Wall clock time and date at job start Tue Mar 31 2020 11:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.52998 * 109.47282 * 299.99654 * 6 5 4 8 8 C 1.53003 * 109.47218 * 59.99579 * 6 5 4 9 9 C 1.52999 * 109.47331 * 179.97438 * 6 5 4 10 10 C 1.50702 * 109.47525 * 179.97438 * 9 6 5 11 11 O 1.21283 * 119.99478 * 359.97438 * 10 9 6 12 12 N 1.34773 * 120.00430 * 180.02562 * 10 9 6 13 13 C 1.46497 * 119.99899 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.46707 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.46897 * 299.99077 * 14 13 12 16 16 C 1.52995 * 109.47497 * 59.99336 * 14 13 12 17 17 C 1.50707 * 109.46911 * 179.97438 * 14 13 12 18 18 H 1.08002 * 119.99770 * 359.97438 * 17 14 13 19 19 C 1.37871 * 119.99748 * 179.97438 * 17 14 13 20 20 N 1.31514 * 120.00481 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 119.99745 * 179.97438 * 19 17 14 22 22 H 1.48494 * 109.47231 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47061 * 120.00455 * 21 19 17 24 24 H 1.48498 * 109.47430 * 239.99996 * 21 19 17 25 25 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 26 26 C 1.38234 * 120.00033 * 0.49775 * 25 5 4 27 27 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 28 28 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 29 29 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 30 30 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 32 32 H 1.08994 * 109.47122 * 59.99428 * 7 6 5 33 33 H 1.08990 * 109.47488 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.46885 * 299.99961 * 7 6 5 35 35 H 1.08995 * 109.47325 * 59.99840 * 8 6 5 36 36 H 1.09003 * 109.47092 * 180.02562 * 8 6 5 37 37 H 1.09001 * 109.46873 * 299.99885 * 8 6 5 38 38 H 1.09001 * 109.47089 * 300.00304 * 9 6 5 39 39 H 1.09001 * 109.47054 * 59.99906 * 9 6 5 40 40 H 0.97000 * 119.99523 * 359.97438 * 12 10 9 41 41 H 1.09003 * 109.46928 * 299.98900 * 13 12 10 42 42 H 1.08993 * 109.47638 * 59.99282 * 13 12 10 43 43 H 1.09003 * 109.47008 * 60.00514 * 15 14 13 44 44 H 1.09001 * 109.47349 * 180.02562 * 15 14 13 45 45 H 1.09001 * 109.47429 * 300.00542 * 15 14 13 46 46 H 1.09001 * 109.46677 * 60.00306 * 16 14 13 47 47 H 1.09002 * 109.47068 * 179.97438 * 16 14 13 48 48 H 1.08990 * 109.47108 * 300.00139 * 16 14 13 49 49 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 50 50 H 1.07999 * 119.99934 * 180.25938 * 25 5 4 51 51 H 1.08001 * 120.00294 * 179.76453 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2840 0.7236 -1.2599 8 6 6.2934 0.7188 1.2385 9 6 6.2887 -1.4425 -0.0142 10 6 7.7957 -1.4426 -0.0206 11 8 8.4021 -0.3922 -0.0222 12 7 8.4696 -2.6097 -0.0255 13 6 9.9345 -2.6097 -0.0311 14 6 10.4445 -4.0523 -0.0367 15 6 9.9394 -4.7765 1.2129 16 6 9.9296 -4.7705 -1.2856 17 6 11.9515 -4.0522 -0.0431 18 1 12.4915 -3.1169 -0.0436 19 6 12.6408 -5.2463 -0.0482 20 7 11.9833 -6.3852 -0.0481 21 14 14.5088 -5.2463 -0.0569 22 1 15.0038 -3.8463 -0.0562 23 1 15.0094 -5.9484 1.1522 24 1 14.9982 -5.9443 -1.2728 25 6 3.5805 -1.1972 0.0010 26 6 2.1982 -1.1972 0.0009 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6582 2.1324 -0.0004 31 1 4.1205 2.1325 0.0001 32 1 5.9206 1.7511 -1.2566 33 1 7.3739 0.7232 -1.2643 34 1 5.9173 0.2114 -2.1495 35 1 5.9335 0.2034 2.1289 36 1 7.3835 0.7192 1.2342 37 1 5.9301 1.7465 1.2418 38 1 5.9287 -1.9577 0.8763 39 1 5.9220 -1.9550 -0.9036 40 1 7.9845 -3.4498 -0.0246 41 1 10.2944 -2.0942 -0.9216 42 1 10.3013 -2.0976 0.8583 43 1 8.8493 -4.7765 1.2171 44 1 10.3030 -5.8040 1.2092 45 1 10.3061 -4.2648 2.1027 46 1 10.2895 -4.2545 -2.1757 47 1 10.2933 -5.7980 -1.2897 48 1 8.8397 -4.7705 -1.2813 49 1 12.4683 -7.2252 -0.0521 50 1 4.1205 -2.1325 0.0013 51 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457984492.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:41 Heat of formation + Delta-G solvation = -36.570845 kcal Electronic energy + Delta-G solvation = -26849.733866 eV Core-core repulsion = 23327.061409 eV Total energy + Delta-G solvation = -3522.672456 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.43946 -39.14224 -36.83716 -35.71750 -33.30038 -31.89380 -31.30448 -30.89353 -28.29642 -27.09108 -26.80060 -25.73784 -25.52158 -24.65881 -22.60741 -22.06372 -20.29792 -19.22026 -18.66496 -17.20068 -16.12743 -15.74296 -15.37217 -15.22131 -15.14445 -14.78263 -14.57417 -14.18941 -13.93211 -13.76612 -13.56603 -13.48949 -13.03261 -12.91412 -12.56606 -12.45550 -12.19685 -12.14002 -11.89628 -11.71341 -11.54629 -11.40818 -11.20939 -11.16336 -10.86557 -10.83413 -10.77742 -10.66670 -10.53670 -10.37971 -10.20530 -9.63898 -9.41108 -9.07079 -9.02883 -8.77747 -8.57191 -8.44274 -8.28111 -6.03139 -4.13083 1.23069 1.29399 3.06770 3.26299 3.35025 3.39447 3.63219 3.74796 4.39262 4.53548 4.63561 4.77488 4.85686 4.90023 5.02167 5.14233 5.23598 5.23703 5.33047 5.35095 5.41466 5.56112 5.58071 5.59391 5.69656 5.84925 5.91035 5.94983 6.03973 6.13474 6.13752 6.24172 6.29238 6.32804 6.45901 6.50220 6.54079 6.55035 6.61649 6.80164 6.81438 6.90641 6.93180 7.00982 7.08875 7.35282 7.54648 7.68734 8.00077 8.06877 8.15954 8.37905 8.74531 8.88242 9.52860 10.98264 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.029605 B = 0.002402 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.543415 B =11656.534291 C =12224.488129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.120 4.120 4 C -0.110 4.110 5 C -0.068 4.068 6 C -0.003 4.003 7 C -0.149 4.149 8 C -0.149 4.149 9 C -0.137 4.137 10 C 0.506 3.494 11 O -0.545 6.545 12 N -0.717 5.717 13 C 0.132 3.868 14 C 0.055 3.945 15 C -0.131 4.131 16 C -0.131 4.131 17 C -0.504 4.504 18 H 0.058 0.942 19 C 0.065 3.935 20 N -0.886 5.886 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.121 4.121 26 C -0.118 4.118 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.092 0.908 37 H 0.049 0.951 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.397 0.603 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.006 0.994 44 H 0.085 0.915 45 H 0.026 0.974 46 H 0.026 0.974 47 H 0.085 0.915 48 H 0.006 0.994 49 H 0.259 0.741 50 H 0.126 0.874 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.661 10.003 0.082 22.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.099 4.099 3 C -0.138 4.138 4 C -0.128 4.128 5 C -0.068 4.068 6 C -0.004 4.004 7 C -0.206 4.206 8 C -0.206 4.206 9 C -0.177 4.177 10 C 0.292 3.708 11 O -0.424 6.424 12 N -0.368 5.368 13 C 0.010 3.990 14 C 0.054 3.946 15 C -0.188 4.188 16 C -0.188 4.188 17 C -0.543 4.543 18 H 0.076 0.924 19 C -0.136 4.136 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.139 4.139 26 C -0.136 4.136 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.069 0.931 33 H 0.110 0.890 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.110 0.890 37 H 0.069 0.931 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.232 0.768 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.025 0.975 44 H 0.104 0.896 45 H 0.045 0.955 46 H 0.045 0.955 47 H 0.104 0.896 48 H 0.025 0.975 49 H 0.069 0.931 50 H 0.144 0.856 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -20.161 10.540 0.080 22.750 hybrid contribution 0.672 -0.577 -0.009 0.886 sum -19.489 9.963 0.071 21.888 Atomic orbital electron populations 1.20766 0.91494 1.02552 1.02117 1.19888 0.95884 0.93333 1.00771 1.20982 0.94131 0.97361 1.01292 1.20957 0.93857 0.97787 1.00212 1.19937 0.95114 0.93150 0.98562 1.19166 0.89380 0.94178 0.97644 1.22120 1.04348 0.98994 0.95131 1.22123 1.04307 0.99025 0.95143 1.21868 0.93400 0.98419 1.04013 1.20469 0.89615 0.84166 0.76554 1.90530 1.70497 1.30924 1.50466 1.46360 1.09196 1.07880 1.73323 1.21691 0.76485 1.00474 1.00395 1.18364 0.95426 0.87989 0.92796 1.21828 0.95180 1.04254 0.97575 1.21826 0.95167 1.04251 0.97591 1.21024 0.89998 0.92637 1.50616 0.92414 1.24887 0.98321 0.95554 0.94845 1.69810 1.34757 0.97177 1.50725 0.86523 0.85739 0.78147 0.77521 1.19765 1.21077 1.21072 1.21216 0.94077 0.98048 1.00571 1.21018 0.94200 0.97397 1.00977 0.91401 0.91698 0.91771 0.86398 0.86143 0.93140 0.88967 0.93502 0.93492 0.88982 0.93143 0.89023 0.89032 0.76808 0.92791 0.92789 0.97501 0.89622 0.95475 0.95475 0.89624 0.97500 0.93073 0.85585 0.86276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.01 36.01 0.36 -0.39 16 2 C -0.10 -0.91 5.88 -104.62 -0.62 -1.53 16 3 C -0.12 -1.14 9.70 -39.58 -0.38 -1.52 16 4 C -0.11 -1.15 8.71 -39.58 -0.34 -1.50 16 5 C -0.07 -0.75 4.76 -104.63 -0.50 -1.25 16 6 C 0.00 -0.04 0.60 -155.66 -0.09 -0.13 16 7 C -0.15 -1.89 7.99 37.16 0.30 -1.59 16 8 C -0.15 -1.89 7.99 37.16 0.30 -1.59 16 9 C -0.14 -1.66 3.43 -27.88 -0.10 -1.76 16 10 C 0.51 8.11 7.24 -10.99 -0.08 8.03 16 11 O -0.54 -10.18 11.35 5.55 0.06 -10.12 16 12 N -0.72 -12.22 4.96 -60.29 -0.30 -12.51 16 13 C 0.13 2.74 4.50 -4.04 -0.02 2.72 16 14 C 0.05 1.25 0.50 -155.66 -0.08 1.18 16 15 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 16 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 17 C -0.50 -13.10 8.01 -34.44 -0.28 -13.37 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 19 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 20 N -0.89 -23.48 9.35 55.43 0.52 -22.96 16 21 Si 0.89 20.66 29.54 -169.99 -5.02 15.63 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 25 C -0.12 -1.26 8.98 -39.58 -0.36 -1.62 16 26 C -0.12 -1.13 9.70 -39.58 -0.38 -1.51 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 29 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 30 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 31 H 0.12 1.15 7.10 -52.49 -0.37 0.77 16 32 H 0.05 0.58 7.39 -51.93 -0.38 0.19 16 33 H 0.09 1.40 5.51 -51.93 -0.29 1.11 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 1.39 5.51 -51.93 -0.29 1.11 16 37 H 0.05 0.57 7.39 -51.93 -0.38 0.19 16 38 H 0.09 0.99 7.50 -51.93 -0.39 0.60 16 39 H 0.09 0.99 7.52 -51.93 -0.39 0.60 16 40 H 0.40 6.13 6.16 -40.82 -0.25 5.88 16 41 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 44 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 48 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 49 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 50 H 0.13 1.15 5.90 -52.49 -0.31 0.85 16 51 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 387.01 15.07 5.83 5.83 Total: -1.00 -27.75 387.01 -9.25 -37.00 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -8.58 Total: 6.57 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -1.76 Total: -19.45 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 0.22 Total: -35.47 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.06 Total: -10.12 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -27.75 -9.25 -37.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457984492.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.433 kcal (2) G-P(sol) polarization free energy of solvation -27.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds