Wall clock time and date at job start Tue Mar 31 2020 11:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38235 * 119.99933 * 179.78838 * 4 3 2 6 6 C 1.38240 * 119.99615 * 0.44078 * 5 4 3 7 7 C 1.50703 * 119.99825 * 179.83444 * 6 5 4 8 8 H 1.08999 * 109.47338 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47040 * 59.97520 * 7 6 5 10 10 C 1.53006 * 109.47008 * 299.98123 * 7 6 5 11 11 C 1.50704 * 109.46855 * 185.00302 * 10 7 6 12 12 O 1.21277 * 120.00348 * 359.97438 * 11 10 7 13 13 N 1.34776 * 119.99751 * 179.97438 * 11 10 7 14 14 C 1.46499 * 119.99646 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46750 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.46967 * 299.99591 * 15 14 13 17 17 C 1.52994 * 109.47432 * 60.00027 * 15 14 13 18 18 C 1.50704 * 109.46855 * 180.02562 * 15 14 13 19 19 H 1.07993 * 120.00064 * 359.97438 * 18 15 14 20 20 C 1.37879 * 119.99592 * 180.02562 * 18 15 14 21 21 N 1.31509 * 120.00478 * 359.97438 * 20 18 15 22 22 Si 1.86802 * 119.99579 * 179.97438 * 20 18 15 23 23 H 1.48499 * 109.47481 * 89.99672 * 22 20 18 24 24 H 1.48508 * 109.46855 * 209.99432 * 22 20 18 25 25 H 1.48493 * 109.47131 * 329.99550 * 22 20 18 26 26 C 1.38227 * 120.00231 * 359.81118 * 6 5 4 27 27 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 33 33 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 34 34 H 1.08002 * 120.00360 * 180.27290 * 5 4 3 35 35 H 1.09004 * 109.47030 * 180.02562 * 9 7 6 36 36 H 1.08996 * 109.47378 * 299.99872 * 9 7 6 37 37 H 1.09006 * 109.47111 * 60.00419 * 9 7 6 38 38 H 1.08999 * 109.46955 * 304.99332 * 10 7 6 39 39 H 1.08993 * 109.47689 * 64.99776 * 10 7 6 40 40 H 0.96997 * 120.00295 * 359.97438 * 13 11 10 41 41 H 1.08998 * 109.47298 * 299.99310 * 14 13 11 42 42 H 1.08995 * 109.47677 * 59.99860 * 14 13 11 43 43 H 1.08997 * 109.46745 * 60.00189 * 16 15 14 44 44 H 1.08999 * 109.47192 * 180.02562 * 16 15 14 45 45 H 1.09003 * 109.47396 * 300.00121 * 16 15 14 46 46 H 1.08998 * 109.47552 * 60.00225 * 17 15 14 47 47 H 1.09006 * 109.47202 * 180.02562 * 17 15 14 48 48 H 1.09004 * 109.46773 * 299.99574 * 17 15 14 49 49 H 0.96997 * 120.00453 * 180.02562 * 21 20 18 50 50 H 1.08002 * 120.00166 * 179.97438 * 26 6 5 51 51 H 1.07996 * 120.00605 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7246 3.3753 -1.1972 6 6 2.9541 4.0273 0.0000 7 6 3.4554 5.4485 0.0000 8 1 3.5755 5.7915 1.0276 9 6 2.4474 6.3448 -0.7223 10 6 4.8036 5.5137 -0.7205 11 6 5.3631 6.9090 -0.6140 12 8 4.7442 7.7669 -0.0208 13 7 6.5512 7.2035 -1.1781 14 6 7.0947 8.5600 -1.0750 15 6 8.4430 8.6252 -1.7954 16 6 9.4149 7.6360 -1.1490 17 6 8.2517 8.2630 -3.2695 18 6 9.0024 10.0205 -1.6889 19 1 8.4513 10.7844 -1.1607 20 6 10.2174 10.3220 -2.2668 21 7 10.8884 9.3919 -2.9104 22 14 10.9105 12.0517 -2.1354 23 1 11.7464 12.1586 -0.9126 24 1 11.7423 12.3437 -3.3305 25 1 9.7941 13.0278 -2.0586 26 6 2.7234 3.3758 1.1971 27 6 2.2627 2.0725 1.1971 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 2.0926 1.5598 -2.1325 34 1 2.9045 3.8845 -2.1325 35 1 2.8103 7.3727 -0.7227 36 1 2.3273 6.0019 -1.7499 37 1 1.4869 6.2984 -0.2090 38 1 5.4959 4.8087 -0.2603 39 1 4.6673 5.2560 -1.7707 40 1 7.0463 6.5173 -1.6522 41 1 6.4026 9.2648 -1.5360 42 1 7.2305 8.8183 -0.0249 43 1 9.0104 6.6267 -1.2256 44 1 10.3755 7.6827 -1.6619 45 1 9.5512 7.8940 -0.0988 46 1 7.5594 8.9678 -3.7300 47 1 9.2124 8.3090 -3.7826 48 1 7.8474 7.2537 -3.3461 49 1 11.7433 9.6039 -3.3166 50 1 2.9031 3.8851 2.1324 51 1 2.0824 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457992465.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:17 Heat of formation + Delta-G solvation = -61.414409 kcal Electronic energy + Delta-G solvation = -26161.561144 eV Core-core repulsion = 22637.811390 eV Total energy + Delta-G solvation = -3523.749754 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.11644 -40.25500 -38.23434 -36.59569 -34.95841 -33.87712 -32.74486 -31.76375 -29.83374 -28.91148 -27.55728 -27.38931 -26.39554 -25.04736 -23.65287 -22.68860 -21.51156 -20.70580 -20.47197 -18.44330 -17.70663 -17.01661 -16.87157 -16.54170 -16.38832 -16.16822 -15.87257 -15.09580 -14.96324 -14.75466 -14.54589 -14.49541 -14.40546 -14.24194 -13.95193 -13.90567 -13.52932 -13.23877 -13.09645 -13.01268 -12.76944 -12.64288 -12.59479 -12.32300 -12.26749 -12.20291 -12.13925 -12.02567 -11.78985 -11.56574 -11.47465 -11.46349 -11.24049 -10.75019 -10.59789 -10.39594 -9.87044 -9.75477 -9.35315 -8.02271 -6.17849 0.46945 0.56810 1.41780 1.44733 1.52855 1.76843 2.36079 2.51978 2.89703 3.21087 3.69908 3.80407 3.95698 4.06994 4.14436 4.21572 4.23556 4.38904 4.46433 4.52627 4.55026 4.55820 4.64465 4.69133 4.71039 4.73091 4.76286 4.87152 4.99212 5.05897 5.06746 5.10363 5.12142 5.13086 5.20284 5.21155 5.22427 5.31324 5.35749 5.41025 5.43900 5.60811 5.66112 5.67362 5.67792 5.79327 5.81979 6.15846 6.18637 6.22536 6.43990 6.73995 6.86464 7.40400 7.49690 8.96477 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.032710 B = 0.002096 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.809728 B =13354.044675 C =13673.259639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.094 4.094 4 C -0.123 4.123 5 C -0.117 4.117 6 C -0.086 4.086 7 C -0.028 4.028 8 H 0.068 0.932 9 C -0.144 4.144 10 C -0.124 4.124 11 C 0.503 3.497 12 O -0.585 6.585 13 N -0.714 5.714 14 C 0.149 3.851 15 C 0.049 3.951 16 C -0.120 4.120 17 C -0.120 4.120 18 C -0.528 4.528 19 H 0.043 0.957 20 C 0.027 3.973 21 N -0.899 5.899 22 Si 0.944 3.056 23 H -0.279 1.279 24 H -0.282 1.282 25 H -0.277 1.277 26 C -0.125 4.125 27 C -0.124 4.124 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.408 0.592 41 H 0.036 0.964 42 H 0.035 0.965 43 H 0.038 0.962 44 H 0.062 0.938 45 H 0.016 0.984 46 H 0.017 0.983 47 H 0.062 0.938 48 H 0.038 0.962 49 H 0.260 0.740 50 H 0.124 0.876 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.312 -20.349 3.191 26.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.094 4.094 4 C -0.141 4.141 5 C -0.135 4.135 6 C -0.086 4.086 7 C -0.047 4.047 8 H 0.087 0.913 9 C -0.201 4.201 10 C -0.163 4.163 11 C 0.291 3.709 12 O -0.466 6.466 13 N -0.365 5.365 14 C 0.025 3.975 15 C 0.049 3.951 16 C -0.178 4.178 17 C -0.178 4.178 18 C -0.566 4.566 19 H 0.061 0.939 20 C -0.173 4.173 21 N -0.537 5.537 22 Si 0.771 3.229 23 H -0.205 1.205 24 H -0.208 1.208 25 H -0.202 1.202 26 C -0.143 4.143 27 C -0.142 4.142 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.154 0.846 34 H 0.149 0.851 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.127 0.873 39 H 0.132 0.868 40 H 0.245 0.755 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.081 0.919 45 H 0.035 0.965 46 H 0.036 0.964 47 H 0.080 0.920 48 H 0.057 0.943 49 H 0.070 0.930 50 H 0.142 0.858 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.561 -19.757 3.495 26.664 hybrid contribution 0.921 1.241 -0.037 1.546 sum -16.640 -18.516 3.457 25.133 Atomic orbital electron populations 1.21732 0.94406 1.02290 1.01791 1.20577 0.96383 0.91613 1.03531 1.20171 0.98912 0.97201 0.93084 1.21251 0.99751 0.94759 0.98321 1.21165 0.99469 0.95027 0.97813 1.19816 0.99976 0.94952 0.93844 1.19743 0.93226 0.91574 1.00173 0.91326 1.21887 0.98243 0.99797 1.00162 1.21763 0.97722 0.92316 1.04516 1.21302 0.80510 0.91460 0.77628 1.90624 1.60137 1.51429 1.44458 1.46195 1.21175 1.13251 1.55919 1.21210 0.95365 0.82283 0.98648 1.18374 0.89498 0.94739 0.92517 1.21667 1.01879 0.96192 0.98068 1.21659 1.00927 0.97047 0.98130 1.21271 1.04681 0.96001 1.34677 0.93881 1.25455 0.97034 0.99915 0.94853 1.69900 1.14536 1.33384 1.35901 0.85773 0.78240 0.81391 0.77473 1.20534 1.20776 1.20159 1.21238 1.00004 0.95334 0.97770 1.21208 0.99938 0.94638 0.98398 0.91241 0.93090 0.92966 0.90447 0.90288 0.84638 0.85092 0.92873 0.91861 0.92702 0.87321 0.86759 0.75473 0.94562 0.94649 0.94332 0.91936 0.96451 0.96368 0.91954 0.94291 0.93035 0.85832 0.84902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.89 71.98 0.71 -0.74 16 2 C -0.08 -0.91 6.07 29.85 0.18 -0.73 16 3 C -0.09 -1.45 5.13 -19.87 -0.10 -1.55 16 4 C -0.12 -1.94 9.70 22.27 0.22 -1.73 16 5 C -0.12 -2.05 8.76 22.27 0.20 -1.86 16 6 C -0.09 -1.71 4.78 -19.87 -0.09 -1.80 16 7 C -0.03 -0.64 2.21 -11.54 -0.03 -0.67 16 8 H 0.07 1.79 7.69 -2.39 -0.02 1.77 16 9 C -0.14 -3.46 8.75 71.98 0.63 -2.83 16 10 C -0.12 -2.76 4.91 29.85 0.15 -2.62 16 11 C 0.50 16.19 7.55 87.66 0.66 16.85 16 12 O -0.59 -23.41 13.96 -3.02 -0.04 -23.45 16 13 N -0.71 -24.04 4.96 -463.06 -2.30 -26.33 16 14 C 0.15 6.33 4.50 86.38 0.39 6.72 16 15 C 0.05 2.28 0.50 -52.93 -0.03 2.25 16 16 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 17 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 18 C -0.53 -28.02 8.01 25.60 0.21 -27.82 16 19 H 0.04 2.34 7.74 -2.91 -0.02 2.32 16 20 C 0.03 1.44 5.15 84.66 0.44 1.87 16 21 N -0.90 -47.90 9.35 21.45 0.20 -47.70 16 22 Si 0.94 42.78 29.54 68.60 2.03 44.81 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 25 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 26 C -0.13 -2.39 9.67 22.27 0.22 -2.17 16 27 C -0.12 -2.05 9.70 22.27 0.22 -1.84 16 28 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.08 0.74 8.09 -2.39 -0.02 0.72 16 32 H 0.08 0.74 8.08 -2.39 -0.02 0.72 16 33 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 34 H 0.13 1.98 7.16 -2.91 -0.02 1.96 16 35 H 0.05 1.60 5.95 -2.39 -0.01 1.59 16 36 H 0.06 1.31 7.39 -2.39 -0.02 1.29 16 37 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.11 2.06 7.57 -2.39 -0.02 2.04 16 40 H 0.41 11.86 6.16 -92.71 -0.57 11.29 16 41 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.04 1.41 6.86 -2.39 -0.02 1.40 16 44 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 45 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.02 0.78 8.14 -2.39 -0.02 0.77 16 47 H 0.06 3.06 6.07 -2.38 -0.01 3.05 16 48 H 0.04 1.42 6.86 -2.38 -0.02 1.40 16 49 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 50 H 0.12 2.19 7.95 -2.91 -0.02 2.16 16 51 H 0.13 1.72 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -61.26 397.94 5.33 -55.93 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 0.32 Total: 24.84 kcal Atomic # 6 Polarization: -33.22 SS G_CDS: 5.12 Total: -28.10 kcal Atomic # 7 Polarization: -71.94 SS G_CDS: -2.10 Total: -74.03 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.04 Total: -23.45 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -61.26 5.33 -55.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457992465.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.482 kcal (2) G-P(sol) polarization free energy of solvation -61.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds