Wall clock time and date at job start Tue Mar 31 2020 11:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.52998 * 109.47282 * 299.99654 * 6 5 4 8 8 C 1.53003 * 109.47218 * 59.99579 * 6 5 4 9 9 C 1.52999 * 109.47331 * 179.97438 * 6 5 4 10 10 C 1.50702 * 109.47525 * 179.97438 * 9 6 5 11 11 O 1.21283 * 119.99478 * 359.97438 * 10 9 6 12 12 N 1.34773 * 120.00430 * 180.02562 * 10 9 6 13 13 C 1.46497 * 119.99899 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.46707 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.46897 * 299.99077 * 14 13 12 16 16 C 1.52995 * 109.47497 * 59.99336 * 14 13 12 17 17 C 1.50707 * 109.46911 * 179.97438 * 14 13 12 18 18 H 1.08002 * 119.99770 * 359.97438 * 17 14 13 19 19 C 1.37871 * 119.99748 * 179.97438 * 17 14 13 20 20 N 1.31514 * 120.00481 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 119.99745 * 179.97438 * 19 17 14 22 22 H 1.48494 * 109.47231 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47061 * 120.00455 * 21 19 17 24 24 H 1.48498 * 109.47430 * 239.99996 * 21 19 17 25 25 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 26 26 C 1.38234 * 120.00033 * 0.49775 * 25 5 4 27 27 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 28 28 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 29 29 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 30 30 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 32 32 H 1.08994 * 109.47122 * 59.99428 * 7 6 5 33 33 H 1.08990 * 109.47488 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.46885 * 299.99961 * 7 6 5 35 35 H 1.08995 * 109.47325 * 59.99840 * 8 6 5 36 36 H 1.09003 * 109.47092 * 180.02562 * 8 6 5 37 37 H 1.09001 * 109.46873 * 299.99885 * 8 6 5 38 38 H 1.09001 * 109.47089 * 300.00304 * 9 6 5 39 39 H 1.09001 * 109.47054 * 59.99906 * 9 6 5 40 40 H 0.97000 * 119.99523 * 359.97438 * 12 10 9 41 41 H 1.09003 * 109.46928 * 299.98900 * 13 12 10 42 42 H 1.08993 * 109.47638 * 59.99282 * 13 12 10 43 43 H 1.09003 * 109.47008 * 60.00514 * 15 14 13 44 44 H 1.09001 * 109.47349 * 180.02562 * 15 14 13 45 45 H 1.09001 * 109.47429 * 300.00542 * 15 14 13 46 46 H 1.09001 * 109.46677 * 60.00306 * 16 14 13 47 47 H 1.09002 * 109.47068 * 179.97438 * 16 14 13 48 48 H 1.08990 * 109.47108 * 300.00139 * 16 14 13 49 49 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 50 50 H 1.07999 * 119.99934 * 180.25938 * 25 5 4 51 51 H 1.08001 * 120.00294 * 179.76453 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2840 0.7236 -1.2599 8 6 6.2934 0.7188 1.2385 9 6 6.2887 -1.4425 -0.0142 10 6 7.7957 -1.4426 -0.0206 11 8 8.4021 -0.3922 -0.0222 12 7 8.4696 -2.6097 -0.0255 13 6 9.9345 -2.6097 -0.0311 14 6 10.4445 -4.0523 -0.0367 15 6 9.9394 -4.7765 1.2129 16 6 9.9296 -4.7705 -1.2856 17 6 11.9515 -4.0522 -0.0431 18 1 12.4915 -3.1169 -0.0436 19 6 12.6408 -5.2463 -0.0482 20 7 11.9833 -6.3852 -0.0481 21 14 14.5088 -5.2463 -0.0569 22 1 15.0038 -3.8463 -0.0562 23 1 15.0094 -5.9484 1.1522 24 1 14.9982 -5.9443 -1.2728 25 6 3.5805 -1.1972 0.0010 26 6 2.1982 -1.1972 0.0009 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6582 2.1324 -0.0004 31 1 4.1205 2.1325 0.0001 32 1 5.9206 1.7511 -1.2566 33 1 7.3739 0.7232 -1.2643 34 1 5.9173 0.2114 -2.1495 35 1 5.9335 0.2034 2.1289 36 1 7.3835 0.7192 1.2342 37 1 5.9301 1.7465 1.2418 38 1 5.9287 -1.9577 0.8763 39 1 5.9220 -1.9550 -0.9036 40 1 7.9845 -3.4498 -0.0246 41 1 10.2944 -2.0942 -0.9216 42 1 10.3013 -2.0976 0.8583 43 1 8.8493 -4.7765 1.2171 44 1 10.3030 -5.8040 1.2092 45 1 10.3061 -4.2648 2.1027 46 1 10.2895 -4.2545 -2.1757 47 1 10.2933 -5.7980 -1.2897 48 1 8.8397 -4.7705 -1.2813 49 1 12.4683 -7.2252 -0.0521 50 1 4.1205 -2.1325 0.0013 51 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457984492.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:40 Heat of formation + Delta-G solvation = -48.728154 kcal Electronic energy + Delta-G solvation = -26850.261046 eV Core-core repulsion = 23327.061409 eV Total energy + Delta-G solvation = -3523.199637 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.46854 -40.19900 -38.33528 -36.87044 -34.94606 -32.83831 -32.56703 -31.94110 -29.44259 -28.10461 -27.55035 -27.49518 -27.36487 -26.30482 -23.43630 -22.83752 -21.54642 -20.61694 -20.02855 -18.39078 -17.72414 -17.06431 -16.50586 -16.48765 -16.43109 -15.92781 -15.70369 -15.19062 -15.09323 -14.74506 -14.67590 -14.48389 -14.34579 -14.25372 -14.04634 -13.55353 -13.27945 -13.08469 -13.02124 -12.95774 -12.77072 -12.71414 -12.62211 -12.55433 -12.35686 -12.17663 -12.13504 -12.12787 -11.80049 -11.63905 -11.45834 -11.39736 -11.19295 -10.70416 -10.39474 -10.37906 -9.81472 -9.74578 -9.29334 -8.02194 -6.17582 0.49999 0.57674 1.40485 1.44882 1.54035 1.79385 2.36825 2.52725 2.90516 3.21279 3.62416 3.77056 4.06496 4.07031 4.13516 4.19259 4.23723 4.37147 4.50157 4.54273 4.59210 4.60481 4.69016 4.74133 4.74636 4.86228 4.87876 4.89094 4.99776 5.03214 5.05896 5.07580 5.11061 5.13043 5.19551 5.21341 5.26708 5.32910 5.37162 5.47563 5.49219 5.63243 5.67930 5.68485 5.75747 5.78131 5.81938 6.16716 6.20605 6.23489 6.44617 6.77167 6.87263 7.45156 7.50105 8.96689 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.029605 B = 0.002402 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.543415 B =11656.534291 C =12224.488129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.104 4.104 3 C -0.127 4.127 4 C -0.121 4.121 5 C -0.080 4.080 6 C 0.002 3.998 7 C -0.145 4.145 8 C -0.145 4.145 9 C -0.128 4.128 10 C 0.504 3.496 11 O -0.572 6.572 12 N -0.714 5.714 13 C 0.150 3.850 14 C 0.050 3.950 15 C -0.120 4.120 16 C -0.120 4.120 17 C -0.526 4.526 18 H 0.043 0.957 19 C 0.027 3.973 20 N -0.899 5.899 21 Si 0.944 3.056 22 H -0.276 1.276 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.130 4.130 26 C -0.126 4.126 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.135 0.865 31 H 0.123 0.877 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.407 0.593 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.038 0.962 44 H 0.061 0.939 45 H 0.017 0.983 46 H 0.017 0.983 47 H 0.061 0.939 48 H 0.038 0.962 49 H 0.260 0.740 50 H 0.138 0.862 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.174 9.866 0.096 25.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.104 4.104 3 C -0.145 4.145 4 C -0.139 4.139 5 C -0.080 4.080 6 C 0.001 3.999 7 C -0.202 4.202 8 C -0.202 4.202 9 C -0.168 4.168 10 C 0.292 3.708 11 O -0.453 6.453 12 N -0.366 5.366 13 C 0.026 3.974 14 C 0.049 3.951 15 C -0.178 4.178 16 C -0.178 4.178 17 C -0.564 4.564 18 H 0.061 0.939 19 C -0.173 4.173 20 N -0.538 5.538 21 Si 0.771 3.229 22 H -0.201 1.201 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.148 4.148 26 C -0.144 4.144 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.153 0.847 31 H 0.141 0.859 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.244 0.756 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.080 0.920 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.080 0.920 48 H 0.057 0.943 49 H 0.069 0.931 50 H 0.156 0.844 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -22.696 10.398 0.094 24.965 hybrid contribution 1.400 -0.470 -0.014 1.477 sum -21.297 9.928 0.080 23.497 Atomic orbital electron populations 1.20812 0.89735 1.03444 1.02855 1.20253 0.97329 0.93151 0.99648 1.21238 0.93907 0.98414 1.00974 1.21096 0.94517 0.97801 1.00467 1.19821 0.94111 0.93902 1.00168 1.19072 0.90363 0.93764 0.96678 1.22041 1.02419 0.99893 0.95874 1.22045 1.02382 0.99920 0.95884 1.21901 0.89800 0.99129 1.05961 1.21182 0.91255 0.83141 0.75224 1.90547 1.71557 1.31940 1.51273 1.46195 1.07495 1.08958 1.73925 1.21194 0.78897 0.98632 0.98694 1.18365 0.93990 0.89282 0.93435 1.21667 0.97128 1.02300 0.96736 1.21665 0.97111 1.02296 0.96754 1.21306 0.92052 0.92161 1.50918 0.93874 1.25454 1.01577 0.95446 0.94828 1.69911 1.35706 0.97315 1.50855 0.85726 0.81904 0.77781 0.77502 1.20068 1.20757 1.20751 1.21405 0.94674 0.98163 1.00512 1.21296 0.94107 0.98383 1.00623 0.90637 0.90849 0.90920 0.84747 0.85878 0.92300 0.91740 0.93080 0.93062 0.91753 0.92306 0.86935 0.86953 0.75585 0.94572 0.94562 0.94281 0.92006 0.96413 0.96417 0.92007 0.94284 0.93073 0.84441 0.84540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 71.24 0.71 -0.45 16 2 C -0.10 -1.65 5.88 -19.86 -0.12 -1.76 16 3 C -0.13 -2.13 9.70 22.27 0.22 -1.92 16 4 C -0.12 -2.31 8.71 22.27 0.19 -2.12 16 5 C -0.08 -1.62 4.76 -19.87 -0.09 -1.71 16 6 C 0.00 0.04 0.60 -52.93 -0.03 0.01 16 7 C -0.15 -3.60 7.99 71.98 0.58 -3.02 16 8 C -0.15 -3.59 7.99 71.98 0.57 -3.02 16 9 C -0.13 -2.84 3.43 29.85 0.10 -2.74 16 10 C 0.50 15.72 7.24 87.66 0.63 16.35 16 11 O -0.57 -21.69 11.35 -3.04 -0.03 -21.72 16 12 N -0.71 -23.50 4.96 -463.06 -2.30 -25.80 16 13 C 0.15 6.27 4.50 86.38 0.39 6.65 16 14 C 0.05 2.28 0.50 -52.93 -0.03 2.26 16 15 C -0.12 -5.29 8.08 71.98 0.58 -4.71 16 16 C -0.12 -5.29 8.08 71.98 0.58 -4.71 16 17 C -0.53 -27.77 8.01 25.60 0.21 -27.56 16 18 H 0.04 2.34 7.74 -2.91 -0.02 2.32 16 19 C 0.03 1.40 5.15 84.65 0.44 1.84 16 20 N -0.90 -47.84 9.35 21.45 0.20 -47.64 16 21 Si 0.94 42.71 29.54 68.60 2.03 44.74 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 25 C -0.13 -2.35 8.98 22.27 0.20 -2.15 16 26 C -0.13 -2.07 9.70 22.27 0.22 -1.85 16 27 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 0.65 8.09 -2.39 -0.02 0.63 16 29 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 30 H 0.13 1.71 8.06 -2.91 -0.02 1.68 16 31 H 0.12 2.18 7.10 -2.91 -0.02 2.16 16 32 H 0.06 1.31 7.39 -2.39 -0.02 1.29 16 33 H 0.06 1.98 5.51 -2.39 -0.01 1.97 16 34 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.06 1.97 5.51 -2.39 -0.01 1.96 16 37 H 0.06 1.31 7.39 -2.39 -0.02 1.29 16 38 H 0.11 2.07 7.50 -2.39 -0.02 2.05 16 39 H 0.11 2.07 7.52 -2.39 -0.02 2.05 16 40 H 0.41 11.59 6.16 -92.71 -0.57 11.02 16 41 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.04 1.41 6.86 -2.39 -0.02 1.40 16 44 H 0.06 3.03 6.07 -2.39 -0.01 3.02 16 45 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.06 3.03 6.07 -2.39 -0.01 3.02 16 48 H 0.04 1.41 6.86 -2.39 -0.02 1.40 16 49 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 50 H 0.14 2.06 5.90 -2.91 -0.02 2.04 16 51 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -60.28 387.01 5.58 -54.70 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: 0.34 Total: 26.33 kcal Atomic # 6 Polarization: -35.97 SS G_CDS: 5.35 Total: -30.62 kcal Atomic # 7 Polarization: -71.34 SS G_CDS: -2.10 Total: -73.43 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.03 Total: -21.72 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -60.28 5.58 -54.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457984492.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.973 kcal (2) G-P(sol) polarization free energy of solvation -60.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds