Wall clock time and date at job start Tue Mar 31 2020 11:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46905 * 2 1 4 4 C 1.38233 * 120.00365 * 89.99931 * 3 2 1 5 5 C 1.38237 * 120.00304 * 179.97438 * 4 3 2 6 6 C 1.38237 * 119.99869 * 359.95379 * 5 4 3 7 7 C 1.50690 * 120.00000 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47376 * 359.97438 * 7 6 5 9 9 C 1.53007 * 109.47195 * 120.00185 * 7 6 5 10 10 C 1.52999 * 109.47485 * 240.00012 * 7 6 5 11 11 C 1.50695 * 109.47512 * 175.00139 * 10 7 6 12 12 O 1.21279 * 119.99987 * 359.97438 * 11 10 7 13 13 N 1.34772 * 120.00003 * 179.72752 * 11 10 7 14 14 C 1.46508 * 120.00023 * 180.27502 * 13 11 10 15 15 C 1.52998 * 109.47105 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.47262 * 299.99886 * 15 14 13 17 17 C 1.53002 * 109.46996 * 59.99814 * 15 14 13 18 18 C 1.50698 * 109.47216 * 179.97438 * 15 14 13 19 19 H 1.08001 * 119.99562 * 357.00987 * 18 15 14 20 20 C 1.37871 * 120.00357 * 177.00401 * 18 15 14 21 21 N 1.31517 * 119.99961 * 5.54777 * 20 18 15 22 22 Si 1.86805 * 120.00328 * 185.54167 * 20 18 15 23 23 H 1.48503 * 109.46772 * 85.00158 * 22 20 18 24 24 H 1.48493 * 109.47160 * 205.00265 * 22 20 18 25 25 H 1.48502 * 109.46871 * 325.00478 * 22 20 18 26 26 C 1.38236 * 119.99778 * 0.27578 * 6 5 4 27 27 C 1.38235 * 120.00153 * 359.51549 * 26 6 5 28 28 H 1.09005 * 109.46530 * 60.00769 * 1 2 3 29 29 H 1.08999 * 109.47151 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47527 * 300.00578 * 1 2 3 31 31 H 1.09000 * 109.47527 * 239.99422 * 2 1 3 32 32 H 1.09000 * 109.46686 * 119.99677 * 2 1 3 33 33 H 1.08003 * 120.00086 * 359.97314 * 4 3 2 34 34 H 1.08000 * 119.99867 * 179.97438 * 5 4 3 35 35 H 1.08993 * 109.47058 * 59.99696 * 9 7 6 36 36 H 1.08999 * 109.46924 * 180.02562 * 9 7 6 37 37 H 1.08999 * 109.46934 * 299.99927 * 9 7 6 38 38 H 1.08998 * 109.47038 * 54.99725 * 10 7 6 39 39 H 1.09003 * 109.47056 * 295.00130 * 10 7 6 40 40 H 0.97003 * 120.00409 * 0.26968 * 13 11 10 41 41 H 1.08994 * 109.46959 * 299.99782 * 14 13 11 42 42 H 1.08999 * 109.46623 * 59.99944 * 14 13 11 43 43 H 1.09002 * 109.47375 * 53.93609 * 16 15 14 44 44 H 1.08999 * 109.47587 * 173.93439 * 16 15 14 45 45 H 1.09002 * 109.47096 * 293.93509 * 16 15 14 46 46 H 1.09004 * 109.47099 * 60.00019 * 17 15 14 47 47 H 1.09000 * 109.47041 * 179.97438 * 17 15 14 48 48 H 1.08995 * 109.47189 * 299.99897 * 17 15 14 49 49 H 0.97004 * 120.00219 * 179.97438 * 21 20 18 50 50 H 1.07999 * 120.00020 * 179.72754 * 26 6 5 51 51 H 1.08003 * 120.00149 * 180.25316 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7239 3.3757 1.1971 6 6 2.9557 4.0268 -0.0001 7 6 3.4591 5.4472 -0.0002 8 1 3.5792 5.7901 1.0275 9 6 4.8075 5.5104 -0.7205 10 6 2.4525 6.3450 -0.7224 11 6 2.8943 7.7818 -0.6162 12 8 3.9136 8.0604 -0.0210 13 7 2.1593 8.7567 -1.1869 14 6 2.5920 10.1530 -1.0889 15 6 1.5886 11.0502 -1.8164 16 6 1.5135 10.6418 -3.2889 17 6 0.2085 10.8975 -1.1737 18 6 2.0333 12.4865 -1.7149 19 1 2.9143 12.7399 -1.1440 20 6 1.3156 13.4770 -2.3511 21 7 0.1842 13.1848 -2.9546 22 14 1.9501 15.2340 -2.3557 23 1 2.9115 15.4100 -3.4737 24 1 0.8113 16.1710 -2.5299 25 1 2.6318 15.5174 -1.0672 26 6 2.7208 3.3767 -1.1972 27 6 2.2637 2.0721 -1.1972 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0823 1.5636 2.1325 34 1 2.9035 3.8850 2.1324 35 1 4.6869 5.1676 -1.7480 36 1 5.1717 6.5377 -0.7201 37 1 5.5246 4.8708 -0.2059 38 1 1.4703 6.2320 -0.2637 39 1 2.3981 6.0583 -1.7727 40 1 1.3439 8.5340 -1.6628 41 1 2.6459 10.4438 -0.0398 42 1 3.5750 10.2618 -1.5471 43 1 1.2969 9.5759 -3.3598 44 1 0.7230 11.2068 -3.7828 45 1 2.4672 10.8518 -3.7733 46 1 0.2620 11.1884 -0.1246 47 1 -0.5062 11.5370 -1.6917 48 1 -0.1133 9.8587 -1.2468 49 1 -0.3210 13.8818 -3.4019 50 1 2.8977 3.8868 -2.1326 51 1 2.0841 1.5628 -2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457992464.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:15 Heat of formation + Delta-G solvation = -61.251519 kcal Electronic energy + Delta-G solvation = -26196.068729 eV Core-core repulsion = 22672.326038 eV Total energy + Delta-G solvation = -3523.742691 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.11693 -40.25472 -38.23389 -36.59449 -34.95379 -33.87497 -32.74825 -31.76275 -29.82958 -28.91453 -27.56249 -27.38720 -26.39547 -25.04435 -23.65274 -22.69116 -21.50972 -20.70480 -20.47091 -18.44505 -17.70829 -17.00456 -16.87026 -16.54006 -16.38676 -16.17247 -15.87455 -15.10797 -14.96226 -14.72166 -14.68136 -14.51198 -14.27224 -14.06100 -14.00071 -13.89407 -13.69350 -13.28662 -13.11636 -12.99482 -12.67942 -12.63938 -12.60273 -12.32812 -12.26870 -12.20034 -12.14673 -12.02241 -11.78652 -11.57438 -11.47249 -11.46390 -11.24023 -10.75537 -10.60105 -10.39056 -9.86777 -9.75418 -9.35188 -8.03140 -6.17422 0.46980 0.56873 1.42076 1.44655 1.52147 1.76901 2.35995 2.51896 2.89730 3.20612 3.69932 3.80499 3.96079 4.06818 4.14316 4.21668 4.23994 4.39091 4.46400 4.52566 4.55094 4.56337 4.64333 4.69327 4.71272 4.73328 4.76313 4.87346 4.99384 5.05909 5.06399 5.10723 5.12195 5.12912 5.19749 5.21296 5.22647 5.31441 5.35624 5.41488 5.44049 5.60859 5.65899 5.67383 5.68449 5.79383 5.82023 6.14451 6.18690 6.21937 6.43342 6.73991 6.86654 7.40445 7.49720 8.96216 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.027093 B = 0.002170 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.231369 B =12902.379477 C =13397.350728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.094 4.094 4 C -0.124 4.124 5 C -0.125 4.125 6 C -0.086 4.086 7 C -0.028 4.028 8 H 0.068 0.932 9 C -0.144 4.144 10 C -0.124 4.124 11 C 0.503 3.497 12 O -0.585 6.585 13 N -0.714 5.714 14 C 0.149 3.851 15 C 0.050 3.950 16 C -0.118 4.118 17 C -0.120 4.120 18 C -0.529 4.529 19 H 0.043 0.957 20 C 0.028 3.972 21 N -0.898 5.898 22 Si 0.944 3.056 23 H -0.278 1.278 24 H -0.283 1.283 25 H -0.277 1.277 26 C -0.117 4.117 27 C -0.123 4.123 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.133 0.867 34 H 0.124 0.876 35 H 0.062 0.938 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.408 0.592 41 H 0.035 0.965 42 H 0.037 0.963 43 H 0.040 0.960 44 H 0.059 0.941 45 H 0.017 0.983 46 H 0.016 0.984 47 H 0.062 0.938 48 H 0.037 0.963 49 H 0.260 0.740 50 H 0.131 0.869 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.005 -26.522 3.192 26.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.094 4.094 4 C -0.142 4.142 5 C -0.143 4.143 6 C -0.086 4.086 7 C -0.047 4.047 8 H 0.087 0.913 9 C -0.201 4.201 10 C -0.163 4.163 11 C 0.291 3.709 12 O -0.466 6.466 13 N -0.365 5.365 14 C 0.025 3.975 15 C 0.049 3.951 16 C -0.176 4.176 17 C -0.178 4.178 18 C -0.568 4.568 19 H 0.061 0.939 20 C -0.172 4.172 21 N -0.537 5.537 22 Si 0.771 3.229 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.202 1.202 26 C -0.135 4.135 27 C -0.141 4.141 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.151 0.849 34 H 0.142 0.858 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.127 0.873 39 H 0.132 0.868 40 H 0.245 0.755 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.078 0.922 45 H 0.036 0.964 46 H 0.035 0.965 47 H 0.080 0.920 48 H 0.056 0.944 49 H 0.069 0.931 50 H 0.149 0.851 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.561 -26.217 3.500 26.455 hybrid contribution 0.091 1.549 -0.115 1.556 sum 0.653 -24.667 3.384 24.907 Atomic orbital electron populations 1.21739 0.94420 1.02288 1.01836 1.20572 0.96363 0.91610 1.03505 1.20172 0.98909 0.97206 0.93084 1.21208 0.99931 0.94646 0.98398 1.21240 0.99928 0.95408 0.97771 1.19815 0.99764 0.95163 0.93842 1.19741 0.94444 0.90363 1.00172 0.91327 1.21885 0.95995 1.02032 1.00174 1.21761 1.01220 0.88832 1.04505 1.21295 0.83164 0.88780 0.77652 1.90625 1.26694 1.84860 1.44456 1.46202 1.27823 1.06860 1.55659 1.21205 0.97569 0.80123 0.98647 1.18363 0.91757 0.92479 0.92468 1.21640 1.00162 0.97829 0.97948 1.21684 0.99418 0.98572 0.98114 1.21255 1.11026 0.92609 1.31866 0.93872 1.25457 0.94899 1.01701 0.95167 1.69928 1.13985 1.33692 1.36062 0.85797 0.77926 0.80976 0.78238 1.20422 1.20861 1.20194 1.21164 0.99390 0.95107 0.97814 1.21252 0.99761 0.94750 0.98321 0.92943 0.91265 0.93080 0.90291 0.90447 0.84903 0.85832 0.91853 0.92875 0.92693 0.87346 0.86759 0.75462 0.94670 0.94471 0.94147 0.92211 0.96373 0.96471 0.91950 0.94368 0.93050 0.85090 0.84640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.89 71.98 0.71 -0.78 16 2 C -0.08 -0.91 6.06 29.85 0.18 -0.72 16 3 C -0.09 -1.44 5.13 -19.87 -0.10 -1.55 16 4 C -0.12 -2.05 9.70 22.27 0.22 -1.84 16 5 C -0.13 -2.39 9.67 22.27 0.22 -2.17 16 6 C -0.09 -1.70 4.78 -19.87 -0.09 -1.80 16 7 C -0.03 -0.64 2.21 -11.54 -0.03 -0.67 16 8 H 0.07 1.78 7.69 -2.39 -0.02 1.76 16 9 C -0.14 -3.45 8.75 71.98 0.63 -2.82 16 10 C -0.12 -2.76 4.91 29.85 0.15 -2.61 16 11 C 0.50 16.15 7.55 87.66 0.66 16.82 16 12 O -0.59 -23.36 13.97 -3.03 -0.04 -23.40 16 13 N -0.71 -23.96 4.90 -463.07 -2.27 -26.23 16 14 C 0.15 6.31 4.50 86.38 0.39 6.70 16 15 C 0.05 2.30 0.50 -52.93 -0.03 2.28 16 16 C -0.12 -5.19 8.03 71.98 0.58 -4.61 16 17 C -0.12 -5.32 8.11 71.98 0.58 -4.74 16 18 C -0.53 -28.10 8.01 25.60 0.20 -27.90 16 19 H 0.04 2.35 7.75 -2.91 -0.02 2.33 16 20 C 0.03 1.46 5.13 84.65 0.43 1.90 16 21 N -0.90 -47.97 9.45 21.45 0.20 -47.77 16 22 Si 0.94 42.82 29.54 68.60 2.03 44.85 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 24 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 26 C -0.12 -2.05 8.76 22.27 0.20 -1.86 16 27 C -0.12 -1.94 9.70 22.27 0.22 -1.72 16 28 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.08 0.73 8.09 -2.39 -0.02 0.71 16 32 H 0.08 0.73 8.09 -2.39 -0.02 0.71 16 33 H 0.13 1.72 8.06 -2.91 -0.02 1.69 16 34 H 0.12 2.18 7.95 -2.91 -0.02 2.16 16 35 H 0.06 1.30 7.40 -2.39 -0.02 1.29 16 36 H 0.05 1.60 5.95 -2.39 -0.01 1.58 16 37 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.11 2.05 7.56 -2.39 -0.02 2.04 16 40 H 0.41 11.82 6.16 -92.71 -0.57 11.25 16 41 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.04 1.46 6.71 -2.39 -0.02 1.44 16 44 H 0.06 2.91 6.25 -2.39 -0.01 2.89 16 45 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.06 3.08 6.10 -2.39 -0.01 3.07 16 48 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 49 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16 50 H 0.13 1.97 7.16 -2.91 -0.02 1.95 16 51 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -61.33 398.01 5.35 -55.98 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.32 Total: 24.68 kcal Atomic # 6 Polarization: -33.21 SS G_CDS: 5.11 Total: -28.10 kcal Atomic # 7 Polarization: -71.93 SS G_CDS: -2.07 Total: -74.00 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.04 Total: -23.40 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -61.33 5.35 -55.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457992464.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.275 kcal (2) G-P(sol) polarization free energy of solvation -61.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds