Wall clock time and date at job start Tue Mar 31 2020 12:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47148 * 2 1 4 4 C 1.52996 * 109.46975 * 119.99892 * 2 1 3 5 5 C 1.53005 * 109.46866 * 65.00349 * 4 2 1 6 6 C 1.53005 * 109.47059 * 179.97438 * 5 4 2 7 7 C 1.52991 * 109.47107 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47399 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99790 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00373 * 179.72123 * 8 7 6 11 11 C 1.46496 * 120.00057 * 175.34801 * 10 8 7 12 12 H 1.09005 * 109.47372 * 38.57372 * 11 10 8 13 13 C 1.53002 * 109.47282 * 158.57282 * 11 10 8 14 14 C 1.50704 * 109.47218 * 294.53300 * 13 11 10 15 15 H 1.08003 * 119.99874 * 355.15140 * 14 13 11 16 16 C 1.37874 * 119.99783 * 175.14566 * 14 13 11 17 17 N 1.31517 * 119.99492 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 120.00438 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47440 * 89.99604 * 18 16 14 20 20 H 1.48503 * 109.47286 * 209.99906 * 18 16 14 21 21 H 1.48505 * 109.46924 * 329.99710 * 18 16 14 22 22 C 1.50699 * 109.47332 * 278.57507 * 11 10 8 23 23 C 1.38236 * 119.99813 * 319.72674 * 22 11 10 24 24 C 1.38237 * 119.99665 * 179.79090 * 23 22 11 25 25 C 1.38235 * 120.00100 * 0.43582 * 24 23 22 26 26 C 1.38231 * 120.00009 * 359.81858 * 25 24 23 27 27 C 1.38234 * 120.00305 * 359.97259 * 26 25 24 28 28 H 1.09003 * 109.47176 * 59.99737 * 1 2 3 29 29 H 1.08996 * 109.47275 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47211 * 300.00141 * 1 2 3 31 31 H 1.09001 * 109.46715 * 240.00368 * 2 1 3 32 32 H 1.08995 * 109.47298 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47297 * 300.00190 * 3 2 1 34 34 H 1.09010 * 109.47249 * 59.99975 * 3 2 1 35 35 H 1.09000 * 109.47513 * 305.00124 * 4 2 1 36 36 H 1.09005 * 109.47138 * 184.99406 * 4 2 1 37 37 H 1.09000 * 109.47238 * 59.99606 * 5 4 2 38 38 H 1.08997 * 109.47072 * 299.99498 * 5 4 2 39 39 H 1.09000 * 109.46926 * 59.99489 * 6 5 4 40 40 H 1.09005 * 109.46594 * 299.99386 * 6 5 4 41 41 H 1.09000 * 109.47661 * 59.99919 * 7 6 5 42 42 H 1.09004 * 109.47264 * 299.99863 * 7 6 5 43 43 H 0.96995 * 120.00029 * 355.34784 * 10 8 7 44 44 H 1.09003 * 109.46828 * 54.53346 * 13 11 10 45 45 H 1.08995 * 109.47196 * 174.53361 * 13 11 10 46 46 H 0.97000 * 119.99880 * 180.02562 * 17 16 14 47 47 H 1.07997 * 120.00213 * 359.97438 * 23 22 11 48 48 H 1.07998 * 119.99812 * 180.27578 * 24 23 22 49 49 H 1.08001 * 119.99769 * 179.83788 * 25 24 23 50 50 H 1.08006 * 119.99785 * 180.02562 * 26 25 24 51 51 H 1.07999 * 120.00420 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6352 -2.1955 1.1879 6 6 2.1457 -2.9169 2.4369 7 6 1.7416 -4.3912 2.3752 8 6 2.2449 -5.1020 3.6050 9 8 2.8662 -4.4897 4.4477 10 7 2.0003 -6.4169 3.7710 11 6 2.5752 -7.1303 4.9141 12 1 2.5494 -6.4875 5.7940 13 6 1.7630 -8.3984 5.1849 14 6 0.3716 -8.0197 5.6229 15 1 0.1175 -6.9812 5.7760 16 6 -0.5770 -8.9990 5.8281 17 7 -1.7910 -8.6686 6.2108 18 14 -0.1374 -10.7952 5.5639 19 1 0.3730 -11.3719 6.8335 20 1 -1.3458 -11.5421 5.1313 21 1 0.9102 -10.8995 4.5165 22 6 4.0024 -7.5041 4.6068 23 6 4.3423 -7.9560 3.3453 24 6 5.6522 -8.2947 3.0622 25 6 6.6207 -8.1901 4.0431 26 6 6.2799 -7.7431 5.3059 27 6 4.9707 -7.4003 5.5879 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6053 -0.2617 2.1370 36 1 3.1263 -0.6444 1.2951 37 1 2.0698 -2.6550 0.3001 38 1 0.5489 -2.2724 1.1420 39 1 1.7115 -2.4575 3.3248 40 1 3.2321 -2.8400 2.4822 41 1 2.1762 -4.8504 1.4873 42 1 0.6552 -4.4686 2.3295 43 1 1.4435 -6.8909 3.1337 44 1 1.7075 -8.9956 4.2747 45 1 2.2462 -8.9783 5.9711 46 1 -2.4583 -9.3576 6.3555 47 1 3.5849 -8.0416 2.5802 48 1 5.9186 -8.6436 2.0754 49 1 7.6436 -8.4572 3.8225 50 1 7.0366 -7.6610 6.0722 51 1 4.7043 -7.0515 6.5747 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457666130.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:09 Heat of formation + Delta-G solvation = -75.475896 kcal Electronic energy + Delta-G solvation = -26160.179492 eV Core-core repulsion = 22635.819986 eV Total energy + Delta-G solvation = -3524.359506 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.09306 -39.77720 -38.09506 -36.85497 -34.85525 -34.68847 -32.71975 -31.71454 -30.99685 -30.20287 -27.98582 -26.94226 -25.33387 -23.60292 -23.28072 -22.34902 -21.43808 -21.11022 -20.67348 -19.07166 -17.96558 -17.69042 -17.06296 -16.86716 -16.34598 -16.12519 -15.87516 -15.44973 -15.22722 -15.04913 -14.79178 -14.58323 -14.36988 -14.18927 -14.08027 -13.87044 -13.59832 -13.44364 -13.22953 -13.05460 -13.02468 -12.59849 -12.53829 -12.41969 -12.29297 -12.15763 -11.92578 -11.73619 -11.71158 -11.65681 -11.44633 -11.42641 -11.32022 -11.22303 -10.83278 -10.69767 -9.96286 -9.76684 -9.54464 -8.28917 -6.34116 0.48816 0.54685 1.37242 1.38205 1.49139 1.78635 2.34989 2.40304 2.95810 3.06650 3.76818 3.86843 3.94722 3.99411 4.02673 4.11489 4.17506 4.20084 4.28966 4.31948 4.38277 4.52617 4.58739 4.61613 4.71915 4.72420 4.75513 4.81528 4.85645 4.87608 4.95997 4.99201 5.03617 5.08857 5.14346 5.16530 5.17279 5.21722 5.26830 5.33946 5.36531 5.44357 5.54190 5.58044 5.59449 5.60621 5.63578 5.64868 5.88207 6.17055 6.25049 6.70671 6.76532 7.29914 7.41748 8.87499 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009913 B = 0.003162 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.756839 B = 8852.308208 C =11036.458853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.096 4.096 3 C -0.148 4.148 4 C -0.115 4.115 5 C -0.112 4.112 6 C -0.097 4.097 7 C -0.132 4.132 8 C 0.503 3.497 9 O -0.593 6.593 10 N -0.701 5.701 11 C 0.204 3.796 12 H 0.049 0.951 13 C -0.005 4.005 14 C -0.520 4.520 15 H 0.029 0.971 16 C 0.012 3.988 17 N -0.948 5.948 18 Si 0.946 3.054 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.240 1.240 22 C -0.100 4.100 23 C -0.119 4.119 24 C -0.123 4.123 25 C -0.128 4.128 26 C -0.124 4.124 27 C -0.133 4.133 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.044 0.956 40 H 0.054 0.946 41 H 0.120 0.880 42 H 0.104 0.896 43 H 0.410 0.590 44 H 0.041 0.959 45 H 0.026 0.974 46 H 0.266 0.734 47 H 0.127 0.873 48 H 0.149 0.851 49 H 0.151 0.849 50 H 0.142 0.858 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.625 8.631 -15.794 21.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.114 4.114 3 C -0.205 4.205 4 C -0.153 4.153 5 C -0.149 4.149 6 C -0.135 4.135 7 C -0.171 4.171 8 C 0.291 3.709 9 O -0.475 6.475 10 N -0.351 5.351 11 C 0.098 3.902 12 H 0.067 0.933 13 C -0.042 4.042 14 C -0.558 4.558 15 H 0.047 0.953 16 C -0.186 4.186 17 N -0.588 5.588 18 Si 0.769 3.231 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.163 1.163 22 C -0.101 4.101 23 C -0.137 4.137 24 C -0.141 4.141 25 C -0.146 4.146 26 C -0.142 4.142 27 C -0.152 4.152 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.138 0.862 42 H 0.122 0.878 43 H 0.246 0.754 44 H 0.059 0.941 45 H 0.044 0.956 46 H 0.075 0.925 47 H 0.145 0.855 48 H 0.166 0.834 49 H 0.168 0.832 50 H 0.160 0.840 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.888 8.988 -15.165 21.837 hybrid contribution -0.862 -0.794 0.630 1.331 sum 12.026 8.194 -14.535 20.568 Atomic orbital electron populations 1.21909 0.95213 1.02023 1.01638 1.21117 0.95989 0.96278 0.98025 1.21849 1.00998 0.95868 1.01816 1.21642 1.00678 0.95027 0.97919 1.21612 1.01471 0.94955 0.96906 1.21261 1.00808 0.92854 0.98584 1.21725 1.03580 0.96507 0.95297 1.21485 0.78741 0.81844 0.88781 1.90625 1.43794 1.66731 1.46315 1.45923 1.51612 1.09571 1.27987 1.19497 0.88680 0.93532 0.88462 0.93321 1.19734 0.93585 0.93347 0.97570 1.21183 0.95322 0.93618 1.45641 0.95264 1.25908 0.94485 1.03990 0.94185 1.70067 1.04873 1.35352 1.48520 0.85734 0.78461 0.79079 0.79803 1.19979 1.20988 1.16271 1.20400 0.95153 0.99187 0.95355 1.21113 0.97575 0.99234 0.95824 1.21460 0.92373 0.99621 1.00605 1.21485 1.00637 0.99539 0.92898 1.21380 0.95466 0.99115 0.98236 1.21176 0.94061 1.00915 0.99026 0.92243 0.92323 0.93297 0.90739 0.92642 0.92094 0.93132 0.92939 0.92227 0.90589 0.91188 0.93709 0.92694 0.86230 0.87781 0.75428 0.94125 0.95617 0.92490 0.85528 0.83361 0.83158 0.84030 0.87190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.95 71.98 0.64 -1.54 16 2 C -0.10 -1.40 2.92 -10.80 -0.03 -1.43 16 3 C -0.15 -2.00 9.19 71.98 0.66 -1.34 16 4 C -0.12 -2.02 4.68 30.59 0.14 -1.88 16 5 C -0.11 -2.02 4.97 30.60 0.15 -1.87 16 6 C -0.10 -2.40 4.50 30.59 0.14 -2.26 16 7 C -0.13 -3.28 5.70 29.84 0.17 -3.11 16 8 C 0.50 18.10 7.73 87.66 0.68 18.77 16 9 O -0.59 -26.36 15.68 -3.04 -0.05 -26.40 16 10 N -0.70 -25.53 4.09 -446.10 -1.82 -27.36 16 11 C 0.20 8.42 2.11 44.25 0.09 8.51 16 12 H 0.05 2.36 7.49 -2.38 -0.02 2.34 16 13 C 0.00 -0.21 3.56 29.85 0.11 -0.11 16 14 C -0.52 -28.90 9.40 25.60 0.24 -28.66 16 15 H 0.03 1.85 7.99 -2.91 -0.02 1.82 16 16 C 0.01 0.66 5.47 84.65 0.46 1.12 16 17 N -0.95 -58.20 13.96 21.45 0.30 -57.90 16 18 Si 0.95 42.64 27.57 68.60 1.89 44.53 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 21 H -0.24 -9.76 6.41 99.48 0.64 -9.12 16 22 C -0.10 -3.57 4.86 -19.86 -0.10 -3.66 16 23 C -0.12 -3.56 9.32 22.27 0.21 -3.36 16 24 C -0.12 -2.98 10.05 22.27 0.22 -2.75 16 25 C -0.13 -2.95 10.05 22.27 0.22 -2.73 16 26 C -0.12 -3.32 10.05 22.27 0.22 -3.09 16 27 C -0.13 -4.50 9.67 22.27 0.22 -4.29 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.85 6.57 -2.39 -0.02 0.84 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.07 1.22 6.57 -2.39 -0.02 1.20 16 39 H 0.04 1.30 8.10 -2.39 -0.02 1.29 16 40 H 0.05 1.47 8.10 -2.38 -0.02 1.45 16 41 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.41 13.24 8.57 -92.71 -0.79 12.44 16 44 H 0.04 1.72 6.86 -2.39 -0.02 1.70 16 45 H 0.03 1.18 7.81 -2.39 -0.02 1.16 16 46 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 47 H 0.13 3.42 7.73 -2.91 -0.02 3.40 16 48 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 49 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 50 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 51 H 0.11 3.79 8.04 -2.91 -0.02 3.77 16 Total: -1.00 -71.98 410.95 4.78 -67.19 By element: Atomic # 1 Polarization: 33.61 SS G_CDS: 0.01 Total: 33.62 kcal Atomic # 6 Polarization: -38.13 SS G_CDS: 4.46 Total: -33.68 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -1.53 Total: -85.26 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.05 Total: -26.40 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.89 Total: 44.53 kcal Total: -71.98 4.78 -67.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457666130.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.283 kcal (2) G-P(sol) polarization free energy of solvation -71.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds