Wall clock time and date at job start Tue Mar 31 2020 12:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 120.00165 * 2 1 4 4 C 1.50702 * 109.47058 * 269.99943 * 3 2 1 5 5 H 1.07997 * 119.99770 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99852 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99720 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 120.00370 * 359.97438 * 6 4 3 9 9 H 1.48496 * 109.47081 * 90.00221 * 8 6 4 10 10 H 1.48499 * 109.47254 * 210.00639 * 8 6 4 11 11 H 1.48508 * 109.46838 * 330.00489 * 8 6 4 12 12 C 1.34771 * 120.00045 * 179.97438 * 2 1 3 13 13 O 1.21290 * 120.00266 * 174.75847 * 12 2 1 14 14 C 1.50699 * 120.00222 * 354.75949 * 12 2 1 15 15 C 1.53005 * 109.46969 * 306.25233 * 14 12 2 16 16 C 1.53002 * 109.47232 * 186.25476 * 14 12 2 17 17 C 1.50693 * 109.47186 * 66.25230 * 14 12 2 18 18 C 1.38237 * 119.99983 * 7.77988 * 17 14 12 19 19 C 1.38242 * 119.99904 * 180.27536 * 18 17 14 20 20 C 1.38229 * 119.99841 * 359.46930 * 19 18 17 21 21 C 1.50702 * 120.00142 * 180.27552 * 20 19 18 22 22 C 1.52998 * 109.47068 * 59.99578 * 21 20 19 23 23 C 1.52994 * 109.47393 * 179.97438 * 21 20 19 24 24 C 1.53000 * 109.46934 * 299.99997 * 21 20 19 25 25 C 1.38238 * 120.00430 * 0.25522 * 20 19 18 26 26 C 1.38236 * 120.00123 * 187.49999 * 17 14 12 27 27 H 1.08994 * 109.47691 * 272.98319 * 1 2 3 28 28 H 1.08998 * 109.46856 * 32.98447 * 1 2 3 29 29 H 1.09003 * 109.47141 * 152.98134 * 1 2 3 30 30 H 1.09009 * 109.47025 * 29.99217 * 3 2 1 31 31 H 1.09000 * 109.47823 * 149.99617 * 3 2 1 32 32 H 0.96998 * 119.99605 * 179.97438 * 7 6 4 33 33 H 1.08996 * 109.47016 * 188.75435 * 15 14 12 34 34 H 1.08995 * 109.47452 * 308.76266 * 15 14 12 35 35 H 1.09000 * 109.46509 * 68.76011 * 15 14 12 36 36 H 1.08995 * 109.47576 * 299.99744 * 16 14 12 37 37 H 1.09007 * 109.46866 * 60.00195 * 16 14 12 38 38 H 1.09006 * 109.46969 * 179.97438 * 16 14 12 39 39 H 1.07996 * 120.00084 * 0.02562 * 18 17 14 40 40 H 1.07990 * 119.99911 * 179.73759 * 19 18 17 41 41 H 1.09003 * 109.47093 * 60.00432 * 22 21 20 42 42 H 1.09000 * 109.47090 * 179.97438 * 22 21 20 43 43 H 1.09001 * 109.47311 * 300.00517 * 22 21 20 44 44 H 1.09007 * 109.47481 * 60.00097 * 23 21 20 45 45 H 1.09000 * 109.47488 * 180.02562 * 23 21 20 46 46 H 1.08996 * 109.47262 * 300.00088 * 23 21 20 47 47 H 1.09001 * 109.47042 * 59.99730 * 24 21 20 48 48 H 1.09006 * 109.47128 * 179.97438 * 24 21 20 49 49 H 1.09008 * 109.47084 * 299.99932 * 24 21 20 50 50 H 1.07997 * 120.00360 * 180.02562 * 25 20 19 51 51 H 1.08005 * 119.99886 * 0.02562 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1270 2.8774 -1.6728 7 7 3.3457 3.2572 -2.9127 8 14 3.7340 3.9287 -0.2530 9 1 5.1070 3.5068 0.1236 10 1 3.7498 5.3553 -0.6649 11 1 2.8274 3.7595 0.9110 12 6 2.1388 -1.1671 0.0005 13 8 3.3479 -1.1694 -0.0954 14 6 1.3901 -2.4695 0.1203 15 6 0.4915 -2.4292 1.3580 16 6 2.3884 -3.6214 0.2522 17 6 0.5432 -2.6769 -1.1088 18 6 0.6672 -1.8198 -2.1863 19 6 -0.1138 -2.0067 -3.3115 20 6 -1.0108 -3.0572 -3.3635 21 6 -1.8578 -3.2646 -4.5926 22 6 -0.9515 -3.4922 -5.8041 23 6 -2.7568 -4.4863 -4.3923 24 6 -2.7246 -2.0263 -4.8296 25 6 -1.1308 -3.9177 -2.2883 26 6 -0.3535 -3.7277 -1.1610 27 1 -0.3634 0.0535 1.0262 28 1 -0.3633 0.8620 -0.5595 29 1 -0.3633 -0.9155 -0.4669 30 1 1.6083 2.0285 0.5138 31 1 3.1499 1.1385 0.5139 32 1 3.8226 4.0831 -3.0900 33 1 0.0702 -3.4190 1.5335 34 1 1.0795 -2.1258 2.2242 35 1 -0.3153 -1.7140 1.1980 36 1 3.0286 -3.6503 -0.6295 37 1 3.0009 -3.4714 1.1413 38 1 1.8468 -4.5634 0.3393 39 1 1.3712 -1.0019 -2.1474 40 1 -0.0200 -1.3347 -4.1516 41 1 -0.3339 -4.3744 -5.6353 42 1 -1.5641 -3.6427 -6.6930 43 1 -0.3107 -2.6221 -5.9470 44 1 -3.4026 -4.3246 -3.5291 45 1 -3.3691 -4.6366 -5.2814 46 1 -2.1390 -5.3683 -4.2237 47 1 -2.0838 -1.1562 -4.9725 48 1 -3.3369 -2.1762 -5.7189 49 1 -3.3703 -1.8642 -3.9665 50 1 -1.8313 -4.7386 -2.3291 51 1 -0.4474 -4.3997 -0.3208 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439116686.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:11 Heat of formation + Delta-G solvation = -14.765627 kcal Electronic energy + Delta-G solvation = -28293.926459 eV Core-core repulsion = 24772.199548 eV Total energy + Delta-G solvation = -3521.726911 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.73268 -39.08717 -36.66929 -35.00040 -34.23621 -32.43516 -30.96515 -28.99630 -28.64128 -27.47779 -27.28969 -26.91343 -26.01563 -24.00645 -22.80126 -21.86063 -20.68983 -19.16230 -18.24524 -17.13770 -16.80095 -15.78812 -15.58322 -15.07607 -14.82758 -14.47761 -14.34464 -14.22622 -13.67280 -13.59506 -13.39740 -13.37327 -12.97012 -12.86104 -12.55724 -12.38107 -12.24717 -12.12023 -12.00909 -11.96642 -11.79705 -11.70662 -11.62070 -11.41559 -11.25638 -11.04153 -11.02594 -10.90574 -10.68087 -10.50602 -10.46218 -10.33416 -10.12635 -9.52044 -8.87951 -8.66228 -8.57534 -8.26859 -7.64800 -6.07565 -4.05788 1.48566 1.62940 3.29774 3.33635 3.35687 3.37665 3.86259 3.90808 4.40570 4.54823 4.69281 4.82071 4.85283 4.92141 5.16695 5.21782 5.22621 5.24695 5.32374 5.36664 5.45737 5.55375 5.62236 5.67618 5.70238 5.74373 5.75457 5.79601 5.82796 5.86764 5.89766 5.92778 5.98064 5.99964 6.03402 6.12730 6.22463 6.24263 6.26010 6.30408 6.31925 6.46597 6.67524 6.71970 6.84078 6.84785 6.95195 7.20541 7.37471 7.62526 8.27827 8.47780 8.93672 9.00975 9.53096 11.05727 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013194 B = 0.004431 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.608994 B = 6318.113540 C = 7677.869983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.593 5.593 3 C 0.215 3.785 4 C -0.525 4.525 5 H 0.075 0.925 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.875 3.125 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.518 3.482 13 O -0.535 6.535 14 C -0.044 4.044 15 C -0.149 4.149 16 C -0.119 4.119 17 C -0.073 4.073 18 C -0.104 4.104 19 C -0.108 4.108 20 C -0.075 4.075 21 C -0.028 4.028 22 C -0.140 4.140 23 C -0.142 4.142 24 C -0.139 4.139 25 C -0.126 4.126 26 C -0.112 4.112 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.029 0.971 31 H 0.034 0.966 32 H 0.264 0.736 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.139 0.861 40 H 0.121 0.879 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.057 0.943 47 H 0.060 0.940 48 H 0.055 0.945 49 H 0.056 0.944 50 H 0.122 0.878 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.042 -15.587 1.676 21.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.325 5.325 3 C 0.094 3.906 4 C -0.564 4.564 5 H 0.093 0.907 6 C -0.129 4.129 7 N -0.536 5.536 8 Si 0.702 3.298 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.304 3.696 13 O -0.412 6.412 14 C -0.047 4.047 15 C -0.206 4.206 16 C -0.177 4.177 17 C -0.074 4.074 18 C -0.122 4.122 19 C -0.126 4.126 20 C -0.075 4.075 21 C -0.028 4.028 22 C -0.197 4.197 23 C -0.199 4.199 24 C -0.197 4.197 25 C -0.144 4.144 26 C -0.130 4.130 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.156 0.844 40 H 0.139 0.861 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.074 0.926 49 H 0.075 0.925 50 H 0.140 0.860 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.314 -15.404 1.520 20.416 hybrid contribution 0.376 0.810 0.573 1.061 sum -12.938 -14.594 2.093 19.615 Atomic orbital electron populations 1.22145 0.81230 1.03677 1.00426 1.47774 1.06132 1.06858 1.71693 1.19670 0.92282 0.80204 0.98411 1.21301 1.36824 1.07044 0.91187 0.90718 1.24844 0.95265 0.97348 0.95493 1.69896 1.41550 1.23554 1.18598 0.86867 0.80103 0.79780 0.83031 1.19965 1.21115 1.19114 1.20100 0.87752 0.84768 0.77010 1.90676 1.14180 1.86959 1.49372 1.19795 0.95572 0.95058 0.94281 1.22175 0.99727 1.02816 0.95912 1.21623 0.97833 0.95068 1.03177 1.19488 0.97057 0.96042 0.94774 1.21577 0.98931 0.99171 0.92496 1.20983 0.95906 0.97525 0.98186 1.19775 0.97086 0.95540 0.95061 1.19474 0.94434 0.95981 0.92954 1.21900 0.99196 1.02225 0.96364 1.21946 0.99137 0.97191 1.01611 1.21899 0.99420 0.96971 1.01365 1.21024 1.00294 0.99770 0.93301 1.20845 0.96464 0.97506 0.98170 0.93683 0.91036 0.90389 0.95287 0.94785 0.92621 0.91880 0.92067 0.90643 0.91710 0.91940 0.92436 0.84356 0.86070 0.92591 0.92563 0.92123 0.92342 0.92620 0.92395 0.92068 0.92592 0.92519 0.85988 0.86304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.13 7.91 59.84 0.47 1.60 16 2 N -0.59 -12.30 2.22 -182.95 -0.41 -12.70 16 3 C 0.21 5.28 4.20 -5.19 -0.02 5.26 16 4 C -0.53 -14.98 9.94 -34.44 -0.34 -15.32 16 5 H 0.07 2.31 7.39 -52.49 -0.39 1.93 16 6 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 7 N -0.90 -27.61 13.96 55.43 0.77 -26.83 16 8 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 9 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 12 C 0.52 10.70 4.87 -10.99 -0.05 10.65 16 13 O -0.54 -13.41 15.62 5.55 0.09 -13.32 16 14 C -0.04 -0.68 0.59 -156.81 -0.09 -0.77 16 15 C -0.15 -1.84 7.61 37.16 0.28 -1.56 16 16 C -0.12 -1.74 7.66 37.16 0.28 -1.45 16 17 C -0.07 -1.09 3.10 -104.63 -0.32 -1.41 16 18 C -0.10 -1.78 7.23 -39.58 -0.29 -2.06 16 19 C -0.11 -1.62 8.71 -39.58 -0.34 -1.97 16 20 C -0.07 -0.93 4.76 -104.62 -0.50 -1.43 16 21 C -0.03 -0.29 0.85 -155.66 -0.13 -0.42 16 22 C -0.14 -1.41 8.29 37.16 0.31 -1.11 16 23 C -0.14 -1.19 7.13 37.15 0.26 -0.92 16 24 C -0.14 -1.39 8.29 37.16 0.31 -1.08 16 25 C -0.13 -1.46 8.98 -39.58 -0.36 -1.81 16 26 C -0.11 -1.37 8.84 -39.58 -0.35 -1.72 16 27 H 0.04 0.62 7.11 -51.93 -0.37 0.26 16 28 H 0.07 1.22 8.09 -51.93 -0.42 0.80 16 29 H 0.08 1.18 3.40 -51.93 -0.18 1.00 16 30 H 0.03 0.68 7.13 -51.92 -0.37 0.31 16 31 H 0.03 0.89 6.93 -51.93 -0.36 0.53 16 32 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.06 0.62 7.35 -51.93 -0.38 0.24 16 34 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 35 H 0.07 0.90 4.51 -51.93 -0.23 0.67 16 36 H 0.06 1.06 8.03 -51.93 -0.42 0.64 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.66 7.89 -51.93 -0.41 0.25 16 39 H 0.14 2.95 5.33 -52.49 -0.28 2.67 16 40 H 0.12 1.82 7.10 -52.49 -0.37 1.45 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.67 7.39 -51.93 -0.38 0.29 16 44 H 0.06 0.47 7.51 -51.92 -0.39 0.08 16 45 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.47 7.51 -51.93 -0.39 0.08 16 47 H 0.06 0.67 7.39 -51.93 -0.38 0.29 16 48 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 50 H 0.12 1.14 5.90 -52.49 -0.31 0.83 16 51 H 0.12 1.19 7.27 -52.48 -0.38 0.81 16 LS Contribution 382.96 15.07 5.77 5.77 Total: -1.00 -32.85 382.96 -7.96 -40.81 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -8.54 Total: 2.78 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -0.98 Total: -13.52 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.37 Total: -39.53 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.09 Total: -13.32 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.85 -7.96 -40.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439116686.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.045 kcal (2) G-P(sol) polarization free energy of solvation -32.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds