 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.164 0.836 43 H 0.060 0.940 44 H 0.026 0.974 45 H 0.055 0.945 46 H 0.073 0.927 47 H 0.036 0.964 48 H 0.021 0.979 49 H 0.066 0.934 50 H 0.051 0.949 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.894 -15.873 13.151 20.815 hybrid contribution -1.229 1.872 -0.084 2.241 sum 1.665 -14.001 13.066 19.223 Atomic orbital electron populations 1.23299 0.76731 1.05480 1.01923 1.86008 1.23177 1.26534 1.88951 1.18910 0.92382 0.84387 0.97289 1.21219 1.00647 0.91721 1.09586 1.20571 0.93966 0.97303 0.97640 1.20531 0.93169 0.96026 1.02523 1.20441 0.96414 0.91593 0.95518 1.19874 0.91236 0.97966 1.07814 1.20030 0.89293 0.95121 0.96943 1.21813 1.00938 1.01644 0.94758 1.21831 1.00328 0.99116 0.97814 1.22661 0.95184 0.94696 1.01972 1.20919 0.94767 0.93205 0.89723 0.94097 1.60470 1.07290 1.36743 1.25754 1.21816 0.93884 0.90828 0.96965 1.18115 0.93216 0.92103 0.90390 1.21647 0.96768 0.97959 1.01405 1.21413 0.96574 0.96625 1.01125 1.21455 1.14560 1.21593 0.98676 0.93988 1.25505 0.97580 0.98470 0.96006 1.69972 1.37020 1.42669 1.04494 0.85762 0.79967 0.79610 0.77781 1.19761 1.20758 1.21055 0.92574 0.85973 0.91827 0.84061 0.86906 0.84747 0.90898 0.92773 0.92941 0.92508 0.92151 0.90745 0.89083 0.89217 0.83600 0.93983 0.97446 0.94527 0.92665 0.96351 0.97869 0.93446 0.94863 0.93389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.44 16 2 O -0.33 -8.10 10.50 -92.43 -0.97 -9.07 16 3 C 0.12 3.16 6.68 22.48 0.15 3.31 16 4 C -0.21 -5.87 9.04 22.34 0.20 -5.66 16 5 C -0.08 -2.35 9.74 22.29 0.22 -2.13 16 6 C -0.12 -3.69 5.74 -19.56 -0.11 -3.80 16 7 C -0.04 -1.06 4.92 -19.60 -0.10 -1.15 16 8 C -0.15 -4.04 9.72 22.40 0.22 -3.82 16 9 C -0.01 -0.30 0.89 -52.25 -0.05 -0.35 16 10 C -0.13 -3.09 8.48 71.98 0.61 -2.48 16 11 C -0.13 -2.26 8.30 71.98 0.60 -1.66 16 12 C -0.11 -2.36 5.75 31.51 0.18 -2.18 16 13 C 0.12 3.58 3.20 44.85 0.14 3.72 16 14 H 0.04 1.23 7.82 -2.39 -0.02 1.21 16 15 N -0.67 -22.80 4.89 -491.92 -2.40 -25.20 16 16 C 0.09 3.90 4.43 86.31 0.38 4.28 16 17 C 0.06 3.01 0.57 -52.93 -0.03 2.98 16 18 C -0.12 -5.56 7.92 71.98 0.57 -4.99 16 19 C -0.10 -4.95 8.09 71.98 0.58 -4.37 16 20 C -0.52 -28.49 8.01 25.60 0.21 -28.29 16 21 H 0.04 2.30 7.74 -2.91 -0.02 2.28 16 22 C 0.02 1.27 5.15 84.65 0.44 1.71 16 23 N -0.90 -50.57 9.35 21.45 0.20 -50.37 16 24 Si 0.94 43.66 29.54 68.60 2.03 45.69 16 25 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 26 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 27 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 28 H 0.06 0.90 7.67 -2.39 -0.02 0.88 16 29 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.06 0.90 7.66 -2.39 -0.02 0.88 16 31 H 0.14 3.23 6.31 -2.91 -0.02 3.21 16 32 H 0.11 3.52 7.64 -2.91 -0.02 3.50 16 33 H 0.13 3.17 7.98 -2.91 -0.02 3.14 16 34 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.05 1.51 7.46 -2.39 -0.02 1.49 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.06 0.97 8.07 -2.38 -0.02 0.96 16 39 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 40 H 0.09 1.70 7.91 -2.39 -0.02 1.68 16 41 H 0.09 1.81 7.32 -2.39 -0.02 1.79 16 42 H 0.34 11.12 6.08 -89.69 -0.55 10.58 16 43 H 0.04 1.84 7.42 -2.39 -0.02 1.82 16 44 H 0.01 0.31 8.07 -2.39 -0.02 0.29 16 45 H 0.04 1.47 6.57 -2.39 -0.02 1.45 16 46 H 0.05 2.89 6.07 -2.39 -0.01 2.87 16 47 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 49 H 0.05 2.59 6.07 -2.39 -0.01 2.57 16 50 H 0.03 1.51 7.60 -2.39 -0.02 1.50 16 51 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 Total: -1.00 -61.35 388.81 4.53 -56.82 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 0.35 Total: 25.59 kcal Atomic # 6 Polarization: -48.78 SS G_CDS: 5.32 Total: -43.46 kcal Atomic # 7 Polarization: -73.37 SS G_CDS: -2.20 Total: -75.57 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -0.97 Total: -9.07 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -61.35 4.53 -56.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414169446.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.782 kcal (2) G-P(sol) polarization free energy of solvation -61.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds