Wall clock time and date at job start Tue Mar 31 2020 12:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47035 * 2 1 4 4 C 1.52996 * 109.47071 * 185.20353 * 3 2 1 5 5 C 1.52998 * 109.87920 * 295.09972 * 4 3 2 6 6 O 1.42897 * 109.47281 * 64.00792 * 5 4 3 7 7 C 1.42896 * 114.00162 * 179.97438 * 6 5 4 8 8 C 1.54324 * 110.02403 * 56.21978 * 4 3 2 9 9 C 1.55142 * 103.01989 * 141.76727 * 8 4 3 10 10 C 1.54906 * 101.65148 * 324.34669 * 9 8 4 11 11 N 1.47440 * 109.88935 * 174.06828 * 4 3 2 12 12 C 1.46903 * 111.00179 * 3.68862 * 11 4 3 13 13 C 1.50697 * 109.47260 * 173.23351 * 12 11 4 14 14 C 1.38639 * 119.74885 * 89.99988 * 13 12 11 15 15 C 1.37616 * 120.25053 * 179.97438 * 14 13 12 16 16 C 1.40721 * 119.74277 * 0.02562 * 15 14 13 17 17 C 1.41392 * 120.24099 * 180.02562 * 16 15 14 18 18 H 1.08005 * 120.00181 * 150.90357 * 17 16 15 19 19 C 1.39944 * 120.00008 * 330.62024 * 17 16 15 20 20 N 1.30822 * 120.00321 * 349.07786 * 19 17 16 21 21 Si 1.86804 * 120.00139 * 169.07945 * 19 17 16 22 22 H 1.48508 * 109.47032 * 90.00035 * 21 19 17 23 23 H 1.48492 * 109.47361 * 210.00082 * 21 19 17 24 24 H 1.48493 * 109.47201 * 330.00305 * 21 19 17 25 25 C 1.40709 * 119.51019 * 0.26705 * 16 15 14 26 26 C 1.37618 * 119.74920 * 359.47365 * 25 16 15 27 27 H 1.08998 * 109.47737 * 300.00574 * 1 2 3 28 28 H 1.08999 * 109.46764 * 60.00575 * 1 2 3 29 29 H 1.08997 * 109.47255 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47257 * 239.99519 * 2 1 3 31 31 H 1.08999 * 109.46764 * 119.99425 * 2 1 3 32 32 H 1.08996 * 109.47350 * 65.20124 * 3 2 1 33 33 H 1.08998 * 109.47075 * 305.20104 * 3 2 1 34 34 H 1.08998 * 109.47264 * 184.00726 * 5 4 3 35 35 H 1.08995 * 109.47026 * 304.00566 * 5 4 3 36 36 H 1.08993 * 109.47252 * 60.00132 * 7 6 5 37 37 H 1.09004 * 109.46918 * 179.97438 * 7 6 5 38 38 H 1.08996 * 109.47527 * 299.99601 * 7 6 5 39 39 H 1.09005 * 110.70131 * 260.14691 * 8 4 3 40 40 H 1.08996 * 110.70368 * 23.38062 * 8 4 3 41 41 H 1.08996 * 110.98962 * 82.43621 * 9 8 4 42 42 H 1.08997 * 110.98912 * 206.25238 * 9 8 4 43 43 H 1.09005 * 110.37311 * 278.23976 * 10 9 8 44 44 H 1.09002 * 110.37598 * 155.90449 * 10 9 8 45 45 H 1.08997 * 109.46938 * 53.23803 * 12 11 4 46 46 H 1.09002 * 109.46807 * 293.23532 * 12 11 4 47 47 H 1.08000 * 119.87662 * 359.97438 * 14 13 12 48 48 H 1.08002 * 120.12933 * 179.97438 * 15 14 13 49 49 H 0.96997 * 120.00345 * 179.97438 * 20 19 17 50 50 H 1.08007 * 120.12737 * 179.70932 * 25 16 15 51 51 H 1.08001 * 119.88080 * 180.23152 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5644 1.4445 -0.1308 5 6 4.1933 0.7957 1.1038 6 8 3.8061 -0.5782 1.1695 7 6 4.3433 -1.2805 2.2920 8 6 3.9868 0.6758 -1.4006 9 6 5.1796 1.5117 -1.9346 10 6 4.7349 2.9528 -1.5809 11 7 4.0536 2.8279 -0.2747 12 6 2.9501 3.7910 -0.1623 13 6 3.5055 5.1918 -0.1474 14 6 3.6765 5.8768 -1.3406 15 6 4.1823 7.1566 -1.3389 16 6 4.5269 7.7695 -0.1200 17 6 5.0470 9.0843 -0.1060 18 1 4.8802 9.7219 0.7496 19 6 5.7828 9.5573 -1.1983 20 7 6.1728 8.7287 -2.1326 21 14 6.2084 11.3720 -1.3225 22 1 7.5107 11.6219 -0.6540 23 1 6.3031 11.7616 -2.7522 24 1 5.1497 12.1751 -0.6597 25 6 4.3548 7.0625 1.0843 26 6 3.8423 5.7855 1.0593 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.7547 1.9287 0.9329 33 1 1.6026 1.9825 -0.8397 34 1 5.2791 0.8643 1.0370 35 1 3.8511 1.3129 2.0001 36 1 4.0046 -0.8066 3.2132 37 1 4.0026 -2.3157 2.2698 38 1 5.4321 -1.2551 2.2494 39 1 4.3065 -0.3358 -1.1501 40 1 3.1744 0.6556 -2.1270 41 1 6.1025 1.2498 -1.4173 42 1 5.2899 1.3905 -3.0122 43 1 4.0446 3.3327 -2.3341 44 1 5.6023 3.6074 -1.4954 45 1 2.4010 3.6081 0.7613 46 1 2.2788 3.6753 -1.0133 47 1 3.4117 5.4042 -2.2749 48 1 4.3151 7.6882 -2.2696 49 1 6.6825 9.0566 -2.8899 50 1 4.6204 7.5216 2.0252 51 1 3.7058 5.2423 1.9827 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447392218.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:17 Heat of formation + Delta-G solvation = -30.754111 kcal Electronic energy + Delta-G solvation = -27594.639729 eV Core-core repulsion = 24072.219505 eV Total energy + Delta-G solvation = -3522.420224 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.16585 -37.75338 -37.04727 -34.43848 -33.84733 -32.14796 -30.61661 -29.42202 -29.18011 -27.21756 -26.32666 -25.61072 -24.66907 -23.28484 -21.81675 -21.15275 -20.42925 -19.83743 -18.37969 -17.24120 -16.40108 -16.17315 -15.93971 -15.32365 -15.24224 -14.78845 -14.26552 -14.18500 -14.03778 -13.79729 -13.41451 -13.12446 -12.78709 -12.74400 -12.44289 -12.25934 -12.10058 -11.90931 -11.84443 -11.64350 -11.41656 -11.33968 -11.08605 -10.94812 -10.90302 -10.81003 -10.77277 -10.65230 -10.45307 -10.41039 -10.25026 -10.02298 -9.50937 -9.43956 -9.30662 -9.15601 -7.89914 -7.40368 -7.18611 -6.66883 -4.32795 2.76719 3.08791 3.11337 3.13078 3.17925 3.60479 3.97224 4.50680 4.62473 4.80665 4.85842 5.00169 5.14670 5.20552 5.23669 5.27350 5.32358 5.38989 5.51859 5.53701 5.59063 5.63715 5.73207 5.76713 5.81818 5.87008 5.92270 5.96232 5.96828 6.04136 6.10190 6.15137 6.19655 6.34125 6.38346 6.40872 6.44656 6.46276 6.52258 6.61729 6.97082 7.12777 7.13746 7.28749 7.41156 7.46249 7.53270 7.66849 7.91942 8.10036 8.16947 8.35297 8.68822 8.94737 9.01713 10.27578 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.022377 B = 0.002879 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.964088 B = 9723.467908 C = 9822.799638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.125 4.125 4 C 0.104 3.896 5 C 0.084 3.916 6 O -0.384 6.384 7 C 0.030 3.970 8 C -0.125 4.125 9 C -0.134 4.134 10 C 0.054 3.946 11 N -0.515 5.515 12 C 0.116 3.884 13 C -0.201 4.201 14 C -0.096 4.096 15 C -0.157 4.157 16 C 0.112 3.888 17 C -0.466 4.466 18 H 0.075 0.925 19 C 0.074 3.926 20 N -0.803 5.803 21 Si 0.908 3.092 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.262 1.262 25 C -0.223 4.223 26 C -0.074 4.074 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.038 0.962 37 H 0.081 0.919 38 H 0.038 0.962 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.045 0.955 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.028 0.972 47 H 0.082 0.918 48 H 0.117 0.883 49 H 0.278 0.722 50 H 0.090 0.910 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.602 -16.686 2.159 17.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.163 4.163 4 C 0.014 3.986 5 C 0.007 3.993 6 O -0.302 6.302 7 C -0.067 4.067 8 C -0.163 4.163 9 C -0.172 4.172 10 C -0.073 4.073 11 N -0.239 5.239 12 C -0.010 4.010 13 C -0.203 4.203 14 C -0.115 4.115 15 C -0.177 4.177 16 C 0.109 3.891 17 C -0.496 4.496 18 H 0.093 0.907 19 C -0.142 4.142 20 N -0.429 5.429 21 Si 0.733 3.267 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.186 1.186 25 C -0.242 4.242 26 C -0.093 4.093 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.099 0.901 38 H 0.057 0.943 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.064 0.936 44 H 0.101 0.899 45 H 0.085 0.915 46 H 0.046 0.954 47 H 0.100 0.900 48 H 0.134 0.866 49 H 0.089 0.911 50 H 0.108 0.892 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.237 -16.650 2.206 17.322 hybrid contribution 0.035 0.847 -0.504 0.986 sum -4.202 -15.803 1.702 16.441 Atomic orbital electron populations 1.21806 0.96939 1.00892 1.01303 1.21718 0.94284 0.96628 1.03692 1.22126 0.94559 0.97524 1.02109 1.21605 0.93339 0.89547 0.94106 1.22368 0.98514 0.80815 0.97598 1.87892 1.72360 1.23280 1.46679 1.22690 0.97921 0.96955 0.89131 1.22798 0.97774 0.99551 0.96200 1.22769 0.98363 0.95571 1.00519 1.22959 0.98984 0.96074 0.89301 1.63431 1.27203 1.01161 1.32116 1.20973 0.90702 0.89933 0.99413 1.18932 1.13026 0.94752 0.93562 1.20534 1.00448 0.95474 0.95041 1.21300 1.02518 0.94947 0.98917 1.17617 0.88009 0.92544 0.90908 1.19558 1.29583 0.98296 1.02173 0.90702 1.25860 0.94214 0.99483 0.94659 1.69794 1.28109 1.35834 1.09207 0.86318 0.79548 0.82686 0.78153 1.19599 1.20224 1.18628 1.21025 1.10426 0.95372 0.97411 1.20319 0.98741 0.94826 0.95403 0.93152 0.93359 0.93268 0.92320 0.89478 0.91611 0.91860 0.92938 0.93233 0.94303 0.90059 0.94320 0.90326 0.91645 0.91168 0.91270 0.93640 0.89908 0.91457 0.95365 0.89998 0.86551 0.91107 0.89177 0.89633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 37.16 0.37 -1.16 16 2 C -0.13 -1.40 4.91 -26.73 -0.13 -1.53 16 3 C -0.12 -1.58 2.91 -26.73 -0.08 -1.66 16 4 C 0.10 1.39 0.86 -130.61 -0.11 1.28 16 5 C 0.08 1.07 5.12 37.16 0.19 1.26 16 6 O -0.38 -4.36 6.33 -35.23 -0.22 -4.58 16 7 C 0.03 0.26 11.01 101.05 1.11 1.37 16 8 C -0.12 -1.55 4.66 -24.90 -0.12 -1.66 16 9 C -0.13 -1.75 7.08 -24.59 -0.17 -1.92 16 10 C 0.05 0.87 5.51 -2.30 -0.01 0.86 16 11 N -0.51 -8.36 4.80 -217.17 -1.04 -9.40 16 12 C 0.12 2.03 3.82 -4.98 -0.02 2.01 16 13 C -0.20 -4.30 5.06 -104.33 -0.53 -4.82 16 14 C -0.10 -2.20 8.76 -39.66 -0.35 -2.55 16 15 C -0.16 -4.07 8.66 -38.87 -0.34 -4.41 16 16 C 0.11 2.99 5.54 -106.83 -0.59 2.39 16 17 C -0.47 -12.48 9.06 -37.74 -0.34 -12.83 16 18 H 0.07 1.94 7.87 -52.48 -0.41 1.52 16 19 C 0.07 1.88 5.25 -17.34 -0.09 1.79 16 20 N -0.80 -20.99 10.89 55.55 0.61 -20.38 16 21 Si 0.91 18.95 29.57 -169.99 -5.03 13.93 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 24 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 25 C -0.22 -5.51 9.80 -38.88 -0.38 -5.89 16 26 C -0.07 -1.66 9.67 -39.66 -0.38 -2.05 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.66 6.66 -51.93 -0.35 0.32 16 31 H 0.09 1.01 5.59 -51.93 -0.29 0.72 16 32 H 0.07 0.87 6.77 -51.93 -0.35 0.51 16 33 H 0.06 0.85 6.54 -51.93 -0.34 0.51 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.94 7.13 -51.93 -0.37 0.57 16 40 H 0.06 0.80 7.39 -51.93 -0.38 0.41 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.05 0.75 6.76 -51.93 -0.35 0.40 16 44 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 45 H 0.07 1.12 6.35 -51.93 -0.33 0.79 16 46 H 0.03 0.48 6.54 -51.93 -0.34 0.14 16 47 H 0.08 1.72 7.31 -52.49 -0.38 1.34 16 48 H 0.12 3.13 6.27 -52.49 -0.33 2.80 16 49 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 50 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16 51 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 385.65 15.07 5.81 5.81 Total: -1.00 -26.92 385.65 -10.71 -37.62 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -8.86 Total: 6.49 kcal Atomic # 6 Polarization: -27.52 SS G_CDS: -1.97 Total: -29.49 kcal Atomic # 7 Polarization: -29.34 SS G_CDS: -0.44 Total: -29.78 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: -0.22 Total: -4.58 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -26.92 -10.71 -37.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447392218.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.871 kcal (2) G-P(sol) polarization free energy of solvation -26.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds