Wall clock time and date at job start Tue Mar 31 2020 12:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47035 * 2 1 4 4 C 1.52996 * 109.47071 * 185.20353 * 3 2 1 5 5 C 1.52998 * 109.87920 * 295.09972 * 4 3 2 6 6 O 1.42897 * 109.47281 * 64.00792 * 5 4 3 7 7 C 1.42896 * 114.00162 * 179.97438 * 6 5 4 8 8 C 1.54324 * 110.02403 * 56.21978 * 4 3 2 9 9 C 1.55142 * 103.01989 * 141.76727 * 8 4 3 10 10 C 1.54906 * 101.65148 * 324.34669 * 9 8 4 11 11 N 1.47440 * 109.88935 * 174.06828 * 4 3 2 12 12 C 1.46903 * 111.00179 * 3.68862 * 11 4 3 13 13 C 1.50697 * 109.47260 * 173.23351 * 12 11 4 14 14 C 1.38639 * 119.74885 * 89.99988 * 13 12 11 15 15 C 1.37616 * 120.25053 * 179.97438 * 14 13 12 16 16 C 1.40721 * 119.74277 * 0.02562 * 15 14 13 17 17 C 1.41392 * 120.24099 * 180.02562 * 16 15 14 18 18 H 1.08005 * 120.00181 * 150.90357 * 17 16 15 19 19 C 1.39944 * 120.00008 * 330.62024 * 17 16 15 20 20 N 1.30822 * 120.00321 * 349.07786 * 19 17 16 21 21 Si 1.86804 * 120.00139 * 169.07945 * 19 17 16 22 22 H 1.48508 * 109.47032 * 90.00035 * 21 19 17 23 23 H 1.48492 * 109.47361 * 210.00082 * 21 19 17 24 24 H 1.48493 * 109.47201 * 330.00305 * 21 19 17 25 25 C 1.40709 * 119.51019 * 0.26705 * 16 15 14 26 26 C 1.37618 * 119.74920 * 359.47365 * 25 16 15 27 27 H 1.08998 * 109.47737 * 300.00574 * 1 2 3 28 28 H 1.08999 * 109.46764 * 60.00575 * 1 2 3 29 29 H 1.08997 * 109.47255 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47257 * 239.99519 * 2 1 3 31 31 H 1.08999 * 109.46764 * 119.99425 * 2 1 3 32 32 H 1.08996 * 109.47350 * 65.20124 * 3 2 1 33 33 H 1.08998 * 109.47075 * 305.20104 * 3 2 1 34 34 H 1.08998 * 109.47264 * 184.00726 * 5 4 3 35 35 H 1.08995 * 109.47026 * 304.00566 * 5 4 3 36 36 H 1.08993 * 109.47252 * 60.00132 * 7 6 5 37 37 H 1.09004 * 109.46918 * 179.97438 * 7 6 5 38 38 H 1.08996 * 109.47527 * 299.99601 * 7 6 5 39 39 H 1.09005 * 110.70131 * 260.14691 * 8 4 3 40 40 H 1.08996 * 110.70368 * 23.38062 * 8 4 3 41 41 H 1.08996 * 110.98962 * 82.43621 * 9 8 4 42 42 H 1.08997 * 110.98912 * 206.25238 * 9 8 4 43 43 H 1.09005 * 110.37311 * 278.23976 * 10 9 8 44 44 H 1.09002 * 110.37598 * 155.90449 * 10 9 8 45 45 H 1.08997 * 109.46938 * 53.23803 * 12 11 4 46 46 H 1.09002 * 109.46807 * 293.23532 * 12 11 4 47 47 H 1.08000 * 119.87662 * 359.97438 * 14 13 12 48 48 H 1.08002 * 120.12933 * 179.97438 * 15 14 13 49 49 H 0.96997 * 120.00345 * 179.97438 * 20 19 17 50 50 H 1.08007 * 120.12737 * 179.70932 * 25 16 15 51 51 H 1.08001 * 119.88080 * 180.23152 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5644 1.4445 -0.1308 5 6 4.1933 0.7957 1.1038 6 8 3.8061 -0.5782 1.1695 7 6 4.3433 -1.2805 2.2920 8 6 3.9868 0.6758 -1.4006 9 6 5.1796 1.5117 -1.9346 10 6 4.7349 2.9528 -1.5809 11 7 4.0536 2.8279 -0.2747 12 6 2.9501 3.7910 -0.1623 13 6 3.5055 5.1918 -0.1474 14 6 3.6765 5.8768 -1.3406 15 6 4.1823 7.1566 -1.3389 16 6 4.5269 7.7695 -0.1200 17 6 5.0470 9.0843 -0.1060 18 1 4.8802 9.7219 0.7496 19 6 5.7828 9.5573 -1.1983 20 7 6.1728 8.7287 -2.1326 21 14 6.2084 11.3720 -1.3225 22 1 7.5107 11.6219 -0.6540 23 1 6.3031 11.7616 -2.7522 24 1 5.1497 12.1751 -0.6597 25 6 4.3548 7.0625 1.0843 26 6 3.8423 5.7855 1.0593 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.7547 1.9287 0.9329 33 1 1.6026 1.9825 -0.8397 34 1 5.2791 0.8643 1.0370 35 1 3.8511 1.3129 2.0001 36 1 4.0046 -0.8066 3.2132 37 1 4.0026 -2.3157 2.2698 38 1 5.4321 -1.2551 2.2494 39 1 4.3065 -0.3358 -1.1501 40 1 3.1744 0.6556 -2.1270 41 1 6.1025 1.2498 -1.4173 42 1 5.2899 1.3905 -3.0122 43 1 4.0446 3.3327 -2.3341 44 1 5.6023 3.6074 -1.4954 45 1 2.4010 3.6081 0.7613 46 1 2.2788 3.6753 -1.0133 47 1 3.4117 5.4042 -2.2749 48 1 4.3151 7.6882 -2.2696 49 1 6.6825 9.0566 -2.8899 50 1 4.6204 7.5216 2.0252 51 1 3.7058 5.2423 1.9827 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447392218.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:16 Heat of formation + Delta-G solvation = -43.257228 kcal Electronic energy + Delta-G solvation = -27595.181905 eV Core-core repulsion = 24072.219505 eV Total energy + Delta-G solvation = -3522.962400 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.32406 -39.36734 -38.19709 -35.78661 -35.27643 -33.64317 -31.74115 -31.11917 -30.94514 -28.15316 -27.84217 -26.58686 -25.84415 -24.77762 -23.10506 -22.66914 -21.81618 -21.43149 -19.52265 -19.18272 -17.38571 -17.21668 -17.09802 -16.94924 -16.38042 -16.02130 -15.76110 -15.64040 -15.38481 -14.97934 -14.70499 -14.33825 -14.24964 -13.85952 -13.77006 -13.66835 -13.63223 -13.23112 -13.14810 -12.85147 -12.77911 -12.66739 -12.52328 -12.37846 -12.13748 -12.01894 -11.96801 -11.89882 -11.73021 -11.60233 -11.42167 -11.32623 -11.19927 -11.05716 -11.03513 -10.32415 -9.34189 -9.22122 -9.03553 -8.56483 -6.33179 0.96354 1.17899 1.37526 1.48429 1.52323 2.22147 2.54279 2.82036 3.46953 3.59625 3.76685 3.82870 3.93956 4.19921 4.23281 4.27568 4.31116 4.38500 4.41315 4.47824 4.55098 4.55577 4.61542 4.64692 4.65770 4.71344 4.75418 4.82540 4.91673 4.92519 4.94523 5.04939 5.06709 5.08554 5.11902 5.14818 5.18869 5.23414 5.31153 5.38591 5.40298 5.50025 5.52331 5.71875 5.74623 5.96828 6.11400 6.13651 6.22605 6.31412 6.36745 6.43340 6.73764 6.97937 7.06722 8.39997 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.022377 B = 0.002879 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.964088 B = 9723.467908 C = 9822.799638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.121 4.121 4 C 0.103 3.897 5 C 0.091 3.909 6 O -0.388 6.388 7 C 0.024 3.976 8 C -0.116 4.116 9 C -0.126 4.126 10 C 0.053 3.947 11 N -0.527 5.527 12 C 0.125 3.875 13 C -0.187 4.187 14 C -0.096 4.096 15 C -0.180 4.180 16 C 0.078 3.922 17 C -0.505 4.505 18 H 0.071 0.929 19 C 0.032 3.968 20 N -0.836 5.836 21 Si 0.982 3.018 22 H -0.264 1.264 23 H -0.267 1.267 24 H -0.260 1.260 25 C -0.238 4.238 26 C -0.077 4.077 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.044 0.956 35 H 0.043 0.957 36 H 0.042 0.958 37 H 0.101 0.899 38 H 0.042 0.958 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.039 0.961 44 H 0.051 0.949 45 H 0.080 0.920 46 H 0.036 0.964 47 H 0.098 0.902 48 H 0.097 0.903 49 H 0.285 0.715 50 H 0.094 0.906 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.230 -18.658 2.369 19.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.159 4.159 4 C 0.013 3.987 5 C 0.014 3.986 6 O -0.306 6.306 7 C -0.072 4.072 8 C -0.154 4.154 9 C -0.164 4.164 10 C -0.075 4.075 11 N -0.251 5.251 12 C -0.002 4.002 13 C -0.188 4.188 14 C -0.115 4.115 15 C -0.199 4.199 16 C 0.076 3.924 17 C -0.535 4.535 18 H 0.090 0.910 19 C -0.181 4.181 20 N -0.463 5.463 21 Si 0.803 3.197 22 H -0.189 1.189 23 H -0.191 1.191 24 H -0.184 1.184 25 C -0.257 4.257 26 C -0.096 4.096 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.119 0.881 38 H 0.060 0.940 39 H 0.106 0.894 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.058 0.942 44 H 0.070 0.930 45 H 0.098 0.902 46 H 0.054 0.946 47 H 0.116 0.884 48 H 0.115 0.885 49 H 0.095 0.905 50 H 0.112 0.888 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.871 -18.650 2.428 19.428 hybrid contribution 0.191 1.270 -0.511 1.382 sum -4.680 -17.380 1.917 18.101 Atomic orbital electron populations 1.21789 0.96075 1.01680 1.01244 1.21636 0.94971 0.95296 1.03629 1.22079 0.93753 0.98605 1.01493 1.21670 0.94007 0.87877 0.95111 1.22174 0.97823 0.81755 0.96853 1.87872 1.72573 1.22340 1.47833 1.22880 0.98235 0.97680 0.88429 1.22749 0.97490 0.99585 0.95592 1.22725 0.98658 0.93335 1.01643 1.22878 0.97758 0.97612 0.89248 1.63286 1.26927 1.02639 1.32270 1.20872 0.90982 0.87862 1.00464 1.19361 1.10461 0.96479 0.92528 1.20726 0.99667 0.94547 0.96544 1.21247 1.04330 0.96288 0.98055 1.17944 0.89149 0.93354 0.91911 1.19797 1.31459 0.98985 1.03286 0.91037 1.26708 0.93510 1.04082 0.93822 1.69863 1.28722 1.37857 1.09837 0.85207 0.79306 0.76626 0.78548 1.18862 1.19120 1.18358 1.21217 1.11053 0.96436 0.97033 1.20622 0.97916 0.94116 0.96944 0.93186 0.93469 0.92094 0.92203 0.89625 0.92123 0.92504 0.93768 0.93864 0.93908 0.88093 0.93972 0.89360 0.91059 0.91052 0.89657 0.94238 0.93003 0.90166 0.94614 0.88354 0.88469 0.90488 0.88826 0.87054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.91 71.98 0.71 -1.92 16 2 C -0.12 -2.30 4.91 30.59 0.15 -2.15 16 3 C -0.12 -2.79 2.91 30.59 0.09 -2.70 16 4 C 0.10 2.55 0.86 3.87 0.00 2.55 16 5 C 0.09 2.15 5.12 71.98 0.37 2.52 16 6 O -0.39 -7.80 6.33 -148.98 -0.94 -8.74 16 7 C 0.02 0.36 11.01 113.37 1.25 1.60 16 8 C -0.12 -2.58 4.66 31.78 0.15 -2.43 16 9 C -0.13 -3.05 7.08 31.98 0.23 -2.82 16 10 C 0.05 1.66 5.51 86.77 0.48 2.14 16 11 N -0.53 -16.42 4.80 -841.00 -4.04 -20.46 16 12 C 0.12 4.17 3.82 85.56 0.33 4.50 16 13 C -0.19 -7.90 5.06 -19.67 -0.10 -8.00 16 14 C -0.10 -4.46 8.76 22.22 0.19 -4.27 16 15 C -0.18 -9.67 8.66 22.73 0.20 -9.47 16 16 C 0.08 4.37 5.54 -21.29 -0.12 4.26 16 17 C -0.50 -28.21 9.06 23.46 0.21 -27.99 16 18 H 0.07 3.86 7.87 -2.91 -0.02 3.84 16 19 C 0.03 1.66 5.25 85.26 0.45 2.11 16 20 N -0.84 -45.20 10.89 21.83 0.24 -44.96 16 21 Si 0.98 39.60 29.57 68.60 2.03 41.63 16 22 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 23 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 24 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 25 C -0.24 -12.04 9.80 22.73 0.22 -11.82 16 26 C -0.08 -3.45 9.67 22.22 0.21 -3.23 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 1.17 6.66 -2.39 -0.02 1.15 16 31 H 0.09 1.74 5.59 -2.39 -0.01 1.72 16 32 H 0.06 1.46 6.77 -2.39 -0.02 1.44 16 33 H 0.06 1.39 6.54 -2.39 -0.02 1.37 16 34 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.09 1.84 7.13 -2.38 -0.02 1.83 16 40 H 0.07 1.53 7.39 -2.39 -0.02 1.51 16 41 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.04 1.28 6.76 -2.38 -0.02 1.26 16 44 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.08 2.50 6.35 -2.39 -0.02 2.49 16 46 H 0.04 1.16 6.54 -2.39 -0.02 1.14 16 47 H 0.10 4.16 7.31 -2.91 -0.02 4.14 16 48 H 0.10 5.52 6.27 -2.91 -0.02 5.50 16 49 H 0.28 13.98 8.30 -92.71 -0.77 13.21 16 50 H 0.09 4.53 8.06 -2.91 -0.02 4.51 16 51 H 0.11 4.34 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -59.64 385.65 3.19 -56.45 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: 0.89 Total: 33.22 kcal Atomic # 6 Polarization: -62.15 SS G_CDS: 5.02 Total: -57.13 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -3.80 Total: -65.42 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -0.94 Total: -8.74 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Total: -59.64 3.19 -56.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447392218.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.188 kcal (2) G-P(sol) polarization free energy of solvation -59.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds