Wall clock time and date at job start Tue Mar 31 2020 11:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46774 * 2 1 4 4 N 1.46897 * 110.01917 * 55.88797 * 3 2 1 5 5 C 1.46900 * 111.00350 * 57.44338 * 4 3 2 6 6 C 1.50699 * 109.47334 * 174.76964 * 5 4 3 7 7 C 1.38291 * 119.97274 * 89.99714 * 6 5 4 8 8 C 1.38235 * 120.11295 * 179.97438 * 7 6 5 9 9 C 1.38168 * 120.05701 * 359.96308 * 8 7 6 10 10 C 1.38716 * 119.94396 * 0.02562 * 9 8 7 11 11 O 1.35889 * 120.05896 * 180.02562 * 10 9 8 12 12 C 1.42906 * 116.99918 * 0.02562 * 11 10 9 13 13 C 1.52999 * 109.47082 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.47144 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00028 * 180.02562 * 14 13 12 17 17 N 1.31506 * 120.00289 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99830 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47470 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47192 * 119.99796 * 18 16 14 21 21 H 1.48507 * 109.46905 * 239.99772 * 18 16 14 22 22 C 1.38116 * 119.97012 * 269.72165 * 6 5 4 23 23 C 1.53882 * 110.07028 * 177.30314 * 3 2 1 24 24 C 1.54267 * 106.60035 * 119.30755 * 23 3 2 25 25 C 1.54894 * 104.19215 * 23.60723 * 24 23 3 26 26 C 1.54267 * 110.03638 * 294.49047 * 3 2 1 27 27 H 1.09005 * 109.46793 * 296.88637 * 1 2 3 28 28 H 1.09000 * 109.47408 * 56.88875 * 1 2 3 29 29 H 1.09003 * 109.47025 * 176.89202 * 1 2 3 30 30 H 1.09001 * 109.46984 * 240.00493 * 2 1 3 31 31 H 1.08997 * 109.47440 * 120.00061 * 2 1 3 32 32 H 1.00896 * 111.00166 * 181.39876 * 4 3 2 33 33 H 1.08998 * 109.46779 * 294.76867 * 5 4 3 34 34 H 1.08997 * 109.47216 * 54.76670 * 5 4 3 35 35 H 1.08001 * 119.93944 * 359.97438 * 7 6 5 36 36 H 1.08005 * 119.97768 * 179.97438 * 8 7 6 37 37 H 1.08003 * 120.03190 * 180.02562 * 9 8 7 38 38 H 1.09003 * 109.47019 * 299.99514 * 12 11 10 39 39 H 1.08993 * 109.47011 * 60.00065 * 12 11 10 40 40 H 1.09002 * 109.47360 * 299.99882 * 13 12 11 41 41 H 1.09002 * 109.47496 * 59.99489 * 13 12 11 42 42 H 0.96998 * 120.00331 * 180.02562 * 17 16 14 43 43 H 1.08003 * 120.03048 * 0.02562 * 22 6 5 44 44 H 1.09000 * 110.02966 * 238.59018 * 23 3 2 45 45 H 1.08999 * 110.03429 * 0.02562 * 23 3 2 46 46 H 1.09003 * 110.48354 * 264.93424 * 24 23 3 47 47 H 1.08996 * 110.48536 * 142.28896 * 24 23 3 48 48 H 1.09004 * 110.75014 * 203.73937 * 25 24 23 49 49 H 1.09002 * 110.75519 * 80.37676 * 25 24 23 50 50 H 1.09000 * 110.48485 * 335.74058 * 26 3 2 51 51 H 1.08994 * 110.48493 * 98.37805 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.4777 2.1746 1.1427 5 6 1.8139 1.5116 2.4097 6 6 1.3328 2.3558 3.5617 7 6 0.0599 2.1708 4.0695 8 6 -0.3841 2.9433 5.1264 9 6 0.4436 3.9019 5.6787 10 6 1.7210 4.0893 5.1712 11 8 2.5372 5.0311 5.7129 12 6 2.0150 5.7923 6.8038 13 6 3.0698 6.7941 7.2778 14 6 2.5193 7.5964 8.4285 15 1 1.5172 7.4107 8.7857 16 6 3.2947 8.5683 9.0246 17 7 4.5148 8.7948 8.5893 18 14 2.6126 9.5624 10.4515 19 1 1.2273 9.1168 10.7478 20 1 3.4656 9.3580 11.6497 21 1 2.6023 11.0030 10.0910 22 6 2.1657 3.3097 4.1130 23 6 3.5772 1.4593 0.0680 24 6 4.0673 2.1674 -1.2119 25 6 2.8655 3.0433 -1.6452 26 6 1.6496 2.1411 -1.3189 27 1 -0.3633 0.4648 0.9166 28 1 -0.3634 0.5614 -0.8608 29 1 -0.3633 -1.0262 -0.0557 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.7867 3.1351 1.1442 33 1 1.3307 0.5353 2.4482 34 1 2.8943 1.3851 2.4782 35 1 -0.5883 1.4216 3.6396 36 1 -1.3788 2.7973 5.5211 37 1 0.0965 4.5049 6.5047 38 1 1.1238 6.3292 6.4785 39 1 1.7565 5.1222 7.6236 40 1 3.9607 6.2570 7.6032 41 1 3.3288 7.4642 6.4581 42 1 5.0604 9.4782 9.0089 43 1 3.1612 3.4510 3.7186 44 1 3.9059 2.0106 0.9489 45 1 3.9606 0.4395 0.1006 46 1 4.3050 1.4366 -1.9849 47 1 4.9349 2.7904 -0.9948 48 1 2.9105 3.2599 -2.7126 49 1 2.8298 3.9648 -1.0641 50 1 1.4970 1.4061 -2.1092 51 1 0.7529 2.7449 -1.1799 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449427277.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:28 Heat of formation + Delta-G solvation = -43.841195 kcal Electronic energy + Delta-G solvation = -26193.055101 eV Core-core repulsion = 22670.067379 eV Total energy + Delta-G solvation = -3522.987722 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.14751 -39.50399 -37.31936 -34.65441 -33.38844 -32.78635 -30.89148 -30.41444 -29.14505 -29.06836 -27.22998 -25.28476 -24.58160 -22.96949 -22.29171 -21.66064 -20.92221 -20.10476 -19.11010 -17.69342 -16.37787 -16.17496 -16.01922 -15.60680 -15.55114 -15.30925 -14.88046 -14.62776 -14.43139 -14.32557 -13.66999 -13.41187 -13.31872 -13.02764 -12.78059 -12.59163 -12.44454 -12.32031 -12.10169 -11.69080 -11.45562 -11.40760 -11.34786 -11.28453 -11.20273 -11.16291 -10.93361 -10.88781 -10.75097 -10.67730 -10.55843 -10.43740 -9.86129 -9.66561 -9.29527 -8.79744 -8.47386 -8.45034 -7.82383 -6.11549 -4.16096 1.45211 1.71292 3.25754 3.32841 3.36494 3.76409 3.86147 4.18753 4.25412 4.35110 4.40628 4.59911 4.82131 4.89362 4.95814 4.99400 5.11294 5.15495 5.22584 5.25012 5.31927 5.34754 5.36451 5.43211 5.50370 5.54251 5.57009 5.60506 5.65315 5.67749 5.75715 5.78414 5.84665 5.89862 5.94379 6.03111 6.03777 6.06534 6.09397 6.19484 6.22092 6.56261 6.56989 6.72789 6.73680 6.90543 7.01799 7.24310 7.50029 7.62844 7.80797 8.06115 8.22950 8.89734 9.48339 11.00106 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019945 B = 0.002234 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.494715 B =12528.822534 C =13518.283902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C 0.113 3.887 4 N -0.667 5.667 5 C 0.098 3.902 6 C -0.051 4.051 7 C -0.149 4.149 8 C -0.081 4.081 9 C -0.211 4.211 10 C 0.145 3.855 11 O -0.317 6.317 12 C 0.066 3.934 13 C 0.025 3.975 14 C -0.526 4.526 15 H 0.059 0.941 16 C 0.060 3.940 17 N -0.889 5.889 18 Si 0.899 3.101 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.123 4.123 25 C -0.130 4.130 26 C -0.111 4.111 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.345 0.655 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.129 0.871 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.027 0.973 41 H 0.027 0.973 42 H 0.263 0.737 43 H 0.123 0.877 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.065 0.935 49 H 0.067 0.933 50 H 0.070 0.930 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.486 -18.178 -19.808 27.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.147 4.147 3 C 0.022 3.978 4 N -0.298 5.298 5 C -0.030 4.030 6 C -0.052 4.052 7 C -0.168 4.168 8 C -0.099 4.099 9 C -0.230 4.230 10 C 0.098 3.902 11 O -0.230 6.230 12 C -0.008 4.008 13 C -0.012 4.012 14 C -0.564 4.564 15 H 0.077 0.923 16 C -0.142 4.142 17 N -0.528 5.528 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.177 4.177 23 C -0.196 4.196 24 C -0.161 4.161 25 C -0.167 4.167 26 C -0.149 4.149 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.164 0.836 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.147 0.853 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.072 0.928 43 H 0.141 0.859 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.084 0.916 49 H 0.086 0.914 50 H 0.088 0.912 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.749 -18.306 -19.864 27.843 hybrid contribution 0.542 0.906 1.130 1.547 sum -6.207 -17.399 -18.734 26.310 Atomic orbital electron populations 1.21667 0.94995 1.00393 1.03006 1.21639 0.97013 0.94518 1.01481 1.21622 0.90946 0.94060 0.91195 1.60730 1.62640 1.05814 1.00627 1.20906 0.98393 0.96990 0.86747 1.19434 0.93954 0.95868 0.95933 1.20747 0.95742 1.01908 0.98397 1.20896 0.98902 0.94624 0.95526 1.21390 0.94655 1.02925 1.04029 1.19148 0.89502 0.89101 0.92436 1.86166 1.41433 1.46412 1.48999 1.23320 0.99670 0.92870 0.84974 1.19127 0.93448 0.92259 0.96377 1.21008 1.00597 1.18870 1.15903 0.92310 1.24995 0.94822 0.97033 0.97380 1.69981 1.08500 1.32855 1.41439 0.86433 0.79113 0.79875 0.81978 1.19628 1.20825 1.20822 1.20269 1.00900 0.98305 0.98178 1.22994 0.96948 1.01074 0.98553 1.22314 0.97999 0.98616 0.97128 1.22550 0.94808 0.98385 1.00980 1.22434 0.98431 0.98558 0.95477 0.91422 0.92841 0.93838 0.91992 0.92182 0.83643 0.89964 0.94096 0.86424 0.86232 0.85332 0.93139 0.93164 0.95435 0.95421 0.92753 0.85933 0.91487 0.91607 0.91791 0.91814 0.91612 0.91391 0.91182 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.47 37.16 0.35 -0.73 16 2 C -0.11 -0.80 4.08 -26.73 -0.11 -0.91 16 3 C 0.11 0.88 0.52 -130.48 -0.07 0.81 16 4 N -0.67 -6.15 5.21 -100.08 -0.52 -6.67 16 5 C 0.10 0.97 4.83 -4.98 -0.02 0.95 16 6 C -0.05 -0.64 5.34 -104.65 -0.56 -1.20 16 7 C -0.15 -1.84 9.70 -39.56 -0.38 -2.22 16 8 C -0.08 -1.08 10.04 -39.61 -0.40 -1.47 16 9 C -0.21 -3.33 9.04 -39.43 -0.36 -3.69 16 10 C 0.15 2.54 6.69 -39.21 -0.26 2.28 16 11 O -0.32 -6.58 10.14 -19.39 -0.20 -6.78 16 12 C 0.07 1.42 4.68 37.16 0.17 1.59 16 13 C 0.03 0.66 5.34 -27.89 -0.15 0.51 16 14 C -0.53 -14.70 9.11 -34.44 -0.31 -15.01 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 18 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 19 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C -0.16 -2.36 9.64 -39.43 -0.38 -2.74 16 23 C -0.16 -1.24 5.52 -25.61 -0.14 -1.38 16 24 C -0.12 -0.90 6.83 -25.07 -0.17 -1.07 16 25 C -0.13 -0.94 6.91 -24.74 -0.17 -1.11 16 26 C -0.11 -0.82 5.03 -25.08 -0.13 -0.95 16 27 H 0.07 0.59 7.11 -51.93 -0.37 0.22 16 28 H 0.05 0.40 7.33 -51.93 -0.38 0.02 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.42 8.06 -51.93 -0.42 0.00 16 31 H 0.06 0.46 6.77 -51.93 -0.35 0.10 16 32 H 0.34 3.46 8.65 -39.29 -0.34 3.12 16 33 H 0.08 0.77 6.22 -51.93 -0.32 0.44 16 34 H 0.04 0.41 6.40 -51.93 -0.33 0.08 16 35 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 37 H 0.13 2.01 6.30 -52.48 -0.33 1.68 16 38 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 39 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.12 1.75 8.06 -52.48 -0.42 1.33 16 44 H 0.07 0.60 6.70 -51.93 -0.35 0.25 16 45 H 0.07 0.50 7.67 -51.93 -0.40 0.10 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.07 0.48 7.80 -51.93 -0.40 0.07 16 51 H 0.08 0.63 8.04 -51.93 -0.42 0.21 16 LS Contribution 397.30 15.07 5.99 5.99 Total: -1.00 -29.35 397.30 -11.18 -40.53 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -8.98 Total: 1.19 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -3.18 Total: -24.74 kcal Atomic # 7 Polarization: -32.68 SS G_CDS: 0.21 Total: -32.47 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.20 Total: -6.78 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.35 -11.18 -40.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449427277.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.313 kcal (2) G-P(sol) polarization free energy of solvation -29.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds