Wall clock time and date at job start Tue Mar 31 2020 12:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46903 * 2 1 4 4 C 1.52999 * 109.46901 * 240.00006 * 2 1 3 5 5 C 1.50703 * 109.46771 * 120.00292 * 2 1 3 6 6 C 1.38234 * 120.00257 * 60.00257 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.27927 * 6 5 2 8 8 C 1.38229 * 120.00124 * 359.45911 * 7 6 5 9 9 C 1.50699 * 120.00230 * 180.28369 * 8 7 6 10 10 C 1.50691 * 109.47261 * 270.27992 * 9 8 7 11 11 O 1.21285 * 119.99959 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00271 * 179.97438 * 10 9 8 13 13 C 1.46504 * 120.00023 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46839 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47143 * 300.00156 * 14 13 12 16 16 C 1.52995 * 109.47384 * 60.00361 * 14 13 12 17 17 C 1.50701 * 109.46956 * 180.02562 * 14 13 12 18 18 H 1.08000 * 120.00289 * 359.97438 * 17 14 13 19 19 C 1.37882 * 119.99994 * 179.97438 * 17 14 13 20 20 N 1.31514 * 119.99792 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 120.00077 * 179.97438 * 19 17 14 22 22 H 1.48499 * 109.46597 * 60.00041 * 21 19 17 23 23 H 1.48496 * 109.47049 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47030 * 300.00462 * 21 19 17 25 25 C 1.38234 * 119.99957 * 0.56005 * 8 7 6 26 26 C 1.38234 * 119.99503 * 240.01857 * 5 2 1 27 27 H 1.09007 * 109.47341 * 299.99607 * 1 2 3 28 28 H 1.08998 * 109.47273 * 59.99893 * 1 2 3 29 29 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46371 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47244 * 300.00125 * 3 2 1 32 32 H 1.08999 * 109.46950 * 60.00346 * 3 2 1 33 33 H 1.09001 * 109.46958 * 300.00030 * 4 2 1 34 34 H 1.08998 * 109.47075 * 59.99980 * 4 2 1 35 35 H 1.08997 * 109.46840 * 179.97438 * 4 2 1 36 36 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 37 37 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 38 38 H 1.09007 * 109.47085 * 30.27493 * 9 8 7 39 39 H 1.08998 * 109.47270 * 150.26989 * 9 8 7 40 40 H 0.97005 * 119.99973 * 0.02562 * 12 10 9 41 41 H 1.08995 * 109.47200 * 299.99967 * 13 12 10 42 42 H 1.09003 * 109.46824 * 60.00824 * 13 12 10 43 43 H 1.09000 * 109.47077 * 60.00328 * 15 14 13 44 44 H 1.09007 * 109.47233 * 180.02562 * 15 14 13 45 45 H 1.09002 * 109.47269 * 300.00472 * 15 14 13 46 46 H 1.08995 * 109.47450 * 59.99762 * 16 14 13 47 47 H 1.08998 * 109.47568 * 180.02562 * 16 14 13 48 48 H 1.09000 * 109.47114 * 299.99843 * 16 14 13 49 49 H 0.97003 * 120.00004 * 179.97438 * 20 19 17 50 50 H 1.08001 * 120.00274 * 179.72697 * 25 8 7 51 51 H 1.07997 * 120.00460 * 0.02562 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 6 1.6983 -2.0340 1.4492 7 6 2.1544 -2.6839 2.5808 8 6 2.9534 -2.0137 3.4880 9 6 3.4558 -2.7241 4.7185 10 6 2.4630 -2.5513 5.8388 11 8 1.4476 -1.9136 5.6563 12 7 2.7034 -3.1054 7.0437 13 6 1.7384 -2.9369 8.1331 14 6 2.2484 -3.6582 9.3823 15 6 2.4184 -5.1479 9.0773 16 6 3.5961 -3.0659 9.7988 17 6 1.2555 -3.4854 10.5027 18 1 0.3513 -2.9175 10.3402 19 6 1.5013 -4.0524 11.7353 20 7 2.6026 -4.7435 11.9333 21 14 0.2709 -3.8376 13.1243 22 1 -1.0374 -4.4119 12.7197 23 1 0.7659 -4.5378 14.3367 24 1 0.1064 -2.3918 13.4207 25 6 3.2870 -0.6901 3.2695 26 6 2.8267 -0.0386 2.1406 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2492 34 1 1.6766 -0.2074 -2.1392 35 1 3.1299 -0.7208 -1.2495 36 1 1.0771 -2.5587 0.7384 37 1 1.8898 -3.7166 2.7539 38 1 3.5773 -3.7854 4.5012 39 1 4.4159 -2.3019 5.0152 40 1 3.5156 -3.6151 7.1899 41 1 1.6176 -1.8757 8.3507 42 1 0.7781 -3.3586 7.8363 43 1 3.1364 -5.2732 8.2668 44 1 2.7813 -5.6619 9.9674 45 1 1.4582 -5.5699 8.7806 46 1 3.4751 -2.0047 10.0160 47 1 3.9597 -3.5801 10.6884 48 1 4.3141 -3.1912 8.9883 49 1 2.7758 -5.1420 12.8005 50 1 3.9077 -0.1652 3.9806 51 1 3.0870 0.9956 1.9701 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457992918.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:53 Heat of formation + Delta-G solvation = -56.384259 kcal Electronic energy + Delta-G solvation = -26335.822493 eV Core-core repulsion = 22812.290862 eV Total energy + Delta-G solvation = -3523.531630 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.16578 -40.32059 -38.20767 -37.27627 -34.95877 -33.19505 -32.42452 -31.96934 -28.64434 -28.21071 -28.08305 -27.55644 -27.36807 -26.26932 -23.23556 -23.17512 -21.39872 -20.58903 -20.03235 -18.37708 -17.65673 -17.48109 -16.72455 -16.66156 -16.35948 -15.88714 -15.70213 -15.14069 -14.92746 -14.85192 -14.68597 -14.57303 -14.45204 -14.22974 -13.99471 -13.51380 -13.25165 -13.08711 -13.01374 -12.85387 -12.81323 -12.64465 -12.63625 -12.53717 -12.52789 -12.24620 -12.15623 -12.13716 -11.80799 -11.48009 -11.47929 -11.33056 -11.26598 -10.85303 -10.68534 -10.39734 -9.90628 -9.74320 -9.37137 -8.02595 -6.18240 0.44878 0.57550 1.43114 1.44261 1.50926 1.75577 2.35238 2.50572 2.97133 3.20637 3.65743 3.83103 3.83629 4.10822 4.12340 4.14737 4.19371 4.41491 4.44985 4.47248 4.52853 4.58548 4.66104 4.71858 4.72731 4.79756 4.86286 4.91135 5.00172 5.02546 5.04283 5.06673 5.08385 5.12106 5.19395 5.20056 5.22636 5.27619 5.38532 5.39070 5.45743 5.61421 5.62983 5.66789 5.67821 5.73740 5.78851 6.16012 6.17614 6.22195 6.43693 6.73246 6.85661 7.39275 7.49172 8.95927 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.029877 B = 0.002191 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.944567 B =12776.710779 C =13046.742447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.031 4.031 3 C -0.143 4.143 4 C -0.134 4.134 5 C -0.078 4.078 6 C -0.124 4.124 7 C -0.118 4.118 8 C -0.082 4.082 9 C -0.094 4.094 10 C 0.504 3.496 11 O -0.589 6.589 12 N -0.712 5.712 13 C 0.150 3.850 14 C 0.051 3.949 15 C -0.121 4.121 16 C -0.120 4.120 17 C -0.530 4.530 18 H 0.042 0.958 19 C 0.028 3.972 20 N -0.898 5.898 21 Si 0.944 3.056 22 H -0.278 1.278 23 H -0.282 1.282 24 H -0.278 1.278 25 C -0.119 4.119 26 C -0.131 4.131 27 H 0.042 0.958 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.132 0.868 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.410 0.590 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.040 0.960 44 H 0.062 0.938 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.062 0.938 48 H 0.040 0.960 49 H 0.260 0.740 50 H 0.125 0.875 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.614 5.968 -24.757 25.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.031 4.031 3 C -0.200 4.200 4 C -0.191 4.191 5 C -0.078 4.078 6 C -0.142 4.142 7 C -0.136 4.136 8 C -0.083 4.083 9 C -0.134 4.134 10 C 0.292 3.708 11 O -0.469 6.469 12 N -0.364 5.364 13 C 0.026 3.974 14 C 0.050 3.950 15 C -0.178 4.178 16 C -0.178 4.178 17 C -0.568 4.568 18 H 0.060 0.940 19 C -0.172 4.172 20 N -0.536 5.536 21 Si 0.771 3.229 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.203 1.203 25 C -0.137 4.137 26 C -0.149 4.149 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.150 0.850 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.247 0.753 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.059 0.941 44 H 0.081 0.919 45 H 0.035 0.965 46 H 0.035 0.965 47 H 0.081 0.919 48 H 0.059 0.941 49 H 0.070 0.930 50 H 0.143 0.857 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.994 6.304 -24.715 25.817 hybrid contribution -0.597 -0.192 1.503 1.628 sum 3.398 6.112 -23.212 24.243 Atomic orbital electron populations 1.21892 0.93675 1.02057 1.01919 1.19557 0.95710 0.95492 0.92291 1.21953 1.01361 0.94426 1.02244 1.21854 1.01038 1.00238 0.95975 1.20064 0.97157 0.94027 0.96549 1.21106 1.00526 0.94818 0.97741 1.21179 0.97279 1.00562 0.94603 1.19468 0.98837 0.94782 0.95182 1.20723 0.98473 1.04296 0.89878 1.21249 0.87402 0.78170 0.83958 1.90675 1.30362 1.42664 1.83246 1.46151 1.24931 1.54369 1.10940 1.21204 0.90914 0.98479 0.86838 1.18360 0.93934 0.92555 0.90158 1.21671 0.98025 0.98051 1.00090 1.21666 0.96979 0.98138 1.01047 1.21245 1.05603 1.33311 0.96689 0.93999 1.25449 0.96817 0.94832 1.00092 1.69895 1.25332 1.34729 1.23688 0.85837 0.79756 0.78074 0.79262 1.20329 1.20695 1.20340 1.21210 1.00603 0.94050 0.97793 1.21345 0.98563 1.00675 0.94285 0.93841 0.90839 0.92603 0.91940 0.91128 0.92930 0.92456 0.91081 0.92705 0.85008 0.85675 0.85612 0.85608 0.75266 0.94791 0.94785 0.94134 0.91889 0.96472 0.96462 0.91896 0.94135 0.92995 0.85663 0.84428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.29 71.98 0.60 -1.56 16 2 C -0.03 -0.48 0.85 -52.93 -0.05 -0.52 16 3 C -0.14 -1.92 7.13 71.98 0.51 -1.41 16 4 C -0.13 -1.70 8.29 71.98 0.60 -1.11 16 5 C -0.08 -1.63 4.76 -19.87 -0.09 -1.72 16 6 C -0.12 -2.73 8.71 22.27 0.19 -2.53 16 7 C -0.12 -2.87 9.70 22.27 0.22 -2.66 16 8 C -0.08 -2.07 4.37 -19.87 -0.09 -2.16 16 9 C -0.09 -2.12 5.83 29.10 0.17 -1.95 16 10 C 0.50 16.69 7.82 87.65 0.69 17.38 16 11 O -0.59 -25.10 16.03 -3.04 -0.05 -25.15 16 12 N -0.71 -24.03 4.96 -463.06 -2.30 -26.33 16 13 C 0.15 6.43 4.50 86.38 0.39 6.82 16 14 C 0.05 2.34 0.50 -52.93 -0.03 2.31 16 15 C -0.12 -5.32 8.08 71.98 0.58 -4.73 16 16 C -0.12 -5.31 8.08 71.98 0.58 -4.73 16 17 C -0.53 -28.27 8.01 25.60 0.21 -28.06 16 18 H 0.04 2.29 7.74 -2.91 -0.02 2.27 16 19 C 0.03 1.48 5.15 84.66 0.44 1.92 16 20 N -0.90 -47.85 9.35 21.45 0.20 -47.65 16 21 Si 0.94 42.86 29.54 68.60 2.03 44.88 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 25 C -0.12 -2.89 9.70 22.27 0.22 -2.67 16 26 C -0.13 -2.89 8.98 22.27 0.20 -2.69 16 27 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 0.87 7.39 -2.39 -0.02 0.86 16 30 H 0.06 0.79 7.51 -2.38 -0.02 0.77 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.05 0.78 7.51 -2.39 -0.02 0.76 16 33 H 0.06 0.73 7.39 -2.39 -0.02 0.71 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.13 2.39 7.10 -2.91 -0.02 2.37 16 37 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16 38 H 0.13 2.17 8.09 -2.38 -0.02 2.15 16 39 H 0.13 2.17 8.09 -2.39 -0.02 2.15 16 40 H 0.41 11.67 6.16 -92.70 -0.57 11.09 16 41 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.03 1.57 8.14 -2.39 -0.02 1.56 16 43 H 0.04 1.47 6.86 -2.39 -0.02 1.45 16 44 H 0.06 3.09 6.07 -2.38 -0.01 3.08 16 45 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.02 0.74 8.14 -2.39 -0.02 0.73 16 47 H 0.06 3.09 6.07 -2.39 -0.01 3.07 16 48 H 0.04 1.46 6.86 -2.39 -0.02 1.45 16 49 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 50 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16 51 H 0.14 2.50 5.89 -2.91 -0.02 2.48 16 Total: -1.00 -64.25 396.41 5.53 -58.71 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: 0.33 Total: 25.60 kcal Atomic # 6 Polarization: -35.40 SS G_CDS: 5.33 Total: -30.08 kcal Atomic # 7 Polarization: -71.89 SS G_CDS: -2.10 Total: -73.98 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.05 Total: -25.15 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -64.25 5.53 -58.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457992918.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.331 kcal (2) G-P(sol) polarization free energy of solvation -64.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds