Wall clock time and date at job start Tue Mar 31 2020 11:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46905 * 2 1 4 4 C 1.38233 * 120.00365 * 89.99931 * 3 2 1 5 5 C 1.38237 * 120.00304 * 179.97438 * 4 3 2 6 6 C 1.38237 * 119.99869 * 359.95379 * 5 4 3 7 7 C 1.50690 * 120.00000 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47376 * 359.97438 * 7 6 5 9 9 C 1.53007 * 109.47195 * 120.00185 * 7 6 5 10 10 C 1.52999 * 109.47485 * 240.00012 * 7 6 5 11 11 C 1.50695 * 109.47512 * 175.00139 * 10 7 6 12 12 O 1.21279 * 119.99987 * 359.97438 * 11 10 7 13 13 N 1.34772 * 120.00003 * 179.72752 * 11 10 7 14 14 C 1.46508 * 120.00023 * 180.27502 * 13 11 10 15 15 C 1.52998 * 109.47105 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.47262 * 299.99886 * 15 14 13 17 17 C 1.53002 * 109.46996 * 59.99814 * 15 14 13 18 18 C 1.50698 * 109.47216 * 179.97438 * 15 14 13 19 19 H 1.08001 * 119.99562 * 357.00987 * 18 15 14 20 20 C 1.37871 * 120.00357 * 177.00401 * 18 15 14 21 21 N 1.31517 * 119.99961 * 5.54777 * 20 18 15 22 22 Si 1.86805 * 120.00328 * 185.54167 * 20 18 15 23 23 H 1.48503 * 109.46772 * 85.00158 * 22 20 18 24 24 H 1.48493 * 109.47160 * 205.00265 * 22 20 18 25 25 H 1.48502 * 109.46871 * 325.00478 * 22 20 18 26 26 C 1.38236 * 119.99778 * 0.27578 * 6 5 4 27 27 C 1.38235 * 120.00153 * 359.51549 * 26 6 5 28 28 H 1.09005 * 109.46530 * 60.00769 * 1 2 3 29 29 H 1.08999 * 109.47151 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47527 * 300.00578 * 1 2 3 31 31 H 1.09000 * 109.47527 * 239.99422 * 2 1 3 32 32 H 1.09000 * 109.46686 * 119.99677 * 2 1 3 33 33 H 1.08003 * 120.00086 * 359.97314 * 4 3 2 34 34 H 1.08000 * 119.99867 * 179.97438 * 5 4 3 35 35 H 1.08993 * 109.47058 * 59.99696 * 9 7 6 36 36 H 1.08999 * 109.46924 * 180.02562 * 9 7 6 37 37 H 1.08999 * 109.46934 * 299.99927 * 9 7 6 38 38 H 1.08998 * 109.47038 * 54.99725 * 10 7 6 39 39 H 1.09003 * 109.47056 * 295.00130 * 10 7 6 40 40 H 0.97003 * 120.00409 * 0.26968 * 13 11 10 41 41 H 1.08994 * 109.46959 * 299.99782 * 14 13 11 42 42 H 1.08999 * 109.46623 * 59.99944 * 14 13 11 43 43 H 1.09002 * 109.47375 * 53.93609 * 16 15 14 44 44 H 1.08999 * 109.47587 * 173.93439 * 16 15 14 45 45 H 1.09002 * 109.47096 * 293.93509 * 16 15 14 46 46 H 1.09004 * 109.47099 * 60.00019 * 17 15 14 47 47 H 1.09000 * 109.47041 * 179.97438 * 17 15 14 48 48 H 1.08995 * 109.47189 * 299.99897 * 17 15 14 49 49 H 0.97004 * 120.00219 * 179.97438 * 21 20 18 50 50 H 1.07999 * 120.00020 * 179.72754 * 26 6 5 51 51 H 1.08003 * 120.00149 * 180.25316 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7239 3.3757 1.1971 6 6 2.9557 4.0268 -0.0001 7 6 3.4591 5.4472 -0.0002 8 1 3.5792 5.7901 1.0275 9 6 4.8075 5.5104 -0.7205 10 6 2.4525 6.3450 -0.7224 11 6 2.8943 7.7818 -0.6162 12 8 3.9136 8.0604 -0.0210 13 7 2.1593 8.7567 -1.1869 14 6 2.5920 10.1530 -1.0889 15 6 1.5886 11.0502 -1.8164 16 6 1.5135 10.6418 -3.2889 17 6 0.2085 10.8975 -1.1737 18 6 2.0333 12.4865 -1.7149 19 1 2.9143 12.7399 -1.1440 20 6 1.3156 13.4770 -2.3511 21 7 0.1842 13.1848 -2.9546 22 14 1.9501 15.2340 -2.3557 23 1 2.9115 15.4100 -3.4737 24 1 0.8113 16.1710 -2.5299 25 1 2.6318 15.5174 -1.0672 26 6 2.7208 3.3767 -1.1972 27 6 2.2637 2.0721 -1.1972 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0823 1.5636 2.1325 34 1 2.9035 3.8850 2.1324 35 1 4.6869 5.1676 -1.7480 36 1 5.1717 6.5377 -0.7201 37 1 5.5246 4.8708 -0.2059 38 1 1.4703 6.2320 -0.2637 39 1 2.3981 6.0583 -1.7727 40 1 1.3439 8.5340 -1.6628 41 1 2.6459 10.4438 -0.0398 42 1 3.5750 10.2618 -1.5471 43 1 1.2969 9.5759 -3.3598 44 1 0.7230 11.2068 -3.7828 45 1 2.4672 10.8518 -3.7733 46 1 0.2620 11.1884 -0.1246 47 1 -0.5062 11.5370 -1.6917 48 1 -0.1133 9.8587 -1.2468 49 1 -0.3210 13.8818 -3.4019 50 1 2.8977 3.8868 -2.1326 51 1 2.0841 1.5628 -2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457992464.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:16 Heat of formation + Delta-G solvation = -49.032471 kcal Electronic energy + Delta-G solvation = -26195.538871 eV Core-core repulsion = 22672.326038 eV Total energy + Delta-G solvation = -3523.212833 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.08831 -39.16716 -36.61741 -35.63509 -33.26975 -33.13255 -31.07162 -30.93255 -29.00170 -27.85395 -25.73491 -25.52816 -24.84253 -24.20136 -22.96008 -21.84465 -20.42841 -19.59528 -18.73928 -17.17432 -16.18105 -15.93227 -15.68096 -15.32172 -15.12097 -14.91828 -14.58167 -14.18417 -14.00200 -13.71221 -13.52340 -13.30730 -13.24979 -12.92329 -12.88654 -12.72945 -12.20676 -12.10323 -11.94626 -11.63485 -11.54317 -11.35591 -11.18876 -11.15587 -11.10664 -10.87529 -10.78558 -10.70149 -10.65457 -10.37598 -10.21277 -9.62671 -9.48362 -9.18949 -9.04922 -8.79323 -8.62253 -8.43699 -8.28190 -6.02839 -4.11603 1.19026 1.27346 3.09271 3.28635 3.35110 3.38443 3.56915 3.80940 4.40068 4.49417 4.56153 4.74405 4.78851 4.87233 5.00979 5.06113 5.12132 5.22707 5.24225 5.30160 5.34965 5.37899 5.53267 5.57619 5.65083 5.66409 5.76047 5.84665 5.92986 5.94514 6.04061 6.16971 6.24543 6.28880 6.33628 6.45044 6.46913 6.51478 6.59827 6.79857 6.81588 6.88013 6.93320 7.01551 7.06583 7.35477 7.55429 7.69796 7.99157 8.07398 8.16295 8.38308 8.74510 8.89031 9.53783 10.99153 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.027093 B = 0.002170 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.231369 B =12902.379477 C =13397.350728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.091 4.091 4 C -0.117 4.117 5 C -0.113 4.113 6 C -0.075 4.075 7 C -0.034 4.034 8 H 0.085 0.915 9 C -0.148 4.148 10 C -0.135 4.135 11 C 0.504 3.496 12 O -0.551 6.551 13 N -0.718 5.718 14 C 0.132 3.868 15 C 0.055 3.945 16 C -0.129 4.129 17 C -0.130 4.130 18 C -0.507 4.507 19 H 0.057 0.943 20 C 0.066 3.934 21 N -0.885 5.885 22 Si 0.893 3.107 23 H -0.280 1.280 24 H -0.288 1.288 25 H -0.275 1.275 26 C -0.111 4.111 27 C -0.117 4.117 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.048 0.952 36 H 0.082 0.918 37 H 0.050 0.950 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.397 0.603 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.007 0.993 44 H 0.081 0.919 45 H 0.029 0.971 46 H 0.026 0.974 47 H 0.085 0.915 48 H 0.005 0.995 49 H 0.260 0.740 50 H 0.122 0.878 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.753 -24.237 3.673 24.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.091 4.091 4 C -0.135 4.135 5 C -0.131 4.131 6 C -0.075 4.075 7 C -0.053 4.053 8 H 0.104 0.896 9 C -0.205 4.205 10 C -0.175 4.175 11 C 0.290 3.710 12 O -0.430 6.430 13 N -0.369 5.369 14 C 0.009 3.991 15 C 0.054 3.946 16 C -0.186 4.186 17 C -0.188 4.188 18 C -0.545 4.545 19 H 0.075 0.925 20 C -0.135 4.135 21 N -0.524 5.524 22 Si 0.721 3.279 23 H -0.206 1.206 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.129 4.129 27 C -0.135 4.135 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.232 0.768 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.026 0.974 44 H 0.100 0.900 45 H 0.048 0.952 46 H 0.045 0.955 47 H 0.104 0.896 48 H 0.024 0.976 49 H 0.070 0.930 50 H 0.140 0.860 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.325 -23.912 3.987 24.278 hybrid contribution -0.162 0.904 -0.298 0.965 sum 1.163 -23.008 3.689 23.331 Atomic orbital electron populations 1.21753 0.94757 1.01586 1.02336 1.20527 0.96174 0.92817 1.02625 1.19863 0.99748 0.96224 0.93288 1.20982 1.00207 0.94911 0.97401 1.21091 0.99575 0.94771 0.97691 1.19951 0.98509 0.95923 0.93141 1.19862 0.94723 0.89410 1.01302 0.89647 1.21955 0.95563 1.03872 0.99111 1.21753 1.00557 0.92438 1.02737 1.20527 0.84072 0.87377 0.79035 1.90627 1.25112 1.84094 1.43167 1.46362 1.27191 1.08252 1.55066 1.21681 0.98860 0.78160 1.00361 1.18358 0.91080 0.93490 0.91624 1.21801 1.01667 0.96098 0.99065 1.21848 1.00498 0.97136 0.99313 1.20965 1.11276 0.90507 1.31771 0.92470 1.24884 0.94618 0.98789 0.95220 1.69827 1.13619 1.32997 1.35928 0.86598 0.78399 0.84407 0.78527 1.20635 1.21341 1.19980 1.21014 0.99429 0.94634 0.97824 1.20993 1.00169 0.94909 0.97398 0.92500 0.92522 0.92534 0.91203 0.91236 0.86371 0.86066 0.93266 0.89950 0.93058 0.89168 0.89161 0.76760 0.92826 0.92784 0.97449 0.90038 0.95218 0.95488 0.89607 0.97557 0.93021 0.86049 0.86340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.16 0.37 -0.56 16 2 C -0.08 -0.57 6.06 -27.88 -0.17 -0.74 16 3 C -0.09 -0.81 5.13 -104.62 -0.54 -1.35 16 4 C -0.12 -1.08 9.70 -39.58 -0.38 -1.46 16 5 C -0.11 -1.15 9.67 -39.58 -0.38 -1.53 16 6 C -0.08 -0.81 4.78 -104.63 -0.50 -1.31 16 7 C -0.03 -0.41 2.21 -91.77 -0.20 -0.61 16 8 H 0.09 1.11 7.69 -51.93 -0.40 0.71 16 9 C -0.15 -1.82 8.75 37.16 0.33 -1.50 16 10 C -0.13 -1.65 4.91 -27.89 -0.14 -1.78 16 11 C 0.50 8.33 7.55 -10.99 -0.08 8.24 16 12 O -0.55 -10.88 13.97 5.56 0.08 -10.80 16 13 N -0.72 -12.50 4.90 -60.29 -0.30 -12.79 16 14 C 0.13 2.78 4.50 -4.04 -0.02 2.77 16 15 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 16 C -0.13 -2.87 8.03 37.16 0.30 -2.58 16 17 C -0.13 -2.93 8.11 37.16 0.30 -2.62 16 18 C -0.51 -13.26 8.01 -34.44 -0.28 -13.53 16 19 H 0.06 1.52 7.75 -52.49 -0.41 1.11 16 20 C 0.07 1.74 5.13 -17.82 -0.09 1.65 16 21 N -0.89 -23.58 9.45 55.43 0.52 -23.06 16 22 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 26 C -0.11 -1.11 8.76 -39.58 -0.35 -1.45 16 27 C -0.12 -1.07 9.70 -39.58 -0.38 -1.45 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 32 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 33 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 34 H 0.12 1.11 7.95 -52.49 -0.42 0.69 16 35 H 0.05 0.54 7.40 -51.93 -0.38 0.16 16 36 H 0.08 1.23 5.95 -51.93 -0.31 0.92 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.09 0.96 7.56 -51.93 -0.39 0.57 16 40 H 0.40 6.26 6.16 -40.82 -0.25 6.01 16 41 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.01 0.13 6.71 -51.93 -0.35 -0.22 16 44 H 0.08 2.00 6.25 -51.93 -0.32 1.68 16 45 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.09 2.13 6.10 -51.93 -0.32 1.82 16 48 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 49 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 50 H 0.12 1.09 7.16 -52.49 -0.38 0.72 16 51 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 LS Contribution 398.01 15.07 6.00 6.00 Total: -1.00 -28.31 398.01 -9.92 -38.24 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -8.91 Total: 5.32 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -2.30 Total: -18.63 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.23 Total: -35.85 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.80 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -28.31 -9.92 -38.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457992464.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.797 kcal (2) G-P(sol) polarization free energy of solvation -28.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds