Wall clock time and date at job start Tue Mar 31 2020 12:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47114 * 2 1 4 4 C 1.52999 * 113.25643 * 291.04895 * 3 2 1 5 5 C 1.53004 * 109.47203 * 307.43149 * 4 3 2 6 6 C 1.53509 * 114.16694 * 63.99655 * 3 2 1 7 7 N 1.47482 * 87.93005 * 139.67387 * 6 3 2 8 8 C 1.46901 * 110.99973 * 221.29489 * 7 6 3 9 9 C 1.50700 * 109.47006 * 169.99738 * 8 7 6 10 10 C 1.38282 * 119.97296 * 90.00714 * 9 8 7 11 11 C 1.38242 * 120.11525 * 179.97438 * 10 9 8 12 12 C 1.38164 * 120.05534 * 0.02562 * 11 10 9 13 13 C 1.38714 * 119.94332 * 359.97438 * 12 11 10 14 14 O 1.35902 * 120.05639 * 180.02562 * 13 12 11 15 15 C 1.42904 * 117.00036 * 359.97438 * 14 13 12 16 16 C 1.52997 * 109.47192 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47114 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00032 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00169 * 180.02562 * 17 16 15 20 20 N 1.31505 * 120.00382 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 119.99646 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47159 * 90.00300 * 21 19 17 23 23 H 1.48506 * 109.46967 * 209.99740 * 21 19 17 24 24 H 1.48495 * 109.47196 * 329.99775 * 21 19 17 25 25 C 1.38122 * 119.97280 * 270.29527 * 9 8 7 26 26 C 1.47478 * 87.83653 * 332.98498 * 7 6 3 27 27 H 1.09000 * 109.47005 * 304.31573 * 1 2 3 28 28 H 1.08998 * 109.46927 * 64.31542 * 1 2 3 29 29 H 1.09002 * 109.46655 * 184.31223 * 1 2 3 30 30 H 1.09002 * 109.47167 * 240.00071 * 2 1 3 31 31 H 1.09001 * 109.47517 * 119.99994 * 2 1 3 32 32 H 1.08998 * 109.47223 * 67.43233 * 4 3 2 33 33 H 1.09005 * 109.47096 * 187.43539 * 4 3 2 34 34 H 1.08997 * 109.46999 * 306.96001 * 5 4 3 35 35 H 1.09004 * 109.47187 * 66.95679 * 5 4 3 36 36 H 1.08990 * 109.47338 * 186.95914 * 5 4 3 37 37 H 1.08994 * 113.48224 * 24.90846 * 6 3 2 38 38 H 1.08997 * 113.47829 * 254.43197 * 6 3 2 39 39 H 1.09001 * 109.47224 * 50.00111 * 8 7 6 40 40 H 1.08991 * 109.47582 * 290.00117 * 8 7 6 41 41 H 1.08005 * 119.94542 * 359.97438 * 10 9 8 42 42 H 1.08000 * 119.97447 * 180.02562 * 11 10 9 43 43 H 1.08001 * 120.03007 * 179.97438 * 12 11 10 44 44 H 1.08994 * 109.47338 * 300.00650 * 15 14 13 45 45 H 1.09009 * 109.46475 * 60.00090 * 15 14 13 46 46 H 1.09004 * 109.47214 * 300.00345 * 16 15 14 47 47 H 1.09000 * 109.46657 * 60.00109 * 16 15 14 48 48 H 0.97001 * 120.00239 * 179.97438 * 20 19 17 49 49 H 1.08001 * 120.02851 * 0.02787 * 25 9 8 50 50 H 1.09007 * 113.47605 * 141.77358 * 26 7 6 51 51 H 1.08998 * 113.48230 * 272.24533 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.7654 2.1804 -1.3119 5 6 2.2960 1.3520 -2.4837 6 6 1.6706 2.2398 1.2588 7 7 3.0235 2.8256 1.2198 8 6 3.5999 2.9095 2.5684 9 6 5.0579 3.2776 2.4695 10 6 5.4366 4.6075 2.4759 11 6 6.7733 4.9485 2.3858 12 6 7.7344 3.9606 2.2887 13 6 7.3571 2.6258 2.2821 14 8 8.3006 1.6522 2.1872 15 6 9.6626 2.0753 2.0968 16 6 10.5721 0.8489 1.9986 17 6 12.0084 1.2951 1.9040 18 1 12.2485 2.3480 1.9134 19 6 13.0159 0.3591 1.8053 20 7 14.2694 0.7483 1.7232 21 14 12.6004 -1.4621 1.7883 22 1 12.3877 -1.9083 0.3880 23 1 13.7206 -2.2310 2.3879 24 1 11.3630 -1.6949 2.5755 25 6 6.0143 2.2864 2.3666 26 6 3.4725 1.6028 0.5284 27 1 -0.3633 0.5794 0.8488 28 1 -0.3633 0.4454 -0.9261 29 1 -0.3633 -1.0248 0.0773 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.6917 2.3279 -1.4279 33 1 2.2656 3.1488 -1.2957 34 1 3.3414 1.0997 -2.3063 35 1 1.7118 0.4363 -2.5754 36 1 2.2128 1.9297 -3.4042 37 1 1.4937 1.6135 2.1331 38 1 0.8770 2.9685 1.0939 39 1 3.5017 1.9448 3.0662 40 1 3.0713 3.6702 3.1428 41 1 4.6869 5.3813 2.5513 42 1 7.0666 5.9879 2.3914 43 1 8.7785 4.2275 2.2180 44 1 9.7921 2.6962 1.2104 45 1 9.9238 2.6508 2.9849 46 1 10.4424 0.2284 2.8853 47 1 10.3108 0.2731 1.1108 48 1 14.9782 0.0898 1.6542 49 1 5.7177 1.2480 2.3565 50 1 4.2058 1.7917 -0.2557 51 1 3.7763 0.8064 1.2077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459595319.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:27 Heat of formation + Delta-G solvation = -18.769187 kcal Electronic energy + Delta-G solvation = -26254.659698 eV Core-core repulsion = 22732.759179 eV Total energy + Delta-G solvation = -3521.900519 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.86313 -40.94895 -38.66141 -35.88936 -35.41498 -32.96061 -32.82084 -32.23692 -30.86027 -29.03206 -27.22384 -26.90179 -25.68534 -24.19166 -23.53648 -23.28625 -22.44276 -21.43989 -19.34356 -18.95639 -18.39653 -17.10007 -17.05207 -16.92198 -16.79783 -16.56741 -16.31221 -15.87920 -15.54366 -15.09142 -14.79059 -14.62942 -14.46603 -14.23758 -14.08960 -13.83639 -13.72253 -13.48485 -13.23300 -13.11976 -12.85651 -12.75164 -12.64650 -12.56440 -12.38435 -12.14470 -12.03453 -11.95814 -11.85816 -11.71404 -11.59312 -11.44569 -11.36649 -11.11878 -10.96666 -10.84032 -9.96588 -9.68728 -9.13122 -8.37182 -6.44238 0.31144 0.50659 1.34183 1.35489 1.48321 2.28974 2.31094 2.72055 2.97616 3.20410 3.34197 3.72571 3.76322 3.86532 4.02973 4.11902 4.14008 4.16818 4.18188 4.27967 4.37393 4.43527 4.46958 4.48830 4.53727 4.58825 4.62859 4.63306 4.70433 4.71900 4.75635 4.83367 4.89215 4.96084 5.04867 5.08894 5.10085 5.17904 5.26355 5.27408 5.28441 5.37342 5.38574 5.40267 5.44764 5.46789 5.52680 5.61559 5.63818 5.87047 6.10109 6.13657 6.49393 6.61193 7.20984 8.78545 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014105 B = 0.002580 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.619002 B =10849.832171 C =12077.181559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 C -0.076 4.076 4 C -0.088 4.088 5 C -0.151 4.151 6 C 0.011 3.989 7 N -0.474 5.474 8 C 0.065 3.935 9 C -0.042 4.042 10 C -0.143 4.143 11 C -0.080 4.080 12 C -0.225 4.225 13 C 0.109 3.891 14 O -0.336 6.336 15 C 0.088 3.912 16 C -0.005 4.005 17 C -0.538 4.538 18 H 0.041 0.959 19 C 0.014 3.986 20 N -0.942 5.942 21 Si 0.949 3.051 22 H -0.264 1.264 23 H -0.278 1.278 24 H -0.251 1.251 25 C -0.158 4.158 26 C 0.003 3.997 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.042 0.958 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.056 0.944 40 H 0.102 0.898 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.123 0.877 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.027 0.973 47 H 0.026 0.974 48 H 0.271 0.729 49 H 0.124 0.876 50 H 0.063 0.937 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.781 2.821 -1.958 32.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.148 4.148 3 C -0.076 4.076 4 C -0.126 4.126 5 C -0.208 4.208 6 C -0.117 4.117 7 N -0.195 5.195 8 C -0.063 4.063 9 C -0.042 4.042 10 C -0.161 4.161 11 C -0.098 4.098 12 C -0.244 4.244 13 C 0.064 3.936 14 O -0.251 6.251 15 C 0.013 3.987 16 C -0.043 4.043 17 C -0.576 4.576 18 H 0.060 0.940 19 C -0.184 4.184 20 N -0.581 5.581 21 Si 0.772 3.228 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.175 1.175 25 C -0.178 4.178 26 C -0.126 4.126 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.074 0.926 40 H 0.121 0.879 41 H 0.164 0.836 42 H 0.165 0.835 43 H 0.141 0.859 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.046 0.954 47 H 0.044 0.956 48 H 0.080 0.920 49 H 0.142 0.858 50 H 0.082 0.918 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -32.490 3.241 -2.226 32.727 hybrid contribution 1.142 -1.181 0.440 1.701 sum -31.347 2.060 -1.786 31.466 Atomic orbital electron populations 1.21705 0.94518 1.01852 1.02252 1.21498 0.96967 0.94135 1.02158 1.22014 0.94412 0.95928 0.95257 1.21142 1.01405 0.98089 0.91919 1.21776 1.00722 1.00447 0.97902 1.23959 0.92719 0.97453 0.97616 1.69001 1.04458 1.32392 1.13676 1.21612 0.90423 1.02005 0.92272 1.19623 0.94705 0.92818 0.97089 1.21156 0.96041 0.95902 1.03031 1.21221 0.92580 0.99561 0.96418 1.21490 1.01271 0.92403 1.09201 1.19401 0.89676 0.88048 0.96513 1.86023 1.16754 1.34332 1.87977 1.22654 0.77068 0.98524 1.00433 1.19435 0.92606 0.94486 0.97733 1.21097 0.90469 0.94283 1.51722 0.94041 1.25881 0.94469 1.04486 0.93605 1.70020 1.00488 1.36475 1.51119 0.85673 0.78789 0.78744 0.79588 1.18908 1.20334 1.17479 1.20380 0.89310 1.00351 1.07731 1.23952 0.97885 0.92172 0.98559 0.92316 0.92304 0.92490 0.91427 0.92286 0.90610 0.92384 0.93881 0.91816 0.92493 0.90393 0.88943 0.92572 0.87944 0.83596 0.83482 0.85921 0.92615 0.92511 0.95423 0.95568 0.92042 0.85792 0.91838 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.62 71.98 0.69 -0.67 16 2 C -0.11 -1.31 5.15 30.60 0.16 -1.16 16 3 C -0.08 -1.05 0.65 -51.84 -0.03 -1.08 16 4 C -0.09 -1.22 5.13 30.60 0.16 -1.07 16 5 C -0.15 -2.10 9.19 71.98 0.66 -1.44 16 6 C 0.01 0.14 6.05 83.57 0.51 0.65 16 7 N -0.47 -8.54 6.19 -932.36 -5.77 -14.31 16 8 C 0.06 1.15 4.97 85.56 0.43 1.58 16 9 C -0.04 -0.99 5.18 -19.88 -0.10 -1.10 16 10 C -0.14 -3.22 9.70 22.28 0.22 -3.00 16 11 C -0.08 -1.99 10.04 22.25 0.22 -1.77 16 12 C -0.22 -7.05 9.04 22.37 0.20 -6.85 16 13 C 0.11 3.76 6.69 22.51 0.15 3.91 16 14 O -0.34 -13.57 10.14 -92.45 -0.94 -14.51 16 15 C 0.09 3.75 4.68 71.98 0.34 4.09 16 16 C -0.01 -0.25 4.41 29.85 0.13 -0.12 16 17 C -0.54 -31.26 9.66 25.60 0.25 -31.01 16 18 H 0.04 2.60 7.99 -2.91 -0.02 2.58 16 19 C 0.01 0.81 5.47 84.66 0.46 1.28 16 20 N -0.94 -58.54 13.96 21.45 0.30 -58.24 16 21 Si 0.95 44.51 27.47 68.60 1.88 46.39 16 22 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 24 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 25 C -0.16 -4.61 9.04 22.37 0.20 -4.41 16 26 C 0.00 0.06 5.88 83.58 0.49 0.55 16 27 H 0.06 0.50 7.47 -2.39 -0.02 0.49 16 28 H 0.06 0.52 7.41 -2.39 -0.02 0.50 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 0.85 6.40 -2.39 -0.02 0.84 16 31 H 0.06 0.74 7.98 -2.39 -0.02 0.72 16 32 H 0.08 0.86 7.51 -2.39 -0.02 0.84 16 33 H 0.06 1.00 7.95 -2.38 -0.02 0.98 16 34 H 0.04 0.71 7.81 -2.39 -0.02 0.69 16 35 H 0.06 0.76 6.87 -2.39 -0.02 0.74 16 36 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.08 0.89 7.73 -2.39 -0.02 0.88 16 38 H 0.09 1.08 8.11 -2.39 -0.02 1.06 16 39 H 0.06 0.94 7.51 -2.39 -0.02 0.92 16 40 H 0.10 1.49 8.08 -2.39 -0.02 1.47 16 41 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 42 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 43 H 0.12 3.94 6.30 -2.91 -0.02 3.92 16 44 H 0.06 2.34 7.66 -2.39 -0.02 2.32 16 45 H 0.06 2.37 7.66 -2.38 -0.02 2.35 16 46 H 0.03 1.35 7.20 -2.38 -0.02 1.33 16 47 H 0.03 1.26 7.57 -2.39 -0.02 1.24 16 48 H 0.27 15.60 8.31 -92.71 -0.77 14.82 16 49 H 0.12 3.44 7.68 -2.91 -0.02 3.42 16 50 H 0.06 1.46 7.86 -2.38 -0.02 1.44 16 51 H 0.07 1.28 7.17 -2.39 -0.02 1.26 16 Total: -1.00 -66.00 397.69 1.42 -64.58 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.82 Total: 17.72 kcal Atomic # 6 Polarization: -46.75 SS G_CDS: 5.13 Total: -41.62 kcal Atomic # 7 Polarization: -67.09 SS G_CDS: -5.47 Total: -72.56 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.94 Total: -14.51 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.88 Total: 46.39 kcal Total: -66.00 1.42 -64.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459595319.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.810 kcal (2) G-P(sol) polarization free energy of solvation -66.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds