Wall clock time and date at job start Tue Mar 31 2020 11:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.52997 * 109.47229 * 89.99423 * 6 5 4 8 8 C 1.52998 * 109.47490 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47794 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47535 * 180.02562 * 9 8 7 11 11 O 1.21290 * 119.99684 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00024 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99849 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47057 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47504 * 300.00052 * 14 13 12 16 16 C 1.53001 * 109.47367 * 59.99752 * 14 13 12 17 17 C 1.50698 * 109.47232 * 180.02562 * 14 13 12 18 18 H 1.08001 * 119.99746 * 359.97438 * 17 14 13 19 19 C 1.37874 * 120.00031 * 180.02562 * 17 14 13 20 20 N 1.31515 * 120.00417 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 120.00094 * 179.97438 * 19 17 14 22 22 H 1.48503 * 109.47123 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47500 * 119.99972 * 21 19 17 24 24 H 1.48498 * 109.47278 * 240.00115 * 21 19 17 25 25 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 26 26 C 1.38234 * 120.00033 * 0.49775 * 25 5 4 27 27 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 28 28 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 29 29 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 30 30 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 33 33 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 34 34 H 1.09004 * 109.47454 * 300.00132 * 7 6 5 35 35 H 1.09006 * 109.47180 * 60.00059 * 7 6 5 36 36 H 1.08999 * 109.47245 * 300.00709 * 8 7 6 37 37 H 1.09006 * 109.46881 * 59.99852 * 8 7 6 38 38 H 1.09000 * 109.46697 * 299.99938 * 9 8 7 39 39 H 1.08993 * 109.47016 * 59.99991 * 9 8 7 40 40 H 0.97001 * 120.00111 * 359.97438 * 12 10 9 41 41 H 1.09000 * 109.47064 * 299.99526 * 13 12 10 42 42 H 1.09001 * 109.47287 * 60.00136 * 13 12 10 43 43 H 1.09004 * 109.46755 * 59.99515 * 15 14 13 44 44 H 1.08997 * 109.47812 * 179.97438 * 15 14 13 45 45 H 1.09006 * 109.46787 * 300.00100 * 15 14 13 46 46 H 1.09004 * 109.46643 * 59.99737 * 16 14 13 47 47 H 1.09000 * 109.47371 * 179.97438 * 16 14 13 48 48 H 1.08995 * 109.47264 * 300.00716 * 16 14 13 49 49 H 0.97003 * 120.00550 * 179.97438 * 20 19 17 50 50 H 1.07999 * 119.99934 * 180.25938 * 25 5 4 51 51 H 1.08001 * 120.00294 * 179.76453 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2941 -0.0027 1.4304 8 6 7.8241 -0.0021 1.4247 9 6 8.3397 -0.0055 2.8652 10 6 9.8466 -0.0042 2.8595 11 8 10.4491 -0.0015 1.8068 12 7 10.5249 -0.0072 4.0241 13 6 11.9899 -0.0066 4.0185 14 6 12.5054 -0.0098 5.4590 15 6 11.9977 1.2375 6.1852 16 6 11.9987 -1.2609 6.1793 17 6 14.0124 -0.0085 5.4533 18 1 14.5488 -0.0061 4.5159 19 6 14.7063 -0.0115 6.6447 20 7 14.0531 -0.0149 7.7862 21 14 16.5743 -0.0106 6.6376 22 1 17.0640 -0.0071 5.2357 23 1 17.0714 1.2002 7.3391 24 1 17.0725 -1.2248 7.3324 25 6 3.5805 -1.1972 0.0010 26 6 2.1982 -1.1972 0.0009 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6582 2.1324 -0.0004 31 1 4.1205 2.1325 0.0001 32 1 6.1400 -0.8891 -0.5270 33 1 6.1401 0.8909 -0.5236 34 1 5.9328 0.8863 1.9473 35 1 5.9327 -0.8937 1.9440 36 1 8.1859 -0.8908 0.9076 37 1 8.1851 0.8891 0.9112 38 1 7.9779 0.8831 3.3825 39 1 7.9787 -0.8968 3.3782 40 1 10.0431 -0.0098 4.8659 41 1 12.3517 -0.8950 3.5008 42 1 12.3510 0.8850 3.5058 43 1 10.9076 1.2370 6.1893 44 1 12.3645 1.2350 7.2116 45 1 12.3587 2.1289 5.6721 46 1 12.3604 -2.1496 5.6619 47 1 12.3663 -1.2635 7.2054 48 1 10.9087 -1.2615 6.1833 49 1 14.5413 -0.0174 8.6244 50 1 4.1205 -2.1325 0.0013 51 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457990522.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:43 Heat of formation + Delta-G solvation = -69.838053 kcal Electronic energy + Delta-G solvation = -25176.437412 eV Core-core repulsion = 21652.322381 eV Total energy + Delta-G solvation = -3524.115031 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.76796 -40.31532 -38.20079 -36.63827 -34.96152 -34.07608 -32.73711 -31.76080 -31.00386 -28.12496 -27.56120 -27.36012 -26.46545 -24.51193 -23.56501 -22.29847 -21.40806 -21.17111 -20.57512 -18.29131 -17.59292 -17.02641 -16.97916 -16.63549 -16.39402 -16.35971 -15.90585 -15.54103 -14.99586 -14.76922 -14.59767 -14.56098 -14.23234 -14.10615 -13.97228 -13.66678 -13.61436 -13.18278 -13.10037 -12.95840 -12.86355 -12.68164 -12.57838 -12.43195 -12.25934 -12.14551 -12.14398 -11.99552 -11.75613 -11.63955 -11.48527 -11.39141 -11.26912 -10.79429 -10.64488 -10.40327 -9.90135 -9.78311 -9.30774 -8.02864 -6.18512 0.46714 0.54426 1.40434 1.44685 1.54027 1.76834 2.36961 2.52848 2.87710 3.20587 3.77969 3.91971 3.93443 4.06342 4.11435 4.18838 4.21192 4.36106 4.44199 4.51100 4.57176 4.60422 4.64536 4.70838 4.74384 4.82899 4.85076 4.85635 4.94622 4.96088 5.01825 5.04647 5.06231 5.12421 5.19600 5.19999 5.23824 5.35706 5.37813 5.38545 5.51204 5.57545 5.63595 5.67007 5.67312 5.75448 5.80632 6.15339 6.19051 6.21883 6.43537 6.73715 6.85830 7.39771 7.49250 8.96131 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.038573 B = 0.001639 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.726403 B =17081.406291 C =17300.229988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.105 4.105 3 C -0.130 4.130 4 C -0.126 4.126 5 C -0.095 4.095 6 C -0.080 4.080 7 C -0.101 4.101 8 C -0.098 4.098 9 C -0.131 4.131 10 C 0.498 3.502 11 O -0.598 6.598 12 N -0.714 5.714 13 C 0.148 3.852 14 C 0.047 3.953 15 C -0.119 4.119 16 C -0.119 4.119 17 C -0.528 4.528 18 H 0.042 0.958 19 C 0.028 3.972 20 N -0.899 5.899 21 Si 0.944 3.056 22 H -0.276 1.276 23 H -0.281 1.281 24 H -0.281 1.281 25 C -0.126 4.126 26 C -0.130 4.130 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.134 0.866 31 H 0.129 0.871 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.409 0.591 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.039 0.961 44 H 0.062 0.938 45 H 0.017 0.983 46 H 0.016 0.984 47 H 0.062 0.938 48 H 0.039 0.961 49 H 0.260 0.740 50 H 0.129 0.871 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.381 0.015 -11.501 29.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.105 4.105 3 C -0.148 4.148 4 C -0.144 4.144 5 C -0.095 4.095 6 C -0.117 4.117 7 C -0.139 4.139 8 C -0.136 4.136 9 C -0.171 4.171 10 C 0.287 3.713 11 O -0.480 6.480 12 N -0.366 5.366 13 C 0.024 3.976 14 C 0.047 3.953 15 C -0.177 4.177 16 C -0.177 4.177 17 C -0.567 4.567 18 H 0.061 0.939 19 C -0.171 4.171 20 N -0.537 5.537 21 Si 0.771 3.229 22 H -0.201 1.201 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.144 4.144 26 C -0.148 4.148 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.152 0.848 31 H 0.147 0.853 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.247 0.753 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.081 0.919 48 H 0.058 0.942 49 H 0.070 0.930 50 H 0.147 0.853 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -26.909 0.017 -12.027 29.474 hybrid contribution 1.451 -0.001 0.416 1.509 sum -25.459 0.016 -11.610 27.981 Atomic orbital electron populations 1.20818 0.89805 1.03453 1.02859 1.20255 0.97336 0.93205 0.99727 1.21289 0.94286 0.98325 1.00902 1.21267 0.94572 0.98061 1.00466 1.20041 0.95992 0.93456 0.99978 1.20591 0.90332 1.03174 0.97597 1.21485 0.93307 1.02997 0.96085 1.21276 0.95434 1.02315 0.94600 1.21731 0.88392 1.06444 1.00529 1.21591 0.91991 0.74817 0.82943 1.90646 1.72277 1.52339 1.32729 1.46214 1.07494 1.73755 1.09100 1.21208 0.79043 0.98564 0.98781 1.18398 0.94096 0.93645 0.89181 1.21656 0.97144 0.96636 1.02268 1.21655 0.97151 0.96634 1.02276 1.21299 0.91998 1.51159 0.92217 0.93949 1.25443 1.01632 0.94706 0.95359 1.69909 1.35758 1.50745 0.97324 0.85717 0.81801 0.77565 0.77778 1.20121 1.20663 1.20675 1.21267 0.94571 0.98061 1.00464 1.21291 0.94287 0.98324 1.00901 0.90625 0.90900 0.90901 0.84810 0.85278 0.90944 0.90947 0.91120 0.91109 0.92619 0.92614 0.86728 0.86716 0.75334 0.94733 0.94737 0.94246 0.91923 0.96428 0.96436 0.91916 0.94233 0.93014 0.85277 0.84808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.01 71.24 0.71 -0.31 16 2 C -0.11 -1.50 5.88 -19.86 -0.12 -1.62 16 3 C -0.13 -1.91 9.70 22.27 0.22 -1.70 16 4 C -0.13 -2.00 9.70 22.27 0.22 -1.78 16 5 C -0.09 -1.57 5.13 -19.87 -0.10 -1.67 16 6 C -0.08 -1.25 5.34 29.84 0.16 -1.09 16 7 C -0.10 -1.57 5.20 30.59 0.16 -1.42 16 8 C -0.10 -2.03 4.50 30.59 0.14 -1.90 16 9 C -0.13 -2.75 5.70 29.85 0.17 -2.58 16 10 C 0.50 16.26 7.83 87.66 0.69 16.94 16 11 O -0.60 -24.94 15.98 -3.06 -0.05 -24.99 16 12 N -0.71 -24.25 4.96 -463.05 -2.30 -26.54 16 13 C 0.15 6.38 4.50 86.38 0.39 6.77 16 14 C 0.05 2.20 0.50 -52.93 -0.03 2.18 16 15 C -0.12 -5.27 8.08 71.98 0.58 -4.69 16 16 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 17 C -0.53 -28.18 8.01 25.60 0.21 -27.98 16 18 H 0.04 2.33 7.74 -2.91 -0.02 2.30 16 19 C 0.03 1.50 5.15 84.65 0.44 1.93 16 20 N -0.90 -47.89 9.35 21.45 0.20 -47.69 16 21 Si 0.94 42.82 29.54 68.60 2.03 44.84 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 25 C -0.13 -2.00 9.70 22.27 0.22 -1.78 16 26 C -0.13 -1.91 9.70 22.27 0.22 -1.70 16 27 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.07 0.55 8.09 -2.39 -0.02 0.53 16 29 H 0.07 0.55 8.09 -2.39 -0.02 0.53 16 30 H 0.13 1.46 8.06 -2.91 -0.02 1.44 16 31 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 32 H 0.07 1.13 8.09 -2.39 -0.02 1.11 16 33 H 0.07 1.13 8.09 -2.39 -0.02 1.11 16 34 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 37 H 0.06 1.31 8.10 -2.38 -0.02 1.29 16 38 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.41 11.83 6.16 -92.71 -0.57 11.26 16 41 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.04 1.44 6.86 -2.39 -0.02 1.42 16 44 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 45 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 46 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 47 H 0.06 3.09 6.07 -2.39 -0.01 3.07 16 48 H 0.04 1.44 6.86 -2.39 -0.02 1.43 16 49 H 0.26 13.31 8.31 -92.71 -0.77 12.54 16 50 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 51 H 0.13 1.46 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -63.75 406.01 5.03 -58.72 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.31 Total: 22.75 kcal Atomic # 6 Polarization: -31.93 SS G_CDS: 4.84 Total: -27.09 kcal Atomic # 7 Polarization: -72.14 SS G_CDS: -2.10 Total: -74.23 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.05 Total: -24.99 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -63.75 5.03 -58.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457990522.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.119 kcal (2) G-P(sol) polarization free energy of solvation -63.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds