Wall clock time and date at job start Tue Mar 31 2020 11:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47285 * 2 1 4 4 C 1.37984 * 120.07461 * 261.33833 * 3 2 1 5 5 C 1.38334 * 120.14557 * 179.74593 * 4 3 2 6 6 C 1.38383 * 120.29073 * 0.27350 * 5 4 3 7 7 C 1.37928 * 120.14805 * 0.02562 * 6 5 4 8 8 C 1.39554 * 120.07664 * 81.61306 * 3 2 1 9 9 C 1.47851 * 120.14143 * 0.02562 * 8 3 2 10 10 O 1.21553 * 120.00178 * 247.35655 * 9 8 3 11 11 N 1.34783 * 119.99577 * 67.36013 * 9 8 3 12 12 C 1.46497 * 119.99798 * 183.82531 * 11 9 8 13 13 C 1.50697 * 109.47128 * 94.51072 * 12 11 9 14 14 H 1.07995 * 120.00170 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00117 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00168 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00015 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47322 * 89.99968 * 17 15 13 19 19 H 1.48494 * 109.47283 * 210.00397 * 17 15 13 20 20 H 1.48506 * 109.47064 * 330.00150 * 17 15 13 21 21 C 1.46497 * 120.00092 * 3.82921 * 11 9 8 22 22 C 1.52999 * 109.47444 * 98.43190 * 21 11 9 23 23 C 1.52998 * 109.46995 * 176.95647 * 22 21 11 24 24 C 1.53007 * 109.47059 * 293.40502 * 23 22 21 25 25 C 1.52998 * 109.47078 * 296.95678 * 22 21 11 26 26 C 1.53003 * 109.47177 * 83.01228 * 25 22 21 27 27 H 1.09005 * 109.46985 * 299.99891 * 1 2 3 28 28 H 1.08994 * 109.47364 * 59.99678 * 1 2 3 29 29 H 1.08996 * 109.47139 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46604 * 239.99726 * 2 1 3 31 31 H 1.08996 * 109.46950 * 120.00645 * 2 1 3 32 32 H 1.08003 * 119.92387 * 0.02562 * 4 3 2 33 33 H 1.08001 * 119.85332 * 180.25193 * 5 4 3 34 34 H 1.08000 * 119.92210 * 179.97438 * 6 5 4 35 35 H 1.08001 * 120.07726 * 179.97438 * 7 6 5 36 36 H 1.09003 * 109.47434 * 214.51213 * 12 11 9 37 37 H 1.09002 * 109.47320 * 334.50930 * 12 11 9 38 38 H 0.97001 * 119.99990 * 179.97438 * 16 15 13 39 39 H 1.09007 * 109.46947 * 218.43449 * 21 11 9 40 40 H 1.09004 * 109.46969 * 338.42959 * 21 11 9 41 41 H 1.08994 * 109.46994 * 56.95407 * 22 21 11 42 42 H 1.08992 * 109.47457 * 53.40737 * 23 22 21 43 43 H 1.09002 * 109.46877 * 173.40794 * 23 22 21 44 44 H 1.08994 * 109.46996 * 185.86428 * 24 23 22 45 45 H 1.08990 * 109.47318 * 305.87080 * 24 23 22 46 46 H 1.09004 * 109.46448 * 65.87093 * 24 23 22 47 47 H 1.09004 * 109.47129 * 203.01480 * 25 22 21 48 48 H 1.09002 * 109.46756 * 323.01133 * 25 22 21 49 49 H 1.08991 * 109.47092 * 303.64046 * 26 25 22 50 50 H 1.09000 * 109.46382 * 63.64103 * 26 25 22 51 51 H 1.08998 * 109.46868 * 183.63530 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4324 2.0127 -1.1805 5 6 2.8889 3.3186 -1.1830 6 6 2.9529 4.0379 -0.0025 7 6 2.5618 3.4560 1.1853 8 6 2.0994 2.1389 1.1947 9 6 1.6787 1.5087 2.4643 10 8 0.6889 1.9111 3.0439 11 7 2.3928 0.4880 2.9790 12 6 1.9301 -0.1914 4.1917 13 6 1.1246 -1.4066 3.8104 14 1 0.9722 -1.6484 2.7690 15 6 0.5813 -2.2091 4.7911 16 7 -0.1221 -3.2693 4.4584 17 14 0.8443 -1.7904 6.5925 18 1 -0.2512 -0.9033 7.0596 19 1 0.8464 -3.0393 7.3958 20 1 2.1468 -1.0957 6.7542 21 6 3.6316 0.0580 2.3259 22 6 4.8300 0.6805 3.0452 23 6 6.1260 0.1716 2.4109 24 6 6.2708 -1.3277 2.6795 25 6 4.7649 2.2039 2.9201 26 6 3.8334 2.7647 3.9966 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.3848 1.4568 -2.1052 33 1 3.1970 3.7786 -2.1102 34 1 3.3106 5.0569 -0.0112 35 1 2.6126 4.0183 2.1060 36 1 2.7901 -0.4977 4.7872 37 1 1.3084 0.4885 4.7743 38 1 -0.5040 -3.8341 5.1484 39 1 3.7065 -1.0286 2.3685 40 1 3.6246 0.3812 1.2849 41 1 4.8068 0.4011 4.0984 42 1 6.0976 0.3470 1.3356 43 1 6.9746 0.7018 2.8432 44 1 7.2412 -1.6693 2.3192 45 1 6.1947 -1.5140 3.7506 46 1 5.4796 -1.8680 2.1596 47 1 5.7631 2.6221 3.0496 48 1 4.3839 2.4716 1.9346 49 1 2.8525 2.2980 3.9073 50 1 4.2482 2.5528 4.9821 51 1 3.7362 3.8426 3.8674 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000434115382.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:44 Heat of formation + Delta-G solvation = -23.236087 kcal Electronic energy + Delta-G solvation = -29367.546052 eV Core-core repulsion = 25845.451834 eV Total energy + Delta-G solvation = -3522.094218 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.60333 -38.23261 -36.93466 -34.43075 -33.78529 -32.50735 -31.89935 -30.89148 -29.34480 -28.44623 -27.23505 -24.67083 -23.91018 -23.46428 -21.90377 -21.80022 -20.81469 -20.11594 -18.61007 -17.12097 -17.01188 -15.92303 -15.83233 -15.65149 -14.74264 -14.62963 -14.15095 -14.04359 -13.83259 -13.50727 -13.32671 -13.21774 -13.07769 -12.96324 -12.79721 -12.47524 -12.34489 -12.11709 -11.97178 -11.68704 -11.56410 -11.43972 -11.35450 -11.32075 -10.94694 -10.78493 -10.66131 -10.57126 -10.50696 -10.41185 -10.29268 -10.20717 -10.01353 -9.52504 -9.15769 -8.70384 -8.60252 -8.53388 -7.64289 -6.09940 -4.08476 1.25689 1.44458 3.26552 3.28629 3.34589 3.37324 3.70488 3.91491 4.39021 4.82878 4.88358 4.90675 4.95361 5.01000 5.06555 5.22800 5.25585 5.35692 5.41861 5.51945 5.58158 5.60943 5.63922 5.66390 5.73780 5.74695 5.79377 5.94898 5.98901 6.02859 6.09525 6.11865 6.17767 6.23589 6.24371 6.28946 6.35041 6.39235 6.49558 6.50867 6.52275 6.57043 6.66728 6.67483 6.74973 6.78222 6.94969 7.01127 7.33120 7.60308 8.20357 8.45150 8.87515 8.95163 9.50917 11.02989 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011675 B = 0.005931 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.796282 B = 4719.507622 C = 5518.553269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 C -0.048 4.048 4 C -0.124 4.124 5 C -0.109 4.109 6 C -0.133 4.133 7 C -0.080 4.080 8 C -0.107 4.107 9 C 0.563 3.437 10 O -0.538 6.538 11 N -0.581 5.581 12 C 0.214 3.786 13 C -0.528 4.528 14 H 0.078 0.922 15 C 0.075 3.925 16 N -0.896 5.896 17 Si 0.871 3.129 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.266 1.266 21 C 0.109 3.891 22 C -0.108 4.108 23 C -0.112 4.112 24 C -0.156 4.156 25 C -0.123 4.123 26 C -0.170 4.170 27 H 0.063 0.937 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.029 0.971 37 H 0.039 0.961 38 H 0.264 0.736 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.049 0.951 45 H 0.055 0.945 46 H 0.060 0.940 47 H 0.054 0.946 48 H 0.069 0.931 49 H 0.077 0.923 50 H 0.049 0.951 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.261 10.280 -9.735 18.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.141 4.141 3 C -0.048 4.048 4 C -0.142 4.142 5 C -0.127 4.127 6 C -0.151 4.151 7 C -0.098 4.098 8 C -0.110 4.110 9 C 0.351 3.649 10 O -0.417 6.417 11 N -0.311 5.311 12 C 0.094 3.906 13 C -0.567 4.567 14 H 0.096 0.904 15 C -0.127 4.127 16 N -0.534 5.534 17 Si 0.698 3.302 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.190 1.190 21 C -0.015 4.015 22 C -0.128 4.128 23 C -0.150 4.150 24 C -0.213 4.213 25 C -0.160 4.160 26 C -0.228 4.228 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.113 0.887 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.047 0.953 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.073 0.927 48 H 0.087 0.913 49 H 0.096 0.904 50 H 0.069 0.931 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.615 10.298 -9.316 18.104 hybrid contribution 0.083 0.094 0.983 0.991 sum 11.699 10.392 -8.332 17.728 Atomic orbital electron populations 1.21668 0.94009 1.02397 1.01873 1.20894 0.97298 0.91856 1.04067 1.20048 0.96403 0.96365 0.92011 1.20960 1.00547 0.95400 0.97305 1.21178 0.99164 0.94439 0.97935 1.20996 1.01773 0.99927 0.92414 1.21150 0.96740 0.93363 0.98578 1.20007 1.01789 0.95114 0.94129 1.18032 0.83062 0.79857 0.83984 1.90780 1.26302 1.63425 1.61150 1.47891 1.22574 1.32089 1.28502 1.19680 0.95282 0.93007 0.82638 1.21310 1.32273 1.07429 0.95657 0.90424 1.24808 0.94489 0.94717 0.98705 1.69884 1.34672 1.15370 1.33482 0.86923 0.79436 0.78079 0.85739 1.19943 1.21128 1.19029 1.21783 0.83034 1.00443 0.96227 1.21681 0.94657 0.95318 1.01122 1.21504 0.96735 0.96212 1.00588 1.21842 1.01293 0.96059 1.02121 1.21739 0.99240 0.94948 1.00064 1.22222 1.01963 0.99987 0.98591 0.91819 0.93430 0.91882 0.91147 0.88719 0.85854 0.86156 0.85968 0.85637 0.95266 0.94322 0.92599 0.89773 0.90507 0.90616 0.92141 0.92217 0.93210 0.92548 0.92086 0.92695 0.91289 0.90431 0.93145 0.93617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.86 37.16 0.37 -2.06 16 2 C -0.10 -1.64 5.12 -27.88 -0.14 -1.78 16 3 C -0.05 -0.71 3.92 -104.23 -0.41 -1.12 16 4 C -0.12 -1.51 9.66 -39.64 -0.38 -1.89 16 5 C -0.11 -1.18 10.04 -39.49 -0.40 -1.58 16 6 C -0.13 -1.53 10.03 -39.64 -0.40 -1.93 16 7 C -0.08 -1.14 6.91 -39.19 -0.27 -1.41 16 8 C -0.11 -1.78 3.44 -104.97 -0.36 -2.14 16 9 C 0.56 11.47 2.68 -12.32 -0.03 11.44 16 10 O -0.54 -13.27 16.41 5.32 0.09 -13.18 16 11 N -0.58 -11.58 0.84 -176.17 -0.15 -11.73 16 12 C 0.21 5.10 4.03 -5.20 -0.02 5.08 16 13 C -0.53 -14.54 9.94 -34.44 -0.34 -14.89 16 14 H 0.08 2.30 7.98 -52.49 -0.42 1.88 16 15 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 16 N -0.90 -26.93 13.96 55.43 0.77 -26.16 16 17 Si 0.87 21.37 27.47 -169.99 -4.67 16.70 16 18 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 21 C 0.11 1.77 3.20 -4.04 -0.01 1.75 16 22 C -0.11 -1.51 2.12 -90.62 -0.19 -1.70 16 23 C -0.11 -1.28 5.33 -26.73 -0.14 -1.43 16 24 C -0.16 -1.80 9.56 37.16 0.36 -1.45 16 25 C -0.12 -1.63 4.96 -26.73 -0.13 -1.76 16 26 C -0.17 -2.56 8.05 37.16 0.30 -2.26 16 27 H 0.06 1.30 7.57 -51.93 -0.39 0.90 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 0.92 8.02 -51.93 -0.42 0.51 16 31 H 0.09 1.72 4.89 -51.93 -0.25 1.47 16 32 H 0.12 1.23 8.04 -52.48 -0.42 0.81 16 33 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.13 1.76 6.42 -52.49 -0.34 1.42 16 36 H 0.03 0.67 6.84 -51.93 -0.35 0.32 16 37 H 0.04 1.00 6.67 -51.93 -0.35 0.65 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.08 1.44 6.60 -51.92 -0.34 1.09 16 40 H 0.08 1.15 4.61 -51.93 -0.24 0.92 16 41 H 0.08 1.17 7.60 -51.93 -0.39 0.77 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.62 7.98 -51.93 -0.41 0.21 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.75 6.83 -51.93 -0.35 0.39 16 47 H 0.05 0.64 7.83 -51.93 -0.41 0.24 16 48 H 0.07 0.92 4.35 -51.93 -0.23 0.70 16 49 H 0.08 1.41 3.37 -51.93 -0.18 1.24 16 50 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.04 0.61 7.39 -51.93 -0.38 0.23 16 LS Contribution 380.02 15.07 5.73 5.73 Total: -1.00 -31.54 380.02 -8.97 -40.51 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -8.43 Total: 5.21 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -2.31 Total: -17.09 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.62 Total: -37.88 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.09 Total: -13.18 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.54 -8.97 -40.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434115382.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.277 kcal (2) G-P(sol) polarization free energy of solvation -31.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds