Wall clock time and date at job start Tue Mar 31 2020 12:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46903 * 2 1 4 4 C 1.52999 * 109.46901 * 240.00006 * 2 1 3 5 5 C 1.50703 * 109.46771 * 120.00292 * 2 1 3 6 6 C 1.38234 * 120.00257 * 60.00257 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.27927 * 6 5 2 8 8 C 1.38229 * 120.00124 * 359.45911 * 7 6 5 9 9 C 1.50699 * 120.00230 * 180.28369 * 8 7 6 10 10 C 1.50691 * 109.47261 * 270.27992 * 9 8 7 11 11 O 1.21285 * 119.99959 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00271 * 179.97438 * 10 9 8 13 13 C 1.46504 * 120.00023 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46839 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47143 * 300.00156 * 14 13 12 16 16 C 1.52995 * 109.47384 * 60.00361 * 14 13 12 17 17 C 1.50701 * 109.46956 * 180.02562 * 14 13 12 18 18 H 1.08000 * 120.00289 * 359.97438 * 17 14 13 19 19 C 1.37882 * 119.99994 * 179.97438 * 17 14 13 20 20 N 1.31514 * 119.99792 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 120.00077 * 179.97438 * 19 17 14 22 22 H 1.48499 * 109.46597 * 60.00041 * 21 19 17 23 23 H 1.48496 * 109.47049 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47030 * 300.00462 * 21 19 17 25 25 C 1.38234 * 119.99957 * 0.56005 * 8 7 6 26 26 C 1.38234 * 119.99503 * 240.01857 * 5 2 1 27 27 H 1.09007 * 109.47341 * 299.99607 * 1 2 3 28 28 H 1.08998 * 109.47273 * 59.99893 * 1 2 3 29 29 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46371 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47244 * 300.00125 * 3 2 1 32 32 H 1.08999 * 109.46950 * 60.00346 * 3 2 1 33 33 H 1.09001 * 109.46958 * 300.00030 * 4 2 1 34 34 H 1.08998 * 109.47075 * 59.99980 * 4 2 1 35 35 H 1.08997 * 109.46840 * 179.97438 * 4 2 1 36 36 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 37 37 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 38 38 H 1.09007 * 109.47085 * 30.27493 * 9 8 7 39 39 H 1.08998 * 109.47270 * 150.26989 * 9 8 7 40 40 H 0.97005 * 119.99973 * 0.02562 * 12 10 9 41 41 H 1.08995 * 109.47200 * 299.99967 * 13 12 10 42 42 H 1.09003 * 109.46824 * 60.00824 * 13 12 10 43 43 H 1.09000 * 109.47077 * 60.00328 * 15 14 13 44 44 H 1.09007 * 109.47233 * 180.02562 * 15 14 13 45 45 H 1.09002 * 109.47269 * 300.00472 * 15 14 13 46 46 H 1.08995 * 109.47450 * 59.99762 * 16 14 13 47 47 H 1.08998 * 109.47568 * 180.02562 * 16 14 13 48 48 H 1.09000 * 109.47114 * 299.99843 * 16 14 13 49 49 H 0.97003 * 120.00004 * 179.97438 * 20 19 17 50 50 H 1.08001 * 120.00274 * 179.72697 * 25 8 7 51 51 H 1.07997 * 120.00460 * 0.02562 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 6 1.6983 -2.0340 1.4492 7 6 2.1544 -2.6839 2.5808 8 6 2.9534 -2.0137 3.4880 9 6 3.4558 -2.7241 4.7185 10 6 2.4630 -2.5513 5.8388 11 8 1.4476 -1.9136 5.6563 12 7 2.7034 -3.1054 7.0437 13 6 1.7384 -2.9369 8.1331 14 6 2.2484 -3.6582 9.3823 15 6 2.4184 -5.1479 9.0773 16 6 3.5961 -3.0659 9.7988 17 6 1.2555 -3.4854 10.5027 18 1 0.3513 -2.9175 10.3402 19 6 1.5013 -4.0524 11.7353 20 7 2.6026 -4.7435 11.9333 21 14 0.2709 -3.8376 13.1243 22 1 -1.0374 -4.4119 12.7197 23 1 0.7659 -4.5378 14.3367 24 1 0.1064 -2.3918 13.4207 25 6 3.2870 -0.6901 3.2695 26 6 2.8267 -0.0386 2.1406 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2492 34 1 1.6766 -0.2074 -2.1392 35 1 3.1299 -0.7208 -1.2495 36 1 1.0771 -2.5587 0.7384 37 1 1.8898 -3.7166 2.7539 38 1 3.5773 -3.7854 4.5012 39 1 4.4159 -2.3019 5.0152 40 1 3.5156 -3.6151 7.1899 41 1 1.6176 -1.8757 8.3507 42 1 0.7781 -3.3586 7.8363 43 1 3.1364 -5.2732 8.2668 44 1 2.7813 -5.6619 9.9674 45 1 1.4582 -5.5699 8.7806 46 1 3.4751 -2.0047 10.0160 47 1 3.9597 -3.5801 10.6884 48 1 4.3141 -3.1912 8.9883 49 1 2.7758 -5.1420 12.8005 50 1 3.9077 -0.1652 3.9806 51 1 3.0870 0.9956 1.9701 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457992918.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:54 Heat of formation + Delta-G solvation = -42.561380 kcal Electronic energy + Delta-G solvation = -26335.223088 eV Core-core repulsion = 22812.290862 eV Total energy + Delta-G solvation = -3522.932226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.15140 -39.07697 -36.80327 -36.12299 -33.24259 -32.04392 -31.10505 -30.76685 -27.62240 -27.48578 -27.47125 -25.72945 -25.49484 -24.62794 -22.36347 -22.19476 -20.04159 -19.27325 -18.77233 -16.91334 -16.61523 -15.73239 -15.67963 -15.29958 -14.77237 -14.61579 -14.56439 -14.47120 -13.93316 -13.79010 -13.46254 -13.36212 -12.95431 -12.89397 -12.76649 -12.31046 -12.19942 -12.04686 -11.91201 -11.89076 -11.76893 -11.42812 -11.30748 -11.18958 -11.14636 -10.84059 -10.74468 -10.70518 -10.59240 -10.38192 -10.20521 -9.63372 -9.54751 -9.25663 -8.84176 -8.79940 -8.45437 -8.43883 -8.28866 -6.02069 -4.12084 1.35891 1.47968 3.10279 3.30068 3.34254 3.37796 3.61539 4.03264 4.39955 4.41060 4.53950 4.77351 4.78197 4.92299 5.02962 5.09008 5.24508 5.28104 5.33998 5.36985 5.38761 5.45666 5.51922 5.53776 5.62617 5.63350 5.68533 5.78041 5.83297 6.01579 6.06756 6.08200 6.11253 6.25354 6.33971 6.47827 6.51368 6.62956 6.66319 6.79264 6.82167 6.93846 7.01883 7.04842 7.06055 7.35681 7.55508 7.69306 8.00905 8.07741 8.16956 8.38863 8.75255 8.88673 9.53574 10.99261 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.029877 B = 0.002191 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.944567 B =12776.710779 C =13046.742447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.029 4.029 3 C -0.144 4.144 4 C -0.137 4.137 5 C -0.076 4.076 6 C -0.115 4.115 7 C -0.103 4.103 8 C -0.061 4.061 9 C -0.106 4.106 10 C 0.504 3.496 11 O -0.544 6.544 12 N -0.719 5.719 13 C 0.133 3.867 14 C 0.056 3.944 15 C -0.131 4.131 16 C -0.130 4.130 17 C -0.506 4.506 18 H 0.056 0.944 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C -0.103 4.103 26 C -0.121 4.121 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.397 0.603 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.006 0.994 44 H 0.085 0.915 45 H 0.026 0.974 46 H 0.026 0.974 47 H 0.085 0.915 48 H 0.006 0.994 49 H 0.260 0.740 50 H 0.118 0.882 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.715 5.912 -23.036 24.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.029 4.029 3 C -0.201 4.201 4 C -0.194 4.194 5 C -0.076 4.076 6 C -0.133 4.133 7 C -0.121 4.121 8 C -0.062 4.062 9 C -0.146 4.146 10 C 0.290 3.710 11 O -0.422 6.422 12 N -0.370 5.370 13 C 0.010 3.990 14 C 0.055 3.945 15 C -0.188 4.188 16 C -0.188 4.188 17 C -0.544 4.544 18 H 0.075 0.925 19 C -0.135 4.135 20 N -0.525 5.525 21 Si 0.722 3.278 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.121 4.121 26 C -0.139 4.139 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.232 0.768 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.025 0.975 44 H 0.104 0.896 45 H 0.045 0.955 46 H 0.045 0.955 47 H 0.104 0.896 48 H 0.025 0.975 49 H 0.070 0.930 50 H 0.136 0.864 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.064 6.262 -22.987 24.020 hybrid contribution -0.287 -0.209 1.025 1.085 sum 2.777 6.053 -21.962 22.949 Atomic orbital electron populations 1.21892 0.93744 1.02129 1.01831 1.19486 0.95702 0.94973 0.92779 1.21959 1.01120 0.95095 1.01902 1.21879 1.01157 1.00215 0.96170 1.19728 0.97905 0.94038 0.95889 1.20854 1.00451 0.94377 0.97657 1.20939 0.97088 0.99951 0.94102 1.19295 0.97928 0.94294 0.94638 1.20718 0.99217 1.02370 0.92317 1.20415 0.87305 0.79755 0.83571 1.90693 1.28125 1.40830 1.82561 1.46328 1.25223 1.53954 1.11484 1.21688 0.90814 1.00210 0.86257 1.18354 0.94142 0.91738 0.90275 1.21830 0.97784 0.99178 1.00036 1.21825 0.96803 0.99311 1.00881 1.20951 1.05201 1.33152 0.95142 0.92538 1.24884 0.95390 0.94877 0.98395 1.69794 1.24635 1.34634 1.23423 0.86630 0.81534 0.78323 0.81357 1.20286 1.21326 1.20290 1.20968 1.00134 0.93884 0.97132 1.21073 0.98545 0.99855 0.94413 0.92345 0.92524 0.92424 0.92303 0.92528 0.92184 0.92451 0.92527 0.92550 0.86455 0.86356 0.88305 0.88299 0.76768 0.92865 0.92857 0.97477 0.89602 0.95484 0.95478 0.89611 0.97479 0.92960 0.86358 0.85891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.29 37.16 0.31 -0.87 16 2 C -0.03 -0.25 0.85 -155.66 -0.13 -0.39 16 3 C -0.14 -1.09 7.13 37.16 0.27 -0.83 16 4 C -0.14 -1.02 8.29 37.16 0.31 -0.71 16 5 C -0.08 -0.83 4.76 -104.62 -0.50 -1.33 16 6 C -0.12 -1.33 8.71 -39.58 -0.34 -1.67 16 7 C -0.10 -1.30 9.70 -39.58 -0.38 -1.68 16 8 C -0.06 -0.81 4.37 -104.63 -0.46 -1.27 16 9 C -0.11 -1.32 5.83 -29.04 -0.17 -1.49 16 10 C 0.50 8.65 7.82 -10.99 -0.09 8.56 16 11 O -0.54 -11.56 16.03 5.55 0.09 -11.48 16 12 N -0.72 -12.65 4.96 -60.29 -0.30 -12.94 16 13 C 0.13 2.84 4.50 -4.04 -0.02 2.82 16 14 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 15 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 16 C -0.13 -2.93 8.08 37.15 0.30 -2.63 16 17 C -0.51 -13.30 8.01 -34.44 -0.28 -13.57 16 18 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 19 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 20 N -0.89 -23.59 9.35 55.43 0.52 -23.07 16 21 Si 0.89 20.80 29.54 -169.99 -5.02 15.77 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 C -0.10 -1.31 9.70 -39.58 -0.38 -1.69 16 26 C -0.12 -1.39 8.98 -39.58 -0.36 -1.75 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.49 7.39 -51.93 -0.38 0.10 16 30 H 0.06 0.43 7.51 -51.93 -0.39 0.04 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.48 7.51 -51.93 -0.39 0.09 16 33 H 0.06 0.42 7.39 -51.93 -0.38 0.03 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.12 1.13 7.10 -52.49 -0.37 0.76 16 37 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 38 H 0.10 1.02 8.09 -51.93 -0.42 0.60 16 39 H 0.10 1.02 8.09 -51.93 -0.42 0.60 16 40 H 0.40 6.21 6.16 -40.82 -0.25 5.95 16 41 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 44 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 48 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 49 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 50 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 51 H 0.12 1.19 5.89 -52.49 -0.31 0.88 16 LS Contribution 396.41 15.07 5.97 5.97 Total: -1.00 -29.52 396.41 -9.39 -38.91 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -8.86 Total: 5.09 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -1.80 Total: -18.26 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.22 Total: -36.02 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.52 -9.39 -38.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457992918.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.649 kcal (2) G-P(sol) polarization free energy of solvation -29.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds