Wall clock time and date at job start Tue Mar 31 2020 12:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47114 * 2 1 4 4 C 1.52999 * 113.25643 * 291.04895 * 3 2 1 5 5 C 1.53004 * 109.47203 * 307.43149 * 4 3 2 6 6 C 1.53509 * 114.16694 * 63.99655 * 3 2 1 7 7 N 1.47482 * 87.93005 * 139.67387 * 6 3 2 8 8 C 1.46901 * 110.99973 * 221.29489 * 7 6 3 9 9 C 1.50700 * 109.47006 * 169.99738 * 8 7 6 10 10 C 1.38282 * 119.97296 * 90.00714 * 9 8 7 11 11 C 1.38242 * 120.11525 * 179.97438 * 10 9 8 12 12 C 1.38164 * 120.05534 * 0.02562 * 11 10 9 13 13 C 1.38714 * 119.94332 * 359.97438 * 12 11 10 14 14 O 1.35902 * 120.05639 * 180.02562 * 13 12 11 15 15 C 1.42904 * 117.00036 * 359.97438 * 14 13 12 16 16 C 1.52997 * 109.47192 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47114 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00032 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00169 * 180.02562 * 17 16 15 20 20 N 1.31505 * 120.00382 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 119.99646 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47159 * 90.00300 * 21 19 17 23 23 H 1.48506 * 109.46967 * 209.99740 * 21 19 17 24 24 H 1.48495 * 109.47196 * 329.99775 * 21 19 17 25 25 C 1.38122 * 119.97280 * 270.29527 * 9 8 7 26 26 C 1.47478 * 87.83653 * 332.98498 * 7 6 3 27 27 H 1.09000 * 109.47005 * 304.31573 * 1 2 3 28 28 H 1.08998 * 109.46927 * 64.31542 * 1 2 3 29 29 H 1.09002 * 109.46655 * 184.31223 * 1 2 3 30 30 H 1.09002 * 109.47167 * 240.00071 * 2 1 3 31 31 H 1.09001 * 109.47517 * 119.99994 * 2 1 3 32 32 H 1.08998 * 109.47223 * 67.43233 * 4 3 2 33 33 H 1.09005 * 109.47096 * 187.43539 * 4 3 2 34 34 H 1.08997 * 109.46999 * 306.96001 * 5 4 3 35 35 H 1.09004 * 109.47187 * 66.95679 * 5 4 3 36 36 H 1.08990 * 109.47338 * 186.95914 * 5 4 3 37 37 H 1.08994 * 113.48224 * 24.90846 * 6 3 2 38 38 H 1.08997 * 113.47829 * 254.43197 * 6 3 2 39 39 H 1.09001 * 109.47224 * 50.00111 * 8 7 6 40 40 H 1.08991 * 109.47582 * 290.00117 * 8 7 6 41 41 H 1.08005 * 119.94542 * 359.97438 * 10 9 8 42 42 H 1.08000 * 119.97447 * 180.02562 * 11 10 9 43 43 H 1.08001 * 120.03007 * 179.97438 * 12 11 10 44 44 H 1.08994 * 109.47338 * 300.00650 * 15 14 13 45 45 H 1.09009 * 109.46475 * 60.00090 * 15 14 13 46 46 H 1.09004 * 109.47214 * 300.00345 * 16 15 14 47 47 H 1.09000 * 109.46657 * 60.00109 * 16 15 14 48 48 H 0.97001 * 120.00239 * 179.97438 * 20 19 17 49 49 H 1.08001 * 120.02851 * 0.02787 * 25 9 8 50 50 H 1.09007 * 113.47605 * 141.77358 * 26 7 6 51 51 H 1.08998 * 113.48230 * 272.24533 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.7654 2.1804 -1.3119 5 6 2.2960 1.3520 -2.4837 6 6 1.6706 2.2398 1.2588 7 7 3.0235 2.8256 1.2198 8 6 3.5999 2.9095 2.5684 9 6 5.0579 3.2776 2.4695 10 6 5.4366 4.6075 2.4759 11 6 6.7733 4.9485 2.3858 12 6 7.7344 3.9606 2.2887 13 6 7.3571 2.6258 2.2821 14 8 8.3006 1.6522 2.1872 15 6 9.6626 2.0753 2.0968 16 6 10.5721 0.8489 1.9986 17 6 12.0084 1.2951 1.9040 18 1 12.2485 2.3480 1.9134 19 6 13.0159 0.3591 1.8053 20 7 14.2694 0.7483 1.7232 21 14 12.6004 -1.4621 1.7883 22 1 12.3877 -1.9083 0.3880 23 1 13.7206 -2.2310 2.3879 24 1 11.3630 -1.6949 2.5755 25 6 6.0143 2.2864 2.3666 26 6 3.4725 1.6028 0.5284 27 1 -0.3633 0.5794 0.8488 28 1 -0.3633 0.4454 -0.9261 29 1 -0.3633 -1.0248 0.0773 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.6917 2.3279 -1.4279 33 1 2.2656 3.1488 -1.2957 34 1 3.3414 1.0997 -2.3063 35 1 1.7118 0.4363 -2.5754 36 1 2.2128 1.9297 -3.4042 37 1 1.4937 1.6135 2.1331 38 1 0.8770 2.9685 1.0939 39 1 3.5017 1.9448 3.0662 40 1 3.0713 3.6702 3.1428 41 1 4.6869 5.3813 2.5513 42 1 7.0666 5.9879 2.3914 43 1 8.7785 4.2275 2.2180 44 1 9.7921 2.6962 1.2104 45 1 9.9238 2.6508 2.9849 46 1 10.4424 0.2284 2.8853 47 1 10.3108 0.2731 1.1108 48 1 14.9782 0.0898 1.6542 49 1 5.7177 1.2480 2.3565 50 1 4.2058 1.7917 -0.2557 51 1 3.7763 0.8064 1.2077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459595319.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:28 Heat of formation + Delta-G solvation = -1.922294 kcal Electronic energy + Delta-G solvation = -26253.929162 eV Core-core repulsion = 22732.759179 eV Total energy + Delta-G solvation = -3521.169982 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.12338 -39.72142 -37.40507 -35.14488 -33.36249 -31.88513 -31.68052 -31.10135 -29.51769 -28.17159 -26.29365 -25.42505 -24.74905 -23.60581 -22.38427 -22.16872 -21.12244 -20.11579 -18.33360 -17.69067 -16.66292 -16.24526 -16.09580 -15.72042 -15.56481 -15.42749 -15.13255 -14.84881 -14.20898 -14.08602 -13.86122 -13.39061 -13.29757 -13.13654 -12.96631 -12.78801 -12.73424 -12.51910 -12.27453 -12.11817 -11.83382 -11.67313 -11.53463 -11.46359 -11.27479 -11.23561 -10.84416 -10.80655 -10.66005 -10.45336 -10.31359 -10.19336 -9.99412 -9.82869 -9.35857 -9.14154 -8.69742 -8.63593 -7.89387 -6.14785 -4.15758 1.41007 1.65737 3.27277 3.34514 3.39860 3.66264 3.76467 3.96405 4.07711 4.37730 4.38977 4.62515 4.70098 4.74652 4.90022 4.99091 5.03843 5.07464 5.13299 5.19274 5.23531 5.25355 5.28171 5.36108 5.37866 5.43312 5.47844 5.49066 5.59947 5.61793 5.65090 5.70557 5.74786 5.81622 5.90019 5.91045 5.94642 5.98354 6.02363 6.10319 6.13833 6.21166 6.40565 6.51831 6.63257 6.66584 6.83442 6.89159 7.10252 7.21542 7.61168 7.91304 8.37454 8.85887 9.45442 10.97730 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014105 B = 0.002580 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.619002 B =10849.832171 C =12077.181559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.084 4.084 4 C -0.091 4.091 5 C -0.153 4.153 6 C 0.005 3.995 7 N -0.461 5.461 8 C 0.062 3.938 9 C -0.045 4.045 10 C -0.149 4.149 11 C -0.080 4.080 12 C -0.210 4.210 13 C 0.144 3.856 14 O -0.321 6.321 15 C 0.073 3.927 16 C -0.008 4.008 17 C -0.527 4.527 18 H 0.074 0.926 19 C 0.072 3.928 20 N -0.897 5.897 21 Si 0.881 3.119 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.263 1.263 25 C -0.155 4.155 26 C 0.008 3.992 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.050 0.950 40 H 0.085 0.915 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.131 0.869 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.027 0.973 47 H 0.023 0.977 48 H 0.266 0.734 49 H 0.122 0.878 50 H 0.085 0.915 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.487 3.196 -2.206 29.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C -0.085 4.085 4 C -0.129 4.129 5 C -0.210 4.210 6 C -0.124 4.124 7 N -0.183 5.183 8 C -0.066 4.066 9 C -0.046 4.046 10 C -0.168 4.168 11 C -0.098 4.098 12 C -0.229 4.229 13 C 0.097 3.903 14 O -0.234 6.234 15 C -0.001 4.001 16 C -0.046 4.046 17 C -0.565 4.565 18 H 0.093 0.907 19 C -0.130 4.130 20 N -0.535 5.535 21 Si 0.707 3.293 22 H -0.200 1.200 23 H -0.212 1.212 24 H -0.188 1.188 25 C -0.174 4.174 26 C -0.121 4.121 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.068 0.932 40 H 0.103 0.897 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.148 0.852 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.045 0.955 47 H 0.041 0.959 48 H 0.076 0.924 49 H 0.140 0.860 50 H 0.104 0.896 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -29.169 3.600 -2.475 29.494 hybrid contribution 0.196 -1.443 0.527 1.548 sum -28.973 2.157 -1.948 29.118 Atomic orbital electron populations 1.21727 0.95606 1.01400 1.01902 1.21516 0.96099 0.94982 1.02345 1.22058 0.96067 0.95233 0.95134 1.21174 1.00835 0.98941 0.91919 1.21791 1.01468 0.99979 0.97761 1.23937 0.93746 0.97331 0.97402 1.69012 1.03234 1.32154 1.13857 1.21575 0.92156 1.01062 0.91791 1.19292 0.93583 0.93057 0.98665 1.20763 0.95783 0.95303 1.04980 1.20902 0.92624 0.98806 0.97485 1.21407 1.00904 0.92267 1.08277 1.19085 0.89453 0.87878 0.93847 1.86113 1.17284 1.33161 1.86865 1.23072 0.76288 1.00379 1.00381 1.19580 0.94101 0.93105 0.97806 1.20838 0.88093 0.95564 1.51978 0.90747 1.24933 0.94762 0.99198 0.94118 1.69889 0.99259 1.34553 1.49845 0.86758 0.78458 0.85147 0.78899 1.20043 1.21167 1.18777 1.20226 0.89895 0.99501 1.07759 1.23963 0.97093 0.92094 0.98911 0.92760 0.92597 0.92926 0.91149 0.92093 0.91935 0.90820 0.92475 0.92728 0.92824 0.91412 0.89868 0.93215 0.89708 0.86380 0.86072 0.85150 0.92541 0.92532 0.95456 0.95872 0.92436 0.86037 0.89631 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.62 37.16 0.36 -0.52 16 2 C -0.11 -0.77 5.15 -26.73 -0.14 -0.91 16 3 C -0.08 -0.65 0.65 -153.98 -0.10 -0.75 16 4 C -0.09 -0.70 5.13 -26.73 -0.14 -0.84 16 5 C -0.15 -1.13 9.19 37.16 0.34 -0.79 16 6 C 0.00 0.04 6.05 -7.55 -0.05 -0.01 16 7 N -0.46 -4.62 6.19 -246.05 -1.52 -6.14 16 8 C 0.06 0.63 4.97 -4.98 -0.02 0.61 16 9 C -0.05 -0.58 5.18 -104.65 -0.54 -1.12 16 10 C -0.15 -1.87 9.70 -39.56 -0.38 -2.26 16 11 C -0.08 -1.06 10.04 -39.61 -0.40 -1.46 16 12 C -0.21 -3.28 9.04 -39.43 -0.36 -3.64 16 13 C 0.14 2.46 6.69 -39.21 -0.26 2.20 16 14 O -0.32 -6.35 10.14 -19.43 -0.20 -6.55 16 15 C 0.07 1.52 4.68 37.16 0.17 1.69 16 16 C -0.01 -0.21 4.41 -27.89 -0.12 -0.33 16 17 C -0.53 -14.89 9.66 -34.44 -0.33 -15.22 16 18 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 19 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 20 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 21 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 25 C -0.15 -2.28 9.04 -39.43 -0.36 -2.64 16 26 C 0.01 0.08 5.88 -7.54 -0.04 0.04 16 27 H 0.05 0.31 7.47 -51.93 -0.39 -0.08 16 28 H 0.05 0.32 7.41 -51.93 -0.38 -0.06 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.49 6.40 -51.93 -0.33 0.16 16 31 H 0.06 0.43 7.98 -51.93 -0.41 0.02 16 32 H 0.06 0.43 7.51 -51.93 -0.39 0.04 16 33 H 0.07 0.67 7.95 -51.93 -0.41 0.26 16 34 H 0.06 0.47 7.81 -51.93 -0.41 0.07 16 35 H 0.05 0.37 6.87 -51.93 -0.36 0.01 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.49 7.73 -51.93 -0.40 0.09 16 38 H 0.08 0.62 8.11 -51.93 -0.42 0.20 16 39 H 0.05 0.48 7.51 -51.93 -0.39 0.09 16 40 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 41 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 42 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 43 H 0.13 2.03 6.30 -52.49 -0.33 1.70 16 44 H 0.06 1.14 7.66 -51.93 -0.40 0.74 16 45 H 0.06 1.14 7.66 -51.92 -0.40 0.74 16 46 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 47 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 48 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 49 H 0.12 1.69 7.68 -52.49 -0.40 1.29 16 50 H 0.09 0.97 7.86 -51.93 -0.41 0.56 16 51 H 0.07 0.69 7.17 -51.93 -0.37 0.32 16 LS Contribution 397.69 15.07 5.99 5.99 Total: -1.00 -30.22 397.69 -11.16 -41.38 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -9.07 Total: -1.14 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: -2.47 Total: -23.96 kcal Atomic # 7 Polarization: -31.91 SS G_CDS: -0.75 Total: -32.66 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.20 Total: -6.55 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.22 -11.16 -41.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459595319.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.461 kcal (2) G-P(sol) polarization free energy of solvation -30.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds