Wall clock time and date at job start Tue Mar 31 2020 11:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47285 * 2 1 4 4 C 1.37984 * 120.07461 * 261.33833 * 3 2 1 5 5 C 1.38334 * 120.14557 * 179.74593 * 4 3 2 6 6 C 1.38383 * 120.29073 * 0.27350 * 5 4 3 7 7 C 1.37928 * 120.14805 * 0.02562 * 6 5 4 8 8 C 1.39554 * 120.07664 * 81.61306 * 3 2 1 9 9 C 1.47851 * 120.14143 * 0.02562 * 8 3 2 10 10 O 1.21553 * 120.00178 * 247.35655 * 9 8 3 11 11 N 1.34783 * 119.99577 * 67.36013 * 9 8 3 12 12 C 1.46497 * 119.99798 * 183.82531 * 11 9 8 13 13 C 1.50697 * 109.47128 * 94.51072 * 12 11 9 14 14 H 1.07995 * 120.00170 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00117 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00168 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00015 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47322 * 89.99968 * 17 15 13 19 19 H 1.48494 * 109.47283 * 210.00397 * 17 15 13 20 20 H 1.48506 * 109.47064 * 330.00150 * 17 15 13 21 21 C 1.46497 * 120.00092 * 3.82921 * 11 9 8 22 22 C 1.52999 * 109.47444 * 98.43190 * 21 11 9 23 23 C 1.52998 * 109.46995 * 176.95647 * 22 21 11 24 24 C 1.53007 * 109.47059 * 293.40502 * 23 22 21 25 25 C 1.52998 * 109.47078 * 296.95678 * 22 21 11 26 26 C 1.53003 * 109.47177 * 83.01228 * 25 22 21 27 27 H 1.09005 * 109.46985 * 299.99891 * 1 2 3 28 28 H 1.08994 * 109.47364 * 59.99678 * 1 2 3 29 29 H 1.08996 * 109.47139 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46604 * 239.99726 * 2 1 3 31 31 H 1.08996 * 109.46950 * 120.00645 * 2 1 3 32 32 H 1.08003 * 119.92387 * 0.02562 * 4 3 2 33 33 H 1.08001 * 119.85332 * 180.25193 * 5 4 3 34 34 H 1.08000 * 119.92210 * 179.97438 * 6 5 4 35 35 H 1.08001 * 120.07726 * 179.97438 * 7 6 5 36 36 H 1.09003 * 109.47434 * 214.51213 * 12 11 9 37 37 H 1.09002 * 109.47320 * 334.50930 * 12 11 9 38 38 H 0.97001 * 119.99990 * 179.97438 * 16 15 13 39 39 H 1.09007 * 109.46947 * 218.43449 * 21 11 9 40 40 H 1.09004 * 109.46969 * 338.42959 * 21 11 9 41 41 H 1.08994 * 109.46994 * 56.95407 * 22 21 11 42 42 H 1.08992 * 109.47457 * 53.40737 * 23 22 21 43 43 H 1.09002 * 109.46877 * 173.40794 * 23 22 21 44 44 H 1.08994 * 109.46996 * 185.86428 * 24 23 22 45 45 H 1.08990 * 109.47318 * 305.87080 * 24 23 22 46 46 H 1.09004 * 109.46448 * 65.87093 * 24 23 22 47 47 H 1.09004 * 109.47129 * 203.01480 * 25 22 21 48 48 H 1.09002 * 109.46756 * 323.01133 * 25 22 21 49 49 H 1.08991 * 109.47092 * 303.64046 * 26 25 22 50 50 H 1.09000 * 109.46382 * 63.64103 * 26 25 22 51 51 H 1.08998 * 109.46868 * 183.63530 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4324 2.0127 -1.1805 5 6 2.8889 3.3186 -1.1830 6 6 2.9529 4.0379 -0.0025 7 6 2.5618 3.4560 1.1853 8 6 2.0994 2.1389 1.1947 9 6 1.6787 1.5087 2.4643 10 8 0.6889 1.9111 3.0439 11 7 2.3928 0.4880 2.9790 12 6 1.9301 -0.1914 4.1917 13 6 1.1246 -1.4066 3.8104 14 1 0.9722 -1.6484 2.7690 15 6 0.5813 -2.2091 4.7911 16 7 -0.1221 -3.2693 4.4584 17 14 0.8443 -1.7904 6.5925 18 1 -0.2512 -0.9033 7.0596 19 1 0.8464 -3.0393 7.3958 20 1 2.1468 -1.0957 6.7542 21 6 3.6316 0.0580 2.3259 22 6 4.8300 0.6805 3.0452 23 6 6.1260 0.1716 2.4109 24 6 6.2708 -1.3277 2.6795 25 6 4.7649 2.2039 2.9201 26 6 3.8334 2.7647 3.9966 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.3848 1.4568 -2.1052 33 1 3.1970 3.7786 -2.1102 34 1 3.3106 5.0569 -0.0112 35 1 2.6126 4.0183 2.1060 36 1 2.7901 -0.4977 4.7872 37 1 1.3084 0.4885 4.7743 38 1 -0.5040 -3.8341 5.1484 39 1 3.7065 -1.0286 2.3685 40 1 3.6246 0.3812 1.2849 41 1 4.8068 0.4011 4.0984 42 1 6.0976 0.3470 1.3356 43 1 6.9746 0.7018 2.8432 44 1 7.2412 -1.6693 2.3192 45 1 6.1947 -1.5140 3.7506 46 1 5.4796 -1.8680 2.1596 47 1 5.7631 2.6221 3.0496 48 1 4.3839 2.4716 1.9346 49 1 2.8525 2.2980 3.9073 50 1 4.2482 2.5528 4.9821 51 1 3.7362 3.8426 3.8674 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000434115382.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:43 Heat of formation + Delta-G solvation = -39.461037 kcal Electronic energy + Delta-G solvation = -29368.249619 eV Core-core repulsion = 25845.451834 eV Total energy + Delta-G solvation = -3522.797785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.94937 -39.43745 -38.29863 -35.95813 -35.15500 -34.40678 -33.07995 -32.02584 -30.68083 -30.00531 -28.64140 -25.90344 -25.42790 -24.76439 -23.36944 -22.84126 -22.05178 -21.28048 -20.00196 -19.11018 -18.46561 -17.40245 -17.18512 -16.91644 -16.25498 -15.87050 -15.63361 -15.14380 -15.12095 -14.74609 -14.67531 -14.50790 -14.45232 -14.33978 -14.11158 -14.05580 -13.64970 -13.48054 -13.22464 -13.11119 -13.08382 -12.84537 -12.54261 -12.51579 -12.43118 -12.38840 -12.17735 -11.86403 -11.79609 -11.75431 -11.68063 -11.43396 -11.41583 -11.25987 -10.83754 -10.75013 -9.74611 -9.63050 -9.27808 -8.34438 -6.37760 0.19773 0.45085 1.28047 1.31680 1.39455 1.76939 2.26170 2.28406 2.81146 2.99645 3.58068 3.78587 3.80483 3.87057 3.95471 4.12619 4.17887 4.30634 4.35116 4.39717 4.41789 4.49492 4.53859 4.56466 4.59348 4.60998 4.63001 4.74224 4.79369 4.84428 4.90742 4.95653 4.98858 5.07068 5.10792 5.11440 5.15371 5.17400 5.23781 5.26317 5.28278 5.43836 5.45138 5.49307 5.49870 5.56917 5.57340 5.63598 5.66328 6.04915 6.23895 6.63821 6.65491 7.20181 7.35654 8.81693 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011675 B = 0.005931 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.796282 B = 4719.507622 C = 5518.553269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.102 4.102 3 C -0.063 4.063 4 C -0.117 4.117 5 C -0.093 4.093 6 C -0.122 4.122 7 C -0.089 4.089 8 C -0.131 4.131 9 C 0.566 3.434 10 O -0.598 6.598 11 N -0.580 5.580 12 C 0.228 3.772 13 C -0.529 4.529 14 H 0.041 0.959 15 C 0.019 3.981 16 N -0.939 5.939 17 Si 0.934 3.066 18 H -0.278 1.278 19 H -0.273 1.273 20 H -0.244 1.244 21 C 0.110 3.890 22 C -0.104 4.104 23 C -0.104 4.104 24 C -0.157 4.157 25 C -0.115 4.115 26 C -0.170 4.170 27 H 0.017 0.983 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.153 0.847 33 H 0.163 0.837 34 H 0.157 0.843 35 H 0.120 0.880 36 H 0.040 0.960 37 H 0.015 0.985 38 H 0.267 0.733 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.044 0.956 46 H 0.045 0.955 47 H 0.081 0.919 48 H 0.072 0.928 49 H 0.041 0.959 50 H 0.048 0.952 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.564 12.666 -11.988 23.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.139 4.139 3 C -0.063 4.063 4 C -0.135 4.135 5 C -0.111 4.111 6 C -0.139 4.139 7 C -0.108 4.108 8 C -0.134 4.134 9 C 0.356 3.644 10 O -0.481 6.481 11 N -0.309 5.309 12 C 0.106 3.894 13 C -0.568 4.568 14 H 0.059 0.941 15 C -0.179 4.179 16 N -0.579 5.579 17 Si 0.758 3.242 18 H -0.204 1.204 19 H -0.198 1.198 20 H -0.168 1.168 21 C -0.012 4.012 22 C -0.124 4.124 23 C -0.142 4.142 24 C -0.214 4.214 25 C -0.152 4.152 26 C -0.228 4.228 27 H 0.036 0.964 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.121 0.879 31 H 0.079 0.921 32 H 0.170 0.830 33 H 0.180 0.820 34 H 0.174 0.826 35 H 0.138 0.862 36 H 0.058 0.942 37 H 0.033 0.967 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.100 0.900 48 H 0.091 0.909 49 H 0.060 0.940 50 H 0.067 0.933 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.971 12.680 -11.594 22.789 hybrid contribution -0.984 -0.621 1.547 1.936 sum 13.986 12.059 -10.046 21.023 Atomic orbital electron populations 1.21600 0.95639 1.01261 1.00888 1.20834 0.95890 0.93261 1.03962 1.19988 0.97921 0.95659 0.92744 1.21279 0.99083 0.96244 0.96854 1.21666 0.96699 0.93498 0.99213 1.21385 0.99972 1.01286 0.91292 1.21213 0.97375 0.92252 0.99931 1.19750 1.04848 0.96449 0.92400 1.18677 0.81791 0.79134 0.84772 1.90719 1.28856 1.65266 1.63231 1.47842 1.23771 1.31813 1.27442 1.19250 0.94635 0.91113 0.84444 1.21509 1.32550 1.08683 0.94057 0.94113 1.25664 0.94211 0.94522 1.03514 1.70020 1.36102 1.16678 1.35115 0.85915 0.80088 0.78261 0.79971 1.20426 1.19820 1.16774 1.21945 0.82383 0.99624 0.97240 1.21650 0.94837 0.96060 0.99853 1.21465 0.95528 0.95864 1.01295 1.21848 1.01928 0.96388 1.01268 1.21697 1.00051 0.93988 0.99449 1.22192 1.00489 1.00719 0.99371 0.96399 0.90560 0.93115 0.87941 0.92069 0.82977 0.81971 0.82572 0.86235 0.94208 0.96654 0.92358 0.91505 0.88897 0.92533 0.90728 0.90209 0.91114 0.93702 0.93565 0.90045 0.90920 0.93973 0.93295 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.92 9.86 71.98 0.71 -4.21 16 2 C -0.10 -3.28 5.12 29.85 0.15 -3.12 16 3 C -0.06 -1.79 3.92 -19.61 -0.08 -1.87 16 4 C -0.12 -2.34 9.66 22.23 0.21 -2.12 16 5 C -0.09 -1.48 10.04 22.33 0.22 -1.26 16 6 C -0.12 -2.24 10.03 22.23 0.22 -2.02 16 7 C -0.09 -2.38 6.91 22.52 0.16 -2.23 16 8 C -0.13 -4.36 3.44 -20.09 -0.07 -4.43 16 9 C 0.57 24.43 2.68 86.79 0.23 24.67 16 10 O -0.60 -31.92 16.41 -3.88 -0.06 -31.99 16 11 N -0.58 -24.53 0.84 -829.55 -0.70 -25.23 16 12 C 0.23 11.50 4.03 85.63 0.35 11.85 16 13 C -0.53 -31.19 9.94 25.60 0.25 -30.94 16 14 H 0.04 2.63 7.98 -2.91 -0.02 2.61 16 15 C 0.02 1.16 5.47 84.66 0.46 1.62 16 16 N -0.94 -59.25 13.96 21.45 0.30 -58.95 16 17 Si 0.93 45.58 27.47 68.60 1.88 47.46 16 18 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 19 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.24 -10.96 6.54 99.48 0.65 -10.31 16 21 C 0.11 3.68 3.20 86.38 0.28 3.96 16 22 C -0.10 -2.83 2.12 -10.80 -0.02 -2.85 16 23 C -0.10 -2.10 5.33 30.60 0.16 -1.94 16 24 C -0.16 -3.43 9.56 71.98 0.69 -2.74 16 25 C -0.11 -2.82 4.96 30.59 0.15 -2.67 16 26 C -0.17 -5.07 8.05 71.98 0.58 -4.49 16 27 H 0.02 0.76 7.57 -2.38 -0.02 0.75 16 28 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.10 2.54 8.02 -2.38 -0.02 2.52 16 31 H 0.06 2.37 4.89 -2.39 -0.01 2.36 16 32 H 0.15 2.18 8.04 -2.91 -0.02 2.16 16 33 H 0.16 1.36 8.06 -2.91 -0.02 1.33 16 34 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 35 H 0.12 3.27 6.42 -2.91 -0.02 3.25 16 36 H 0.04 1.91 6.84 -2.39 -0.02 1.89 16 37 H 0.02 0.85 6.67 -2.39 -0.02 0.83 16 38 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 39 H 0.07 2.42 6.60 -2.38 -0.02 2.41 16 40 H 0.09 2.79 4.61 -2.39 -0.01 2.78 16 41 H 0.06 1.75 7.60 -2.39 -0.02 1.73 16 42 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.08 1.35 7.98 -2.39 -0.02 1.34 16 44 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.04 1.06 8.14 -2.39 -0.02 1.05 16 46 H 0.05 1.13 6.83 -2.38 -0.02 1.11 16 47 H 0.08 1.60 7.83 -2.38 -0.02 1.58 16 48 H 0.07 1.77 4.35 -2.39 -0.01 1.76 16 49 H 0.04 1.59 3.37 -2.39 -0.01 1.58 16 50 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 51 H 0.06 1.55 7.39 -2.39 -0.02 1.53 16 Total: -1.00 -76.42 380.02 6.94 -69.49 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.85 Total: 24.02 kcal Atomic # 6 Polarization: -29.47 SS G_CDS: 4.67 Total: -24.80 kcal Atomic # 7 Polarization: -83.78 SS G_CDS: -0.40 Total: -84.18 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: -0.06 Total: -31.99 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.88 Total: 47.46 kcal Total: -76.42 6.94 -69.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434115382.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.026 kcal (2) G-P(sol) polarization free energy of solvation -76.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds