Wall clock time and date at job start Tue Mar 31 2020 12:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47148 * 2 1 4 4 C 1.52996 * 109.46975 * 119.99892 * 2 1 3 5 5 C 1.53005 * 109.46866 * 65.00349 * 4 2 1 6 6 C 1.53005 * 109.47059 * 179.97438 * 5 4 2 7 7 C 1.52991 * 109.47107 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47399 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99790 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00373 * 179.72123 * 8 7 6 11 11 C 1.46496 * 120.00057 * 175.34801 * 10 8 7 12 12 H 1.09005 * 109.47372 * 38.57372 * 11 10 8 13 13 C 1.53002 * 109.47282 * 158.57282 * 11 10 8 14 14 C 1.50704 * 109.47218 * 294.53300 * 13 11 10 15 15 H 1.08003 * 119.99874 * 355.15140 * 14 13 11 16 16 C 1.37874 * 119.99783 * 175.14566 * 14 13 11 17 17 N 1.31517 * 119.99492 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 120.00438 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47440 * 89.99604 * 18 16 14 20 20 H 1.48503 * 109.47286 * 209.99906 * 18 16 14 21 21 H 1.48505 * 109.46924 * 329.99710 * 18 16 14 22 22 C 1.50699 * 109.47332 * 278.57507 * 11 10 8 23 23 C 1.38236 * 119.99813 * 319.72674 * 22 11 10 24 24 C 1.38237 * 119.99665 * 179.79090 * 23 22 11 25 25 C 1.38235 * 120.00100 * 0.43582 * 24 23 22 26 26 C 1.38231 * 120.00009 * 359.81858 * 25 24 23 27 27 C 1.38234 * 120.00305 * 359.97259 * 26 25 24 28 28 H 1.09003 * 109.47176 * 59.99737 * 1 2 3 29 29 H 1.08996 * 109.47275 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47211 * 300.00141 * 1 2 3 31 31 H 1.09001 * 109.46715 * 240.00368 * 2 1 3 32 32 H 1.08995 * 109.47298 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47297 * 300.00190 * 3 2 1 34 34 H 1.09010 * 109.47249 * 59.99975 * 3 2 1 35 35 H 1.09000 * 109.47513 * 305.00124 * 4 2 1 36 36 H 1.09005 * 109.47138 * 184.99406 * 4 2 1 37 37 H 1.09000 * 109.47238 * 59.99606 * 5 4 2 38 38 H 1.08997 * 109.47072 * 299.99498 * 5 4 2 39 39 H 1.09000 * 109.46926 * 59.99489 * 6 5 4 40 40 H 1.09005 * 109.46594 * 299.99386 * 6 5 4 41 41 H 1.09000 * 109.47661 * 59.99919 * 7 6 5 42 42 H 1.09004 * 109.47264 * 299.99863 * 7 6 5 43 43 H 0.96995 * 120.00029 * 355.34784 * 10 8 7 44 44 H 1.09003 * 109.46828 * 54.53346 * 13 11 10 45 45 H 1.08995 * 109.47196 * 174.53361 * 13 11 10 46 46 H 0.97000 * 119.99880 * 180.02562 * 17 16 14 47 47 H 1.07997 * 120.00213 * 359.97438 * 23 22 11 48 48 H 1.07998 * 119.99812 * 180.27578 * 24 23 22 49 49 H 1.08001 * 119.99769 * 179.83788 * 25 24 23 50 50 H 1.08006 * 119.99785 * 180.02562 * 26 25 24 51 51 H 1.07999 * 120.00420 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6352 -2.1955 1.1879 6 6 2.1457 -2.9169 2.4369 7 6 1.7416 -4.3912 2.3752 8 6 2.2449 -5.1020 3.6050 9 8 2.8662 -4.4897 4.4477 10 7 2.0003 -6.4169 3.7710 11 6 2.5752 -7.1303 4.9141 12 1 2.5494 -6.4875 5.7940 13 6 1.7630 -8.3984 5.1849 14 6 0.3716 -8.0197 5.6229 15 1 0.1175 -6.9812 5.7760 16 6 -0.5770 -8.9990 5.8281 17 7 -1.7910 -8.6686 6.2108 18 14 -0.1374 -10.7952 5.5639 19 1 0.3730 -11.3719 6.8335 20 1 -1.3458 -11.5421 5.1313 21 1 0.9102 -10.8995 4.5165 22 6 4.0024 -7.5041 4.6068 23 6 4.3423 -7.9560 3.3453 24 6 5.6522 -8.2947 3.0622 25 6 6.6207 -8.1901 4.0431 26 6 6.2799 -7.7431 5.3059 27 6 4.9707 -7.4003 5.5879 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6053 -0.2617 2.1370 36 1 3.1263 -0.6444 1.2951 37 1 2.0698 -2.6550 0.3001 38 1 0.5489 -2.2724 1.1420 39 1 1.7115 -2.4575 3.3248 40 1 3.2321 -2.8400 2.4822 41 1 2.1762 -4.8504 1.4873 42 1 0.6552 -4.4686 2.3295 43 1 1.4435 -6.8909 3.1337 44 1 1.7075 -8.9956 4.2747 45 1 2.2462 -8.9783 5.9711 46 1 -2.4583 -9.3576 6.3555 47 1 3.5849 -8.0416 2.5802 48 1 5.9186 -8.6436 2.0754 49 1 7.6436 -8.4572 3.8225 50 1 7.0366 -7.6610 6.0722 51 1 4.7043 -7.0515 6.5747 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457666130.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:10 Heat of formation + Delta-G solvation = -59.591906 kcal Electronic energy + Delta-G solvation = -26159.490710 eV Core-core repulsion = 22635.819986 eV Total energy + Delta-G solvation = -3523.670724 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.70725 -38.53548 -37.32627 -35.33799 -33.86489 -32.66307 -31.31603 -30.56278 -29.51910 -29.06128 -27.38047 -25.44209 -24.19526 -22.33573 -21.78081 -21.33135 -20.28209 -19.90826 -19.58966 -17.15993 -16.55176 -16.35653 -15.98044 -15.57082 -15.13670 -14.84049 -14.44480 -14.31636 -14.29545 -14.00189 -13.54890 -13.24551 -13.09924 -12.93295 -12.64336 -12.50543 -12.42157 -12.38922 -12.33070 -11.86822 -11.72205 -11.52068 -11.37828 -11.25735 -11.09545 -10.81564 -10.75241 -10.73615 -10.67649 -10.54449 -10.41145 -10.12337 -9.85608 -9.37319 -9.26794 -8.65194 -8.61414 -8.44462 -8.29002 -6.12699 -4.12522 1.67642 1.70388 3.18417 3.24469 3.32615 3.34350 3.74944 4.15206 4.36326 4.57315 4.69380 4.74137 5.02330 5.08628 5.13599 5.17771 5.18814 5.21682 5.27521 5.37271 5.39216 5.44707 5.48162 5.51977 5.59877 5.66584 5.69486 5.78784 5.81336 5.83901 5.85691 5.88390 5.96876 6.02413 6.09206 6.13647 6.21078 6.24195 6.31381 6.36254 6.43743 6.45443 6.73444 6.75903 6.84281 6.92789 7.06452 7.30434 7.36206 7.63732 8.15157 8.42842 8.81563 8.93177 9.48001 11.00108 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009913 B = 0.003162 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.756839 B = 8852.308208 C =11036.458853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.148 4.148 4 C -0.115 4.115 5 C -0.121 4.121 6 C -0.102 4.102 7 C -0.141 4.141 8 C 0.511 3.489 9 O -0.551 6.551 10 N -0.704 5.704 11 C 0.194 3.806 12 H 0.089 0.911 13 C -0.015 4.015 14 C -0.520 4.520 15 H 0.076 0.924 16 C 0.070 3.930 17 N -0.898 5.898 18 Si 0.875 3.125 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.265 1.265 22 C -0.076 4.076 23 C -0.109 4.109 24 C -0.126 4.126 25 C -0.134 4.134 26 C -0.123 4.123 27 C -0.107 4.107 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.401 0.599 44 H 0.025 0.975 45 H 0.028 0.972 46 H 0.264 0.736 47 H 0.117 0.883 48 H 0.115 0.885 49 H 0.114 0.886 50 H 0.117 0.883 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.440 10.162 -12.821 19.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.153 4.153 5 C -0.159 4.159 6 C -0.140 4.140 7 C -0.181 4.181 8 C 0.297 3.703 9 O -0.429 6.429 10 N -0.353 5.353 11 C 0.089 3.911 12 H 0.107 0.893 13 C -0.052 4.052 14 C -0.558 4.558 15 H 0.094 0.906 16 C -0.131 4.131 17 N -0.536 5.536 18 Si 0.702 3.298 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.189 1.189 22 C -0.077 4.077 23 C -0.128 4.128 24 C -0.144 4.144 25 C -0.152 4.152 26 C -0.141 4.141 27 C -0.126 4.126 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.236 0.764 44 H 0.043 0.957 45 H 0.046 0.954 46 H 0.074 0.926 47 H 0.135 0.865 48 H 0.133 0.867 49 H 0.132 0.868 50 H 0.135 0.865 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.697 10.516 -12.169 19.315 hybrid contribution -0.219 -1.364 -0.360 1.428 sum 10.477 9.152 -12.528 18.721 Atomic orbital electron populations 1.21902 0.95314 1.02025 1.01478 1.21134 0.95935 0.96002 0.98591 1.21850 1.00865 0.96242 1.01572 1.21651 1.00809 0.95225 0.97587 1.21677 1.01215 0.94967 0.97995 1.21312 1.01659 0.92945 0.98060 1.21676 1.02901 0.96781 0.96759 1.20613 0.79619 0.82209 0.87872 1.90649 1.41797 1.66015 1.44450 1.45936 1.51597 1.09179 1.28569 1.19910 0.86863 0.95414 0.88872 0.89277 1.19884 0.96028 0.91941 0.97396 1.21021 0.92978 0.95691 1.46086 0.90633 1.24990 0.94839 0.98811 0.94497 1.69909 1.03430 1.33591 1.46713 0.86858 0.78083 0.85591 0.79221 1.20219 1.21351 1.18926 1.20595 0.96633 0.96720 0.93729 1.20934 0.96026 0.99139 0.96676 1.21055 0.93396 1.00946 0.98965 1.21015 0.98938 1.01445 0.93807 1.21064 0.96234 0.99994 0.96769 1.21049 0.92622 0.99554 0.99375 0.93109 0.92240 0.92712 0.91419 0.92818 0.92965 0.92726 0.91877 0.92046 0.92197 0.91677 0.91277 0.91544 0.89480 0.89001 0.76403 0.95668 0.95391 0.92628 0.86486 0.86680 0.86766 0.86506 0.86045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.95 37.16 0.33 -0.85 16 2 C -0.10 -0.79 2.92 -90.62 -0.26 -1.05 16 3 C -0.15 -1.09 9.19 37.16 0.34 -0.75 16 4 C -0.12 -1.05 4.68 -26.73 -0.13 -1.18 16 5 C -0.12 -1.17 4.97 -26.73 -0.13 -1.30 16 6 C -0.10 -1.26 4.50 -26.73 -0.12 -1.38 16 7 C -0.14 -1.81 5.70 -27.89 -0.16 -1.97 16 8 C 0.51 8.92 7.73 -10.99 -0.08 8.84 16 9 O -0.55 -11.57 15.68 5.55 0.09 -11.49 16 10 N -0.70 -12.50 4.09 -54.93 -0.22 -12.72 16 11 C 0.19 3.85 2.11 -69.08 -0.15 3.71 16 12 H 0.09 1.98 7.49 -51.93 -0.39 1.59 16 13 C -0.01 -0.33 3.56 -27.88 -0.10 -0.43 16 14 C -0.52 -13.91 9.40 -34.44 -0.32 -14.24 16 15 H 0.08 2.24 7.99 -52.48 -0.42 1.82 16 16 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -26.72 13.96 55.43 0.77 -25.95 16 18 Si 0.88 20.78 27.57 -169.99 -4.69 16.09 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.26 -5.98 6.41 56.52 0.36 -5.62 16 22 C -0.08 -1.35 4.86 -104.62 -0.51 -1.86 16 23 C -0.11 -1.75 9.32 -39.58 -0.37 -2.12 16 24 C -0.13 -1.76 10.05 -39.58 -0.40 -2.16 16 25 C -0.13 -1.81 10.05 -39.59 -0.40 -2.21 16 26 C -0.12 -1.77 10.05 -39.59 -0.40 -2.16 16 27 C -0.11 -1.80 9.67 -39.58 -0.38 -2.18 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.48 6.57 -51.93 -0.34 0.13 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.61 6.57 -51.93 -0.34 0.27 16 39 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 40 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.40 6.50 8.57 -40.82 -0.35 6.15 16 44 H 0.03 0.55 6.86 -51.93 -0.36 0.19 16 45 H 0.03 0.64 7.81 -51.93 -0.41 0.23 16 46 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 47 H 0.12 1.72 7.73 -52.49 -0.41 1.32 16 48 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 49 H 0.11 1.23 8.06 -52.49 -0.42 0.80 16 50 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 51 H 0.12 1.96 8.04 -52.49 -0.42 1.54 16 LS Contribution 410.95 15.07 6.19 6.19 Total: -1.00 -31.45 410.95 -10.55 -42.00 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -9.36 Total: 7.30 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -3.33 Total: -21.44 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.55 Total: -38.67 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.69 Total: 16.09 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.45 -10.55 -42.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457666130.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.588 kcal (2) G-P(sol) polarization free energy of solvation -31.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds