Wall clock time and date at job start Tue Mar 31 2020 12:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47269 * 2 1 4 4 C 1.53002 * 109.46943 * 179.97438 * 3 2 1 5 5 C 1.50704 * 109.46682 * 179.97438 * 4 3 2 6 6 C 1.38226 * 120.00280 * 269.72265 * 5 4 3 7 7 C 1.38241 * 120.00289 * 179.76818 * 6 5 4 8 8 C 1.38231 * 119.99453 * 0.51192 * 7 6 5 9 9 C 1.50698 * 120.00014 * 179.72509 * 8 7 6 10 10 C 1.50707 * 109.47108 * 270.02122 * 9 8 7 11 11 O 1.21284 * 119.99707 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00111 * 179.97438 * 10 9 8 13 13 C 1.46489 * 119.99889 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.47458 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.46618 * 300.00359 * 14 13 12 16 16 C 1.53000 * 109.46825 * 59.99739 * 14 13 12 17 17 C 1.50694 * 109.47536 * 179.97438 * 14 13 12 18 18 H 1.08002 * 120.00112 * 1.34942 * 17 14 13 19 19 C 1.37880 * 119.99949 * 181.34360 * 17 14 13 20 20 N 1.31519 * 119.99905 * 193.97720 * 19 17 14 21 21 Si 1.86798 * 119.99874 * 13.98034 * 19 17 14 22 22 H 1.48503 * 109.47185 * 84.54744 * 21 19 17 23 23 H 1.48501 * 109.46825 * 204.54708 * 21 19 17 24 24 H 1.48505 * 109.47165 * 324.54535 * 21 19 17 25 25 C 1.38241 * 120.00392 * 359.74593 * 8 7 6 26 26 C 1.38238 * 119.99802 * 359.97438 * 25 8 7 27 27 H 1.08996 * 109.47064 * 60.00214 * 1 2 3 28 28 H 1.09003 * 109.46953 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46898 * 300.00362 * 1 2 3 30 30 H 1.09000 * 109.46898 * 239.99638 * 2 1 3 31 31 H 1.09008 * 109.46727 * 119.99955 * 2 1 3 32 32 H 1.08994 * 109.47562 * 59.99568 * 3 2 1 33 33 H 1.09005 * 109.46720 * 299.99765 * 3 2 1 34 34 H 1.08998 * 109.47342 * 60.00195 * 4 3 2 35 35 H 1.08996 * 109.47252 * 299.99702 * 4 3 2 36 36 H 1.08003 * 120.00397 * 0.02562 * 6 5 4 37 37 H 1.07994 * 120.00333 * 180.23595 * 7 6 5 38 38 H 1.09006 * 109.47142 * 30.02093 * 9 8 7 39 39 H 1.08999 * 109.47663 * 150.02416 * 9 8 7 40 40 H 0.97006 * 119.99808 * 0.02562 * 12 10 9 41 41 H 1.09003 * 109.47520 * 299.99738 * 13 12 10 42 42 H 1.08998 * 109.47656 * 59.99909 * 13 12 10 43 43 H 1.08991 * 109.47656 * 69.36457 * 15 14 13 44 44 H 1.09005 * 109.46826 * 189.36552 * 15 14 13 45 45 H 1.09007 * 109.47033 * 309.36004 * 15 14 13 46 46 H 1.08994 * 109.47334 * 60.00185 * 16 14 13 47 47 H 1.09000 * 109.46870 * 180.02562 * 16 14 13 48 48 H 1.09006 * 109.47463 * 300.00333 * 16 14 13 49 49 H 0.96993 * 119.99881 * 180.02562 * 20 19 17 50 50 H 1.07997 * 120.00181 * 179.97438 * 25 8 7 51 51 H 1.07994 * 120.00067 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0724 2.8632 0.0000 6 6 4.3088 3.5122 -1.1973 7 6 4.7650 4.8172 -1.1979 8 6 4.9949 5.4695 -0.0010 9 6 5.4981 6.8899 -0.0016 10 6 7.0052 6.8890 -0.0010 11 8 7.6109 5.8382 0.0003 12 7 7.6798 8.0557 -0.0018 13 6 9.1447 8.0548 -0.0018 14 6 9.6558 9.4969 -0.0022 15 6 9.1462 10.2181 -1.2516 16 6 9.1462 10.2189 1.2468 17 6 11.1627 9.4960 -0.0015 18 1 11.7022 8.5605 -0.0229 19 6 11.8529 10.6893 0.0263 20 7 13.1390 10.7116 -0.2478 21 14 10.9612 12.2742 0.4533 22 1 10.9022 12.4268 1.9292 23 1 11.6906 13.4263 -0.1348 24 1 9.5819 12.2294 -0.0953 25 6 4.7636 4.8186 1.1964 26 6 4.3019 3.5156 1.1970 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8901 32 1 1.6768 1.9563 0.8899 33 1 1.6768 1.9562 -0.8901 34 1 3.9338 0.9284 -0.8891 35 1 3.9331 0.9287 0.8908 36 1 4.1331 3.0013 -2.1325 37 1 4.9460 5.3255 -2.1334 38 1 5.1354 7.4036 -0.8920 39 1 5.1348 7.4045 0.8880 40 1 7.1953 8.8961 -0.0024 41 1 9.5078 7.5414 0.8886 42 1 9.5078 7.5400 -0.8913 43 1 8.0693 10.3660 -1.1721 44 1 9.6403 11.1858 -1.3395 45 1 9.3662 9.6164 -2.1336 46 1 9.5091 9.7051 2.1369 47 1 9.5099 11.2464 1.2463 48 1 8.0562 10.2196 1.2468 49 1 13.6246 11.5510 -0.2279 50 1 4.9436 5.3281 2.1315 51 1 4.1216 3.0070 2.1324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457983391.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:50 Heat of formation + Delta-G solvation = -32.678865 kcal Electronic energy + Delta-G solvation = -25745.169842 eV Core-core repulsion = 22222.666154 eV Total energy + Delta-G solvation = -3522.503687 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.99382 -38.94676 -36.79290 -36.07221 -33.35521 -33.25174 -31.53227 -30.94903 -30.32572 -27.43857 -26.40921 -25.66937 -24.82421 -23.63309 -22.78018 -21.51336 -20.86655 -19.98704 -19.15609 -16.90923 -16.33070 -16.17021 -16.05658 -15.43447 -15.36268 -15.15789 -14.68932 -14.65636 -14.38047 -13.54694 -13.49110 -13.45252 -13.38914 -13.10333 -12.94764 -12.79358 -12.57791 -12.27658 -12.17632 -12.08332 -12.02768 -11.63924 -11.57505 -11.43144 -11.25119 -11.03753 -10.82306 -10.81331 -10.44685 -10.32083 -10.18419 -10.08099 -9.56299 -9.13537 -8.91188 -8.70750 -8.54816 -8.50675 -8.43925 -6.15662 -4.12949 1.28192 1.41390 2.98634 3.22685 3.29586 3.37504 3.50775 3.92029 4.34342 4.42590 4.55969 4.66379 4.75205 4.75290 4.94325 4.98282 4.98980 5.14856 5.21197 5.23969 5.35033 5.37797 5.40599 5.44708 5.47329 5.51742 5.65990 5.66407 5.76748 5.79143 5.90107 5.97747 6.03422 6.04949 6.05369 6.06201 6.33946 6.37790 6.47140 6.51441 6.56578 6.58754 6.61779 6.68121 6.78771 6.96172 6.98756 7.20985 7.41682 7.71201 7.94546 8.43876 8.62687 8.89861 9.48112 10.97445 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.043464 B = 0.001943 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.062565 B =14408.760206 C =14541.052628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.113 4.113 4 C -0.080 4.080 5 C -0.087 4.087 6 C -0.117 4.117 7 C -0.102 4.102 8 C -0.063 4.063 9 C -0.106 4.106 10 C 0.506 3.494 11 O -0.539 6.539 12 N -0.724 5.724 13 C 0.143 3.857 14 C 0.028 3.972 15 C -0.141 4.141 16 C -0.147 4.147 17 C -0.513 4.513 18 H 0.076 0.924 19 C 0.075 3.925 20 N -0.891 5.891 21 Si 0.886 3.114 22 H -0.286 1.286 23 H -0.305 1.305 24 H -0.249 1.249 25 C -0.103 4.103 26 C -0.117 4.117 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.396 0.604 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.022 0.978 44 H 0.056 0.944 45 H 0.047 0.953 46 H 0.053 0.947 47 H 0.041 0.959 48 H 0.029 0.971 49 H 0.264 0.736 50 H 0.119 0.881 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.242 -13.645 0.486 28.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.151 4.151 4 C -0.117 4.117 5 C -0.087 4.087 6 C -0.135 4.135 7 C -0.121 4.121 8 C -0.063 4.063 9 C -0.146 4.146 10 C 0.291 3.709 11 O -0.416 6.416 12 N -0.376 5.376 13 C 0.020 3.980 14 C 0.026 3.974 15 C -0.199 4.199 16 C -0.204 4.204 17 C -0.551 4.551 18 H 0.094 0.906 19 C -0.128 4.128 20 N -0.527 5.527 21 Si 0.719 3.281 22 H -0.214 1.214 23 H -0.234 1.234 24 H -0.175 1.175 25 C -0.121 4.121 26 C -0.135 4.135 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.230 0.770 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.041 0.959 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.059 0.941 48 H 0.048 0.952 49 H 0.074 0.926 50 H 0.137 0.863 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -24.597 -14.303 0.461 28.457 hybrid contribution -0.388 1.486 0.321 1.569 sum -24.985 -12.817 0.782 28.092 Atomic orbital electron populations 1.21777 0.95927 1.01506 1.01840 1.21560 0.95834 0.96916 1.02040 1.21604 0.94465 0.96614 1.02415 1.20606 0.95475 0.92824 1.02822 1.19820 0.99591 0.96010 0.93253 1.20931 1.00406 0.94739 0.97402 1.20958 0.98807 0.94877 0.97414 1.19282 0.98633 0.94853 0.93539 1.20719 0.93502 0.95404 1.04963 1.20417 0.89254 0.84230 0.76995 1.90714 1.70271 1.31253 1.49367 1.46325 1.09069 1.07829 1.74371 1.21485 0.76288 0.98753 1.01443 1.18730 0.97054 0.90110 0.91478 1.22288 0.97098 1.01195 0.99289 1.22353 0.97637 1.00070 1.00324 1.20718 0.87583 0.94722 1.52079 0.90587 1.24980 0.94728 0.98833 0.94218 1.69953 1.08582 1.27152 1.47045 0.87289 0.79823 0.82792 0.78238 1.21387 1.23393 1.17528 1.20956 0.98798 0.94916 0.97397 1.20931 1.00413 0.94751 0.97404 0.92761 0.92857 0.92771 0.92018 0.92023 0.91870 0.91861 0.91126 0.91126 0.86347 0.86282 0.88236 0.88260 0.76967 0.92098 0.91988 0.95935 0.92548 0.93433 0.92817 0.94060 0.95175 0.92566 0.86302 0.86355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.47 16 2 C -0.13 -0.75 5.93 -26.73 -0.16 -0.91 16 3 C -0.11 -0.79 5.20 -26.73 -0.14 -0.93 16 4 C -0.08 -0.64 5.35 -27.88 -0.15 -0.79 16 5 C -0.09 -0.91 5.13 -104.62 -0.54 -1.45 16 6 C -0.12 -1.29 9.70 -39.58 -0.38 -1.67 16 7 C -0.10 -1.23 9.70 -39.58 -0.38 -1.62 16 8 C -0.06 -0.78 4.37 -104.62 -0.46 -1.24 16 9 C -0.11 -1.20 5.83 -29.03 -0.17 -1.37 16 10 C 0.51 8.07 7.82 -10.98 -0.09 7.99 16 11 O -0.54 -10.96 16.03 5.55 0.09 -10.87 16 12 N -0.72 -11.61 5.00 -60.29 -0.30 -11.91 16 13 C 0.14 2.86 4.49 -4.04 -0.02 2.84 16 14 C 0.03 0.60 0.50 -155.66 -0.08 0.52 16 15 C -0.14 -2.84 7.53 37.16 0.28 -2.56 16 16 C -0.15 -2.94 7.52 37.16 0.28 -2.66 16 17 C -0.51 -13.78 8.62 -34.44 -0.30 -14.08 16 18 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 19 C 0.07 2.08 5.32 -17.82 -0.09 1.99 16 20 N -0.89 -26.60 13.96 55.43 0.77 -25.83 16 21 Si 0.89 20.98 22.79 -169.99 -3.87 17.11 16 22 H -0.29 -6.76 7.10 56.52 0.40 -6.36 16 23 H -0.31 -7.41 7.11 56.52 0.40 -7.00 16 24 H -0.25 -5.34 4.65 56.52 0.26 -5.08 16 25 C -0.10 -1.23 9.70 -39.58 -0.38 -1.62 16 26 C -0.12 -1.29 9.70 -39.58 -0.38 -1.67 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.36 8.14 -51.92 -0.42 -0.07 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 35 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 36 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 37 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 38 H 0.10 0.91 8.09 -51.93 -0.42 0.49 16 39 H 0.10 0.90 8.09 -51.93 -0.42 0.48 16 40 H 0.40 5.37 6.26 -40.82 -0.26 5.12 16 41 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 43 H 0.02 0.37 7.13 -51.93 -0.37 0.00 16 44 H 0.06 1.21 4.30 -51.93 -0.22 0.99 16 45 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16 46 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.04 0.88 2.25 -51.93 -0.12 0.76 16 48 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 49 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 50 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 51 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 396.19 15.07 5.97 5.97 Total: -1.00 -31.87 396.19 -9.17 -41.04 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -9.04 Total: 4.19 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -2.79 Total: -19.70 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.47 Total: -37.74 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -3.87 Total: 17.11 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.87 -9.17 -41.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457983391.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.360 kcal (2) G-P(sol) polarization free energy of solvation -31.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds