Wall clock time and date at job start Tue Mar 31 2020 12:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47222 * 2 1 4 4 C 1.52997 * 109.47265 * 239.99243 * 2 1 3 5 5 C 1.50704 * 109.46560 * 119.99730 * 2 1 3 6 6 C 1.38234 * 120.00277 * 60.00257 * 5 2 1 7 7 C 1.38230 * 119.99885 * 180.02562 * 6 5 2 8 8 C 1.38235 * 120.00326 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00236 * 179.70551 * 8 7 6 10 10 C 1.52996 * 109.47203 * 89.99823 * 9 8 7 11 11 C 1.53008 * 109.46986 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.46986 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.46822 * 180.02562 * 12 11 10 14 14 O 1.21273 * 120.00235 * 0.02562 * 13 12 11 15 15 N 1.34782 * 119.99777 * 179.97438 * 13 12 11 16 16 C 1.46498 * 119.99716 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.47034 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99777 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00353 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99696 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00143 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47125 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47299 * 120.00342 * 21 19 17 24 24 H 1.48506 * 109.46998 * 239.99920 * 21 19 17 25 25 C 1.38234 * 119.99814 * 359.97438 * 8 7 6 26 26 C 1.38235 * 119.99518 * 240.01939 * 5 2 1 27 27 H 1.08997 * 109.47500 * 300.00350 * 1 2 3 28 28 H 1.08999 * 109.46956 * 60.00519 * 1 2 3 29 29 H 1.08994 * 109.47499 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47229 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.46988 * 299.99613 * 3 2 1 32 32 H 1.08997 * 109.47601 * 59.99131 * 3 2 1 33 33 H 1.09000 * 109.47416 * 300.00969 * 4 2 1 34 34 H 1.08999 * 109.46939 * 60.00228 * 4 2 1 35 35 H 1.08993 * 109.47194 * 180.02562 * 4 2 1 36 36 H 1.07992 * 119.99701 * 359.97438 * 6 5 2 37 37 H 1.08000 * 120.00356 * 179.97438 * 7 6 5 38 38 H 1.09003 * 109.46871 * 209.99878 * 9 8 7 39 39 H 1.09001 * 109.47017 * 329.99216 * 9 8 7 40 40 H 1.08994 * 109.47503 * 299.99842 * 10 9 8 41 41 H 1.09001 * 109.47176 * 60.00391 * 10 9 8 42 42 H 1.08994 * 109.47029 * 300.00327 * 11 10 9 43 43 H 1.09001 * 109.46684 * 60.00285 * 11 10 9 44 44 H 1.09003 * 109.47252 * 300.00017 * 12 11 10 45 45 H 1.08996 * 109.47190 * 60.00120 * 12 11 10 46 46 H 0.96999 * 119.99866 * 0.02562 * 15 13 12 47 47 H 1.08994 * 109.47068 * 300.00416 * 16 15 13 48 48 H 1.09001 * 109.46870 * 60.00511 * 16 15 13 49 49 H 0.96996 * 120.00019 * 180.02562 * 20 19 17 50 50 H 1.08001 * 120.00299 * 179.97438 * 25 8 7 51 51 H 1.07997 * 120.00423 * 359.97438 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0322 -0.7104 1.2306 6 6 1.6982 -2.0338 1.4494 7 6 2.1585 -2.6852 2.5784 8 6 2.9531 -2.0133 3.4884 9 6 3.4494 -2.7215 4.7226 10 6 4.7956 -3.3843 4.4237 11 6 5.2997 -4.1028 5.6770 12 6 6.6456 -4.7661 5.3780 13 6 7.1418 -5.4743 6.6122 14 8 6.4836 -5.4511 7.6305 15 7 8.3166 -6.1342 6.5840 16 6 8.7993 -6.8222 7.7840 17 6 10.1249 -7.4757 7.4895 18 1 10.5641 -7.3870 6.5068 19 6 10.7775 -8.1859 8.4748 20 7 10.2429 -8.2934 9.6715 21 14 12.4209 -8.9952 8.1098 22 1 12.8021 -8.7278 6.6997 23 1 13.4578 -8.4413 9.0171 24 1 12.3090 -10.4607 8.3224 25 6 3.2880 -0.6902 3.2690 26 6 2.8265 -0.0384 2.1407 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6766 -1.7490 -1.2491 34 1 1.6767 -0.2076 -2.1391 35 1 3.1300 -0.7218 -1.2489 36 1 1.0771 -2.5585 0.7387 37 1 1.8973 -3.7190 2.7496 38 1 3.5709 -2.0006 5.5310 39 1 2.7277 -3.4824 5.0198 40 1 4.6742 -4.1053 3.6153 41 1 5.5172 -2.6234 4.1266 42 1 5.4212 -3.3816 6.4851 43 1 4.5782 -4.8637 5.9745 44 1 6.5236 -5.4875 4.5699 45 1 7.3673 -4.0056 5.0801 46 1 8.8429 -6.1531 5.7694 47 1 8.9217 -6.1008 8.5919 48 1 8.0772 -7.5825 8.0821 49 1 10.7021 -8.7927 10.3648 50 1 3.9085 -0.1651 3.9801 51 1 3.0876 0.9955 1.9697 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427640586.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:59 Heat of formation + Delta-G solvation = -81.532647 kcal Electronic energy + Delta-G solvation = -24834.490390 eV Core-core repulsion = 21309.868243 eV Total energy + Delta-G solvation = -3524.622146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.84117 -40.51177 -37.91537 -36.30018 -35.80409 -34.34744 -32.71572 -31.94935 -30.01885 -28.72278 -28.20879 -28.08471 -25.94251 -24.39321 -23.19780 -22.68839 -21.82592 -21.20446 -20.01305 -18.88199 -17.42181 -17.37074 -17.00303 -16.99650 -16.32456 -16.02930 -15.80204 -15.44577 -15.13845 -14.98605 -14.72653 -14.53349 -14.33050 -14.10777 -14.07649 -13.86576 -13.52318 -13.36323 -13.26324 -12.91148 -12.79728 -12.75429 -12.67539 -12.52676 -12.35321 -12.23160 -12.10037 -12.00638 -11.97593 -11.75313 -11.46591 -11.45258 -11.36720 -11.28052 -10.82388 -10.71196 -9.81562 -9.74779 -9.31715 -8.30213 -6.47085 0.49534 0.57169 1.42687 1.43947 1.57565 1.81247 2.32852 2.64076 2.89853 3.04664 3.68920 3.84245 3.85981 3.93960 4.03296 4.14113 4.17764 4.20534 4.22911 4.42018 4.46342 4.57325 4.63170 4.67875 4.73427 4.79708 4.81486 4.82457 4.91319 4.94758 4.95248 5.03220 5.04981 5.08628 5.13415 5.18286 5.22453 5.23204 5.24524 5.32848 5.35968 5.41382 5.45208 5.48435 5.51996 5.65776 5.70964 5.80774 5.83090 5.84696 6.19775 6.64831 6.93608 7.22838 7.53055 8.82355 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.032560 B = 0.001540 C = 0.001511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.732028 B =18175.556589 C =18528.382310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.030 4.030 3 C -0.144 4.144 4 C -0.137 4.137 5 C -0.082 4.082 6 C -0.121 4.121 7 C -0.126 4.126 8 C -0.092 4.092 9 C -0.080 4.080 10 C -0.099 4.099 11 C -0.099 4.099 12 C -0.126 4.126 13 C 0.489 3.511 14 O -0.608 6.608 15 N -0.711 5.711 16 C 0.263 3.737 17 C -0.556 4.556 18 H 0.084 0.916 19 C 0.002 3.998 20 N -0.932 5.932 21 Si 0.987 3.013 22 H -0.253 1.253 23 H -0.279 1.279 24 H -0.279 1.279 25 C -0.126 4.126 26 C -0.128 4.128 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.116 0.884 45 H 0.116 0.884 46 H 0.409 0.591 47 H -0.015 1.015 48 H -0.014 1.014 49 H 0.269 0.731 50 H 0.127 0.873 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.791 18.751 -25.017 35.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.030 4.030 3 C -0.201 4.201 4 C -0.194 4.194 5 C -0.082 4.082 6 C -0.139 4.139 7 C -0.144 4.144 8 C -0.092 4.092 9 C -0.117 4.117 10 C -0.136 4.136 11 C -0.137 4.137 12 C -0.165 4.165 13 C 0.277 3.723 14 O -0.491 6.491 15 N -0.361 5.361 16 C 0.140 3.860 17 C -0.594 4.594 18 H 0.103 0.897 19 C -0.197 4.197 20 N -0.570 5.570 21 Si 0.810 3.190 22 H -0.176 1.176 23 H -0.204 1.204 24 H -0.204 1.204 25 C -0.144 4.144 26 C -0.146 4.146 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.134 0.866 45 H 0.134 0.866 46 H 0.245 0.755 47 H 0.003 0.997 48 H 0.004 0.996 49 H 0.077 0.923 50 H 0.145 0.855 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.214 18.687 -24.135 35.545 hybrid contribution 0.919 -0.705 0.507 1.264 sum -17.295 17.981 -23.628 34.362 Atomic orbital electron populations 1.21878 0.93318 1.02143 1.02075 1.19540 0.95970 0.95319 0.92211 1.21958 1.01171 0.94574 1.02357 1.21878 1.00874 1.00319 0.96356 1.20024 0.97649 0.94175 0.96353 1.21129 1.00475 0.94627 0.97659 1.21219 0.98270 1.00305 0.94603 1.19995 0.97919 0.94493 0.96758 1.20591 0.97106 0.99382 0.94670 1.21468 0.95998 0.99535 0.96629 1.21284 0.94896 0.99297 0.98226 1.21706 0.99319 1.01225 0.94289 1.21783 0.80566 0.78735 0.91191 1.90623 1.58129 1.63824 1.36484 1.46268 1.21692 1.52313 1.15783 1.18541 0.93719 0.90229 0.83497 1.21674 1.04650 1.33822 0.99279 0.89749 1.26097 1.02730 0.96552 0.94333 1.70149 1.40950 1.41788 1.04162 0.85082 0.77224 0.77601 0.79122 1.17587 1.20423 1.20435 1.21251 1.00462 0.94478 0.98247 1.21368 0.98220 1.00742 0.94224 0.93123 0.91296 0.92463 0.92359 0.91465 0.92354 0.92461 0.91311 0.93109 0.85239 0.85480 0.91073 0.91072 0.90993 0.91002 0.92852 0.92863 0.86624 0.86620 0.75547 0.99655 0.99649 0.92253 0.85485 0.84660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.29 71.98 0.60 -0.76 16 2 C -0.03 -0.34 0.85 -52.93 -0.05 -0.38 16 3 C -0.14 -1.36 7.13 71.98 0.51 -0.84 16 4 C -0.14 -1.38 8.29 71.98 0.60 -0.79 16 5 C -0.08 -1.23 4.76 -19.86 -0.09 -1.32 16 6 C -0.12 -1.88 8.71 22.27 0.19 -1.69 16 7 C -0.13 -2.15 9.70 22.27 0.22 -1.94 16 8 C -0.09 -1.65 5.13 -19.87 -0.10 -1.75 16 9 C -0.08 -1.44 5.35 29.85 0.16 -1.28 16 10 C -0.10 -1.79 5.20 30.60 0.16 -1.64 16 11 C -0.10 -2.45 4.50 30.60 0.14 -2.32 16 12 C -0.13 -3.21 5.70 29.85 0.17 -3.04 16 13 C 0.49 19.70 7.83 87.66 0.69 20.39 16 14 O -0.61 -30.75 15.98 -3.01 -0.05 -30.80 16 15 N -0.71 -30.49 5.55 -466.79 -2.59 -33.08 16 16 C 0.26 14.77 5.43 85.63 0.46 15.24 16 17 C -0.56 -30.69 9.28 25.60 0.24 -30.45 16 18 H 0.08 4.19 7.60 -2.91 -0.02 4.17 16 19 C 0.00 0.13 5.46 84.65 0.46 0.59 16 20 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 21 Si 0.99 42.59 29.54 68.60 2.03 44.62 16 22 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 23 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 25 C -0.13 -2.17 9.70 22.27 0.22 -1.95 16 26 C -0.13 -2.00 8.98 22.27 0.20 -1.80 16 27 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.56 7.39 -2.39 -0.02 0.55 16 30 H 0.06 0.56 7.52 -2.39 -0.02 0.55 16 31 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.06 0.56 7.51 -2.39 -0.02 0.54 16 33 H 0.06 0.57 7.39 -2.39 -0.02 0.56 16 34 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.13 1.62 7.10 -2.91 -0.02 1.60 16 37 H 0.13 1.90 8.06 -2.91 -0.02 1.87 16 38 H 0.07 1.29 8.08 -2.39 -0.02 1.27 16 39 H 0.07 1.29 8.09 -2.39 -0.02 1.27 16 40 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 41 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.05 1.49 8.10 -2.39 -0.02 1.47 16 43 H 0.05 1.49 8.10 -2.39 -0.02 1.47 16 44 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.41 14.31 8.32 -92.71 -0.77 13.54 16 47 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 48 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 49 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 50 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 51 H 0.14 1.70 5.90 -2.91 -0.02 1.68 16 Total: -1.00 -73.02 411.03 4.55 -68.47 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.11 Total: 23.11 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 4.77 Total: -15.73 kcal Atomic # 7 Polarization: -87.37 SS G_CDS: -2.30 Total: -89.67 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.05 Total: -30.80 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -73.02 4.55 -68.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427640586.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.058 kcal (2) G-P(sol) polarization free energy of solvation -73.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds