Wall clock time and date at job start Tue Mar 31 2020 12:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47017 * 2 1 4 4 C 1.53003 * 109.46952 * 174.14243 * 3 2 1 5 5 C 1.53001 * 109.47101 * 186.36209 * 4 3 2 6 6 C 1.50693 * 109.46726 * 54.14368 * 3 2 1 7 7 O 1.21286 * 119.99586 * 239.99764 * 6 3 2 8 8 N 1.34780 * 120.00651 * 59.99933 * 6 3 2 9 9 C 1.46496 * 120.00340 * 179.97438 * 8 6 3 10 10 C 1.53001 * 109.47181 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.47033 * 300.00377 * 10 9 8 12 12 C 1.52996 * 109.47049 * 60.00433 * 10 9 8 13 13 C 1.50702 * 109.46936 * 180.02562 * 10 9 8 14 14 H 1.08000 * 120.00131 * 359.97438 * 13 10 9 15 15 C 1.37877 * 119.99513 * 180.02562 * 13 10 9 16 16 N 1.31514 * 120.00131 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99822 * 179.97438 * 15 13 10 18 18 H 1.48496 * 109.46819 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47050 * 119.99719 * 17 15 13 20 20 H 1.48495 * 109.47399 * 240.00029 * 17 15 13 21 21 C 1.50694 * 109.47160 * 294.14068 * 3 2 1 22 22 C 1.38243 * 119.99986 * 70.30266 * 21 3 2 23 23 C 1.38232 * 119.99921 * 179.97438 * 22 21 3 24 24 C 1.38234 * 120.00006 * 359.97438 * 23 22 21 25 25 C 1.38234 * 120.00296 * 0.27263 * 24 23 22 26 26 C 1.38234 * 120.00173 * 250.28076 * 21 3 2 27 27 H 1.08996 * 109.47252 * 69.03290 * 1 2 3 28 28 H 1.09002 * 109.47024 * 189.02992 * 1 2 3 29 29 H 1.08997 * 109.47215 * 309.03412 * 1 2 3 30 30 H 1.08999 * 109.47544 * 240.00218 * 2 1 3 31 31 H 1.08996 * 109.47386 * 120.00190 * 2 1 3 32 32 H 1.09007 * 109.46781 * 306.35833 * 4 3 2 33 33 H 1.08998 * 109.47298 * 66.35815 * 4 3 2 34 34 H 1.08996 * 109.46992 * 186.64252 * 5 4 3 35 35 H 1.09006 * 109.46460 * 306.64317 * 5 4 3 36 36 H 1.09000 * 109.46907 * 66.63871 * 5 4 3 37 37 H 0.97001 * 119.99333 * 0.02562 * 8 6 3 38 38 H 1.08998 * 109.47308 * 300.00637 * 9 8 6 39 39 H 1.09009 * 109.46640 * 60.00267 * 9 8 6 40 40 H 1.09006 * 109.47524 * 60.00263 * 11 10 9 41 41 H 1.09000 * 109.47093 * 179.97438 * 11 10 9 42 42 H 1.08996 * 109.47690 * 299.99905 * 11 10 9 43 43 H 1.08998 * 109.46823 * 59.99647 * 12 10 9 44 44 H 1.08997 * 109.47389 * 179.97438 * 12 10 9 45 45 H 1.09006 * 109.47058 * 300.00287 * 12 10 9 46 46 H 0.96999 * 119.99478 * 179.97438 * 16 15 13 47 47 H 1.07995 * 119.99810 * 359.97438 * 22 21 3 48 48 H 1.08000 * 120.00008 * 180.02562 * 23 22 21 49 49 H 1.07999 * 120.00247 * 179.97438 * 24 23 22 50 50 H 1.07996 * 120.00341 * 179.72635 * 25 24 23 51 51 H 1.07998 * 120.00023 * 0.02562 * 26 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5629 1.4451 0.1472 5 6 4.0575 2.8841 0.3065 6 6 1.4227 2.1935 1.1515 7 8 0.7410 3.1741 0.9402 8 7 1.6282 1.7755 2.4163 9 6 1.0286 2.5058 3.5357 10 6 1.4142 1.8279 4.8520 11 6 0.9032 0.3858 4.8517 12 6 2.9370 1.8294 4.9995 13 6 0.7968 2.5789 6.0035 14 1 0.1904 3.4526 5.8154 15 6 1.0070 2.1511 7.2973 16 7 1.7458 1.0875 7.5264 17 14 0.2423 3.0824 8.7248 18 1 -0.5381 4.2332 8.2036 19 1 -0.6586 2.1760 9.4812 20 1 1.3151 3.5778 9.6241 21 6 1.6596 2.1098 -1.2965 22 6 0.3366 2.4184 -1.5529 23 6 -0.0122 3.0310 -2.7420 24 6 0.9618 3.3355 -3.6744 25 6 2.2840 3.0223 -3.4202 26 6 2.6335 2.4138 -2.2292 27 1 -0.3633 0.3677 -0.9596 28 1 -0.3633 -1.0149 0.1613 29 1 -0.3633 0.6472 0.7982 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8439 0.8649 1.0263 33 1 4.0145 1.0018 -0.7403 34 1 5.1473 2.8973 0.2930 35 1 3.6765 3.4921 -0.5140 36 1 3.7009 3.2880 1.2541 37 1 2.1738 0.9914 2.5853 38 1 1.3922 3.5334 3.5356 39 1 -0.0565 2.5044 3.4309 40 1 1.3495 -0.1577 4.0188 41 1 1.1783 -0.0974 5.7893 42 1 -0.1817 0.3846 4.7467 43 1 3.3010 2.8568 4.9996 44 1 3.2118 1.3468 5.9374 45 1 3.3832 1.2860 4.1665 46 1 1.8939 0.7869 8.4367 47 1 -0.4242 2.1809 -0.8243 48 1 -1.0457 3.2724 -2.9422 49 1 0.6893 3.8137 -4.6036 50 1 3.0444 3.2562 -4.1506 51 1 3.6670 2.1727 -2.0289 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457999325.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:08 Heat of formation + Delta-G solvation = -28.582636 kcal Electronic energy + Delta-G solvation = -28397.494687 eV Core-core repulsion = 24875.168625 eV Total energy + Delta-G solvation = -3522.326062 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.90242 -38.53244 -36.47892 -35.73372 -33.22607 -32.79947 -30.89057 -30.43194 -30.01111 -27.23061 -25.73386 -25.58394 -24.87535 -23.22586 -22.23686 -22.07805 -21.41163 -19.13268 -18.79597 -17.35863 -16.26275 -15.88379 -15.57723 -15.37704 -14.88436 -14.72438 -14.62226 -14.12718 -13.95498 -13.60194 -13.32879 -12.99374 -12.91801 -12.72480 -12.48811 -12.43818 -12.32831 -12.19083 -11.83481 -11.67479 -11.38499 -11.32852 -11.19289 -11.07789 -10.90382 -10.87681 -10.66880 -10.49091 -10.45507 -10.37232 -10.20458 -9.63869 -9.44974 -9.14133 -8.78956 -8.72003 -8.59196 -8.44307 -8.28109 -6.02998 -4.12837 1.41924 1.52288 3.11191 3.26395 3.35128 3.39672 3.66516 3.99721 4.39710 4.46609 4.63474 4.85532 5.04018 5.04996 5.12457 5.18907 5.20704 5.23969 5.34493 5.40951 5.43932 5.57498 5.64326 5.83873 5.85216 5.90060 5.92463 6.02911 6.03107 6.13585 6.17003 6.23749 6.29644 6.33208 6.35830 6.50846 6.53943 6.60372 6.74125 6.79169 6.81796 6.93666 7.01390 7.06341 7.08968 7.35497 7.55135 7.68988 8.00446 8.07999 8.17238 8.38353 8.75146 8.88537 9.53147 10.98362 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.023058 B = 0.003312 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.017542 B = 8451.054363 C = 8583.750353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.107 4.107 3 C -0.041 4.041 4 C -0.114 4.114 5 C -0.164 4.164 6 C 0.522 3.478 7 O -0.544 6.544 8 N -0.714 5.714 9 C 0.133 3.867 10 C 0.057 3.943 11 C -0.130 4.130 12 C -0.130 4.130 13 C -0.505 4.505 14 H 0.057 0.943 15 C 0.066 3.934 16 N -0.886 5.886 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.056 4.056 22 C -0.080 4.080 23 C -0.129 4.129 24 C -0.124 4.124 25 C -0.131 4.131 26 C -0.117 4.117 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.396 0.604 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.006 0.994 41 H 0.085 0.915 42 H 0.026 0.974 43 H 0.026 0.974 44 H 0.085 0.915 45 H 0.006 0.994 46 H 0.259 0.741 47 H 0.128 0.872 48 H 0.117 0.883 49 H 0.115 0.885 50 H 0.117 0.883 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.040 -2.736 -18.824 19.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.145 4.145 3 C -0.045 4.045 4 C -0.151 4.151 5 C -0.221 4.221 6 C 0.307 3.693 7 O -0.422 6.422 8 N -0.365 5.365 9 C 0.011 3.989 10 C 0.056 3.944 11 C -0.187 4.187 12 C -0.187 4.187 13 C -0.544 4.544 14 H 0.076 0.924 15 C -0.135 4.135 16 N -0.524 5.524 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.056 4.056 22 C -0.098 4.098 23 C -0.147 4.147 24 C -0.142 4.142 25 C -0.149 4.149 26 C -0.135 4.135 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.231 0.769 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.024 0.976 41 H 0.104 0.896 42 H 0.045 0.955 43 H 0.045 0.955 44 H 0.104 0.896 45 H 0.025 0.975 46 H 0.069 0.931 47 H 0.146 0.854 48 H 0.136 0.864 49 H 0.134 0.866 50 H 0.135 0.865 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.604 -2.129 -18.775 19.074 hybrid contribution -0.138 0.197 0.974 1.003 sum 2.466 -1.932 -17.801 18.075 Atomic orbital electron populations 1.22080 0.95350 1.02153 1.02608 1.21554 0.96777 0.93270 1.02872 1.19910 0.96620 0.95855 0.92072 1.21641 0.92316 0.98464 1.02700 1.21992 1.00798 0.96147 1.03134 1.20051 0.80685 0.84637 0.83936 1.90680 1.39848 1.27010 1.84710 1.46273 1.52481 1.31881 1.05818 1.21689 0.96679 0.95112 0.85462 1.18341 0.93202 0.92959 0.89889 1.21818 0.98116 0.98060 1.00738 1.21819 0.97142 0.98875 1.00915 1.21032 1.30983 1.12041 0.90297 0.92446 1.24874 0.94988 0.94965 0.98665 1.69812 1.38626 1.23810 1.20199 0.86534 0.79092 0.79983 0.82399 1.19767 1.21070 1.21066 1.19275 0.93588 0.98847 0.93905 1.21214 0.96214 0.96261 0.96093 1.21121 0.99288 0.99848 0.94432 1.21085 0.93343 1.00508 0.99268 1.21026 0.96215 1.00403 0.97272 1.21173 0.99273 0.99351 0.93721 0.91790 0.92328 0.92071 0.90886 0.90909 0.90911 0.90661 0.92428 0.91705 0.92141 0.76851 0.92892 0.92885 0.97551 0.89644 0.95500 0.95515 0.89631 0.97550 0.93086 0.85386 0.86447 0.86647 0.86496 0.85578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 8.36 37.16 0.31 -1.69 16 2 C -0.11 -1.21 4.84 -26.73 -0.13 -1.34 16 3 C -0.04 -0.54 0.39 -156.81 -0.06 -0.60 16 4 C -0.11 -1.27 4.36 -26.73 -0.12 -1.39 16 5 C -0.16 -2.03 8.80 37.16 0.33 -1.70 16 6 C 0.52 8.75 3.12 -10.99 -0.03 8.71 16 7 O -0.54 -11.04 14.29 5.55 0.08 -10.96 16 8 N -0.71 -12.35 4.77 -60.29 -0.29 -12.64 16 9 C 0.13 2.79 4.50 -4.04 -0.02 2.77 16 10 C 0.06 1.29 0.50 -155.66 -0.08 1.22 16 11 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 12 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 13 C -0.50 -13.14 8.01 -34.44 -0.28 -13.42 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 15 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 16 N -0.89 -23.42 9.35 55.43 0.52 -22.91 16 17 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.06 -0.74 4.10 -104.62 -0.43 -1.17 16 22 C -0.08 -1.12 6.32 -39.58 -0.25 -1.37 16 23 C -0.13 -1.59 10.05 -39.58 -0.40 -1.99 16 24 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 25 C -0.13 -1.43 10.05 -39.58 -0.40 -1.82 16 26 C -0.12 -1.37 7.47 -39.58 -0.30 -1.67 16 27 H 0.06 0.75 5.64 -51.93 -0.29 0.46 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.89 6.62 -51.93 -0.34 0.54 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.79 7.73 -51.93 -0.40 0.38 16 32 H 0.07 0.78 7.74 -51.93 -0.40 0.38 16 33 H 0.07 0.69 6.60 -51.93 -0.34 0.35 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.84 5.72 -51.93 -0.30 0.54 16 36 H 0.06 0.90 7.32 -51.93 -0.38 0.52 16 37 H 0.40 6.30 5.24 -40.82 -0.21 6.09 16 38 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.05 1.17 8.14 -51.92 -0.42 0.75 16 40 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 41 H 0.08 2.10 6.07 -51.93 -0.32 1.79 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 45 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 46 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 47 H 0.13 1.92 5.30 -52.49 -0.28 1.65 16 48 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 49 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 50 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 51 H 0.13 1.26 5.22 -52.49 -0.27 0.98 16 LS Contribution 377.70 15.07 5.69 5.69 Total: -1.00 -28.31 377.70 -9.09 -37.40 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -8.34 Total: 8.51 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: -1.74 Total: -20.75 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.23 Total: -35.54 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.08 Total: -10.96 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.31 -9.09 -37.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457999325.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.822 kcal (2) G-P(sol) polarization free energy of solvation -28.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds