Wall clock time and date at job start Tue Mar 31 2020 12:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47269 * 2 1 4 4 C 1.53002 * 109.46943 * 179.97438 * 3 2 1 5 5 C 1.50704 * 109.46682 * 179.97438 * 4 3 2 6 6 C 1.38226 * 120.00280 * 269.72265 * 5 4 3 7 7 C 1.38241 * 120.00289 * 179.76818 * 6 5 4 8 8 C 1.38231 * 119.99453 * 0.51192 * 7 6 5 9 9 C 1.50698 * 120.00014 * 179.72509 * 8 7 6 10 10 C 1.50707 * 109.47108 * 270.02122 * 9 8 7 11 11 O 1.21284 * 119.99707 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00111 * 179.97438 * 10 9 8 13 13 C 1.46489 * 119.99889 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.47458 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.46618 * 300.00359 * 14 13 12 16 16 C 1.53000 * 109.46825 * 59.99739 * 14 13 12 17 17 C 1.50694 * 109.47536 * 179.97438 * 14 13 12 18 18 H 1.08002 * 120.00112 * 1.34942 * 17 14 13 19 19 C 1.37880 * 119.99949 * 181.34360 * 17 14 13 20 20 N 1.31519 * 119.99905 * 193.97720 * 19 17 14 21 21 Si 1.86798 * 119.99874 * 13.98034 * 19 17 14 22 22 H 1.48503 * 109.47185 * 84.54744 * 21 19 17 23 23 H 1.48501 * 109.46825 * 204.54708 * 21 19 17 24 24 H 1.48505 * 109.47165 * 324.54535 * 21 19 17 25 25 C 1.38241 * 120.00392 * 359.74593 * 8 7 6 26 26 C 1.38238 * 119.99802 * 359.97438 * 25 8 7 27 27 H 1.08996 * 109.47064 * 60.00214 * 1 2 3 28 28 H 1.09003 * 109.46953 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46898 * 300.00362 * 1 2 3 30 30 H 1.09000 * 109.46898 * 239.99638 * 2 1 3 31 31 H 1.09008 * 109.46727 * 119.99955 * 2 1 3 32 32 H 1.08994 * 109.47562 * 59.99568 * 3 2 1 33 33 H 1.09005 * 109.46720 * 299.99765 * 3 2 1 34 34 H 1.08998 * 109.47342 * 60.00195 * 4 3 2 35 35 H 1.08996 * 109.47252 * 299.99702 * 4 3 2 36 36 H 1.08003 * 120.00397 * 0.02562 * 6 5 4 37 37 H 1.07994 * 120.00333 * 180.23595 * 7 6 5 38 38 H 1.09006 * 109.47142 * 30.02093 * 9 8 7 39 39 H 1.08999 * 109.47663 * 150.02416 * 9 8 7 40 40 H 0.97006 * 119.99808 * 0.02562 * 12 10 9 41 41 H 1.09003 * 109.47520 * 299.99738 * 13 12 10 42 42 H 1.08998 * 109.47656 * 59.99909 * 13 12 10 43 43 H 1.08991 * 109.47656 * 69.36457 * 15 14 13 44 44 H 1.09005 * 109.46826 * 189.36552 * 15 14 13 45 45 H 1.09007 * 109.47033 * 309.36004 * 15 14 13 46 46 H 1.08994 * 109.47334 * 60.00185 * 16 14 13 47 47 H 1.09000 * 109.46870 * 180.02562 * 16 14 13 48 48 H 1.09006 * 109.47463 * 300.00333 * 16 14 13 49 49 H 0.96993 * 119.99881 * 180.02562 * 20 19 17 50 50 H 1.07997 * 120.00181 * 179.97438 * 25 8 7 51 51 H 1.07994 * 120.00067 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0724 2.8632 0.0000 6 6 4.3088 3.5122 -1.1973 7 6 4.7650 4.8172 -1.1979 8 6 4.9949 5.4695 -0.0010 9 6 5.4981 6.8899 -0.0016 10 6 7.0052 6.8890 -0.0010 11 8 7.6109 5.8382 0.0003 12 7 7.6798 8.0557 -0.0018 13 6 9.1447 8.0548 -0.0018 14 6 9.6558 9.4969 -0.0022 15 6 9.1462 10.2181 -1.2516 16 6 9.1462 10.2189 1.2468 17 6 11.1627 9.4960 -0.0015 18 1 11.7022 8.5605 -0.0229 19 6 11.8529 10.6893 0.0263 20 7 13.1390 10.7116 -0.2478 21 14 10.9612 12.2742 0.4533 22 1 10.9022 12.4268 1.9292 23 1 11.6906 13.4263 -0.1348 24 1 9.5819 12.2294 -0.0953 25 6 4.7636 4.8186 1.1964 26 6 4.3019 3.5156 1.1970 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8901 32 1 1.6768 1.9563 0.8899 33 1 1.6768 1.9562 -0.8901 34 1 3.9338 0.9284 -0.8891 35 1 3.9331 0.9287 0.8908 36 1 4.1331 3.0013 -2.1325 37 1 4.9460 5.3255 -2.1334 38 1 5.1354 7.4036 -0.8920 39 1 5.1348 7.4045 0.8880 40 1 7.1953 8.8961 -0.0024 41 1 9.5078 7.5414 0.8886 42 1 9.5078 7.5400 -0.8913 43 1 8.0693 10.3660 -1.1721 44 1 9.6403 11.1858 -1.3395 45 1 9.3662 9.6164 -2.1336 46 1 9.5091 9.7051 2.1369 47 1 9.5099 11.2464 1.2463 48 1 8.0562 10.2196 1.2468 49 1 13.6246 11.5510 -0.2279 50 1 4.9436 5.3281 2.1315 51 1 4.1216 3.0070 2.1324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457983391.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:49 Heat of formation + Delta-G solvation = -50.945011 kcal Electronic energy + Delta-G solvation = -25745.961921 eV Core-core repulsion = 22222.666154 eV Total energy + Delta-G solvation = -3523.295767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.08678 -40.03586 -38.37922 -36.73183 -34.96064 -34.10972 -33.39350 -31.77326 -31.10701 -28.43236 -27.99789 -27.21833 -26.55787 -24.40766 -23.61130 -22.15360 -21.74601 -21.14234 -20.87901 -18.37008 -17.92634 -17.27194 -16.96196 -16.91388 -16.38745 -16.31901 -15.79878 -15.71200 -15.04071 -14.94849 -14.86606 -14.69939 -14.27094 -14.26427 -14.13148 -13.95140 -13.80099 -13.74588 -13.48575 -13.09798 -12.91887 -12.72901 -12.40535 -12.34541 -12.14840 -12.12593 -11.96729 -11.94778 -11.75964 -11.75042 -11.47113 -11.37697 -11.09863 -10.86310 -10.61514 -10.38372 -9.96514 -9.75703 -9.36506 -8.30186 -6.32162 0.42995 0.56616 1.36920 1.38258 1.51693 1.74790 2.35083 2.35211 2.94748 3.06077 3.71705 3.87121 3.90662 4.04693 4.10935 4.15697 4.20320 4.23732 4.31423 4.36303 4.38663 4.42672 4.56926 4.60956 4.67124 4.77187 4.80258 4.81053 4.84382 4.84875 4.87703 4.95389 4.99162 4.99302 5.07125 5.15705 5.19083 5.23131 5.24533 5.32566 5.40427 5.45206 5.51514 5.54710 5.56772 5.72389 5.73160 5.77213 5.80646 6.17445 6.30284 6.68966 6.74184 7.32592 7.38989 8.87117 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.043464 B = 0.001943 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.062565 B =14408.760206 C =14541.052628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.107 4.107 4 C -0.078 4.078 5 C -0.091 4.091 6 C -0.129 4.129 7 C -0.118 4.118 8 C -0.083 4.083 9 C -0.093 4.093 10 C 0.506 3.494 11 O -0.589 6.589 12 N -0.712 5.712 13 C 0.159 3.841 14 C 0.026 3.974 15 C -0.140 4.140 16 C -0.146 4.146 17 C -0.520 4.520 18 H 0.023 0.977 19 C 0.015 3.985 20 N -0.947 5.947 21 Si 0.947 3.053 22 H -0.282 1.282 23 H -0.316 1.316 24 H -0.201 1.201 25 C -0.118 4.118 26 C -0.129 4.129 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.133 0.867 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.413 0.587 41 H 0.037 0.963 42 H 0.035 0.965 43 H 0.070 0.930 44 H 0.045 0.955 45 H 0.038 0.962 46 H 0.044 0.956 47 H 0.035 0.965 48 H 0.077 0.923 49 H 0.264 0.736 50 H 0.128 0.872 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.313 -12.661 0.783 31.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.145 4.145 4 C -0.115 4.115 5 C -0.091 4.091 6 C -0.147 4.147 7 C -0.136 4.136 8 C -0.084 4.084 9 C -0.133 4.133 10 C 0.293 3.707 11 O -0.469 6.469 12 N -0.365 5.365 13 C 0.035 3.965 14 C 0.025 3.975 15 C -0.197 4.197 16 C -0.203 4.203 17 C -0.558 4.558 18 H 0.042 0.958 19 C -0.182 4.182 20 N -0.586 5.586 21 Si 0.776 3.224 22 H -0.210 1.210 23 H -0.245 1.245 24 H -0.124 1.124 25 C -0.136 4.136 26 C -0.146 4.146 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.151 0.849 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.148 0.852 40 H 0.251 0.749 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.088 0.912 44 H 0.063 0.937 45 H 0.057 0.943 46 H 0.063 0.937 47 H 0.053 0.947 48 H 0.096 0.904 49 H 0.073 0.927 50 H 0.146 0.854 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -28.732 -13.315 0.757 31.676 hybrid contribution 0.936 0.982 0.210 1.373 sum -27.795 -12.333 0.967 30.424 Atomic orbital electron populations 1.21780 0.95549 1.01916 1.01838 1.21547 0.96157 0.96202 1.02303 1.21537 0.93557 0.97251 1.02123 1.20631 0.96178 0.91420 1.03254 1.20134 0.98878 0.97056 0.93033 1.21214 1.00311 0.94777 0.98359 1.21215 0.99066 0.95483 0.97839 1.19501 0.99387 0.95703 0.93803 1.20737 0.89130 0.95574 1.07826 1.21275 0.91195 0.83052 0.75132 1.90701 1.71747 1.33056 1.51384 1.46067 1.07012 1.09065 1.74349 1.20962 0.79075 0.97339 0.99172 1.18673 0.93508 0.91573 0.93762 1.22206 0.99917 0.99900 0.97675 1.22284 1.00666 0.98861 0.98474 1.21045 0.90916 0.92704 1.51108 0.95817 1.25906 0.95370 1.02976 0.93997 1.70124 1.10908 1.28158 1.49440 0.86303 0.80854 0.77126 0.78123 1.20953 1.24522 1.12426 1.21217 0.99023 0.95513 0.97824 1.21216 1.00291 0.94786 0.98355 0.92779 0.92268 0.92779 0.91772 0.91765 0.92142 0.92154 0.90705 0.90683 0.84873 0.85476 0.85277 0.85225 0.74889 0.94419 0.94620 0.91168 0.93662 0.94255 0.93674 0.94687 0.90390 0.92709 0.85430 0.84847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 71.98 0.71 -0.74 16 2 C -0.12 -1.29 5.93 30.60 0.18 -1.11 16 3 C -0.11 -1.33 5.20 30.59 0.16 -1.17 16 4 C -0.08 -1.14 5.35 29.85 0.16 -0.98 16 5 C -0.09 -1.81 5.13 -19.87 -0.10 -1.91 16 6 C -0.13 -2.68 9.70 22.27 0.22 -2.47 16 7 C -0.12 -2.67 9.70 22.27 0.22 -2.45 16 8 C -0.08 -1.92 4.37 -19.87 -0.09 -2.01 16 9 C -0.09 -1.80 5.83 29.10 0.17 -1.63 16 10 C 0.51 15.11 7.82 87.66 0.69 15.80 16 11 O -0.59 -23.89 16.03 -3.04 -0.05 -23.93 16 12 N -0.71 -20.87 5.00 -463.06 -2.32 -23.19 16 13 C 0.16 6.35 4.49 86.38 0.39 6.73 16 14 C 0.03 1.09 0.50 -52.93 -0.03 1.07 16 15 C -0.14 -5.17 7.53 71.98 0.54 -4.63 16 16 C -0.15 -5.33 7.52 71.98 0.54 -4.79 16 17 C -0.52 -28.85 8.62 25.60 0.22 -28.63 16 18 H 0.02 1.51 7.99 -2.91 -0.02 1.48 16 19 C 0.01 0.84 5.32 84.65 0.45 1.29 16 20 N -0.95 -59.05 13.96 21.45 0.30 -58.75 16 21 Si 0.95 42.41 22.79 68.60 1.56 43.98 16 22 H -0.28 -12.40 7.10 99.48 0.71 -11.70 16 23 H -0.32 -14.62 7.11 99.48 0.71 -13.91 16 24 H -0.20 -7.46 4.65 99.48 0.46 -7.00 16 25 C -0.12 -2.65 9.70 22.27 0.22 -2.43 16 26 C -0.13 -2.67 9.70 22.27 0.22 -2.45 16 27 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.78 8.14 -2.38 -0.02 0.77 16 34 H 0.07 1.03 8.08 -2.39 -0.02 1.01 16 35 H 0.07 1.03 8.09 -2.39 -0.02 1.01 16 36 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 37 H 0.13 2.53 8.06 -2.91 -0.02 2.50 16 38 H 0.13 1.75 8.09 -2.38 -0.02 1.74 16 39 H 0.13 1.74 8.09 -2.39 -0.02 1.72 16 40 H 0.41 9.10 6.26 -92.70 -0.58 8.52 16 41 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.07 1.93 7.13 -2.39 -0.02 1.91 16 44 H 0.04 1.78 4.30 -2.38 -0.01 1.77 16 45 H 0.04 1.50 8.12 -2.38 -0.02 1.48 16 46 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.03 1.33 2.25 -2.39 -0.01 1.33 16 48 H 0.08 2.10 6.86 -2.38 -0.02 2.08 16 49 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 50 H 0.13 2.51 8.06 -2.91 -0.02 2.48 16 51 H 0.13 2.23 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -74.13 396.19 4.43 -69.70 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 0.07 Total: 24.71 kcal Atomic # 6 Polarization: -37.38 SS G_CDS: 4.86 Total: -32.52 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -2.02 Total: -81.93 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.05 Total: -23.93 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 1.56 Total: 43.98 kcal Total: -74.13 4.43 -69.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457983391.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.757 kcal (2) G-P(sol) polarization free energy of solvation -74.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds