Wall clock time and date at job start Tue Mar 31 2020 12:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 113.99974 * 2 1 4 4 C 1.50701 * 109.46923 * 180.02562 * 3 2 1 5 5 C 1.37989 * 120.07540 * 0.02562 * 4 3 2 6 6 C 1.38327 * 120.14268 * 180.02562 * 5 4 3 7 7 C 1.38360 * 120.28717 * 359.97438 * 6 5 4 8 8 C 1.37963 * 120.14107 * 359.74383 * 7 6 5 9 9 C 1.39513 * 120.07112 * 180.02562 * 4 3 2 10 10 C 1.47821 * 120.14169 * 359.97438 * 9 4 3 11 11 C 1.32565 * 120.00288 * 138.27210 * 10 9 4 12 12 C 1.50693 * 120.00311 * 173.85626 * 11 10 9 13 13 C 1.50702 * 119.99736 * 353.85526 * 11 10 9 14 14 N 1.46900 * 109.47100 * 98.01843 * 13 11 10 15 15 C 1.46898 * 110.99866 * 180.02562 * 14 13 11 16 16 C 1.53003 * 109.47006 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.47015 * 299.99767 * 16 15 14 18 18 C 1.53002 * 109.47159 * 59.99676 * 16 15 14 19 19 C 1.50698 * 109.47017 * 179.97438 * 16 15 14 20 20 H 1.07998 * 120.00030 * 359.97438 * 19 16 15 21 21 C 1.37878 * 119.99793 * 179.97438 * 19 16 15 22 22 N 1.31512 * 120.00014 * 359.97438 * 21 19 16 23 23 Si 1.86797 * 119.99977 * 179.97438 * 21 19 16 24 24 H 1.48504 * 109.47147 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47222 * 119.99986 * 23 21 19 26 26 H 1.48494 * 109.47493 * 240.00086 * 23 21 19 27 27 H 1.09003 * 109.47364 * 60.00310 * 1 2 3 28 28 H 1.09002 * 109.46794 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47386 * 300.00015 * 1 2 3 30 30 H 1.08993 * 109.46947 * 59.99960 * 3 2 1 31 31 H 1.09000 * 109.46700 * 299.99874 * 3 2 1 32 32 H 1.08004 * 119.93013 * 359.97438 * 5 4 3 33 33 H 1.08000 * 119.85200 * 179.97438 * 6 5 4 34 34 H 1.07993 * 119.93074 * 179.97438 * 7 6 5 35 35 H 1.07996 * 120.07341 * 180.27623 * 8 7 6 36 36 H 1.07998 * 119.99673 * 317.99556 * 10 9 4 37 37 H 1.09000 * 109.47601 * 89.99603 * 12 11 10 38 38 H 1.08994 * 109.47327 * 209.99846 * 12 11 10 39 39 H 1.09006 * 109.46955 * 330.00182 * 12 11 10 40 40 H 1.09000 * 109.46896 * 218.01891 * 13 11 10 41 41 H 1.08994 * 109.47238 * 338.01755 * 13 11 10 42 42 H 1.00898 * 111.00099 * 56.04375 * 14 13 11 43 43 H 1.08998 * 109.46889 * 299.99623 * 15 14 13 44 44 H 1.08992 * 109.47462 * 59.99693 * 15 14 13 45 45 H 1.09001 * 109.47024 * 60.00054 * 17 16 15 46 46 H 1.09000 * 109.46981 * 180.02562 * 17 16 15 47 47 H 1.08999 * 109.47083 * 300.00419 * 17 16 15 48 48 H 1.09002 * 109.46687 * 60.00351 * 18 16 15 49 49 H 1.09000 * 109.47077 * 179.97438 * 18 16 15 50 50 H 1.09001 * 109.47271 * 300.00186 * 18 16 15 51 51 H 0.97000 * 119.99912 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1075 -0.0585 -0.0016 6 6 5.4864 -0.1694 -0.0017 7 6 6.2777 0.9655 -0.0013 8 6 5.6952 2.2162 -0.0061 9 6 4.3047 2.3348 -0.0002 10 6 3.6740 3.6717 0.0003 11 6 4.1661 4.6365 0.7648 12 6 3.6125 6.0344 0.6635 13 6 5.2791 4.3353 1.7351 14 7 6.5658 4.7180 1.1385 15 6 7.6766 4.4375 2.0580 16 6 8.9968 4.8491 1.4034 17 6 9.1933 4.0566 0.1095 18 6 8.9636 6.3453 1.0850 19 6 10.1362 4.5619 2.3469 20 1 9.9385 4.1295 3.3166 21 6 11.4312 4.8512 1.9721 22 7 11.6720 5.3772 0.7911 23 14 12.8436 4.4959 3.1419 24 1 12.3106 3.9094 4.3978 25 1 13.7830 3.5370 2.5069 26 1 13.5599 5.7593 3.4513 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.6886 1.8464 0.8899 31 1 1.6885 1.8463 -0.8900 32 1 3.4954 -0.9484 -0.0016 33 1 5.9471 -1.1462 -0.0021 34 1 7.3536 0.8723 -0.0009 35 1 6.3139 3.1013 -0.0103 36 1 2.8151 3.8637 -0.6255 37 1 2.7861 6.1497 1.3649 38 1 4.3956 6.7536 0.9034 39 1 3.2551 6.2111 -0.3510 40 1 5.1225 4.8998 2.6542 41 1 5.2860 3.2689 1.9604 42 1 6.5615 5.6882 0.8614 43 1 7.5368 5.0025 2.9796 44 1 7.6999 3.3718 2.2852 45 1 8.3691 4.2647 -0.5728 46 1 10.1341 4.3494 -0.3566 47 1 9.2169 2.9907 0.3363 48 1 8.8237 6.9098 2.0069 49 1 9.9044 6.6385 0.6191 50 1 8.1394 6.5534 0.4027 51 1 12.5831 5.5804 0.5273 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459731951.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:44 Heat of formation + Delta-G solvation = -11.574502 kcal Electronic energy + Delta-G solvation = -27229.334113 eV Core-core repulsion = 23707.745580 eV Total energy + Delta-G solvation = -3521.588534 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.63979 -37.91003 -37.11787 -35.69189 -33.14024 -31.87667 -30.83724 -30.50312 -27.53132 -26.57998 -25.75432 -25.57520 -25.34715 -25.16954 -22.98133 -21.80949 -20.89079 -18.64498 -18.02068 -16.67104 -16.47764 -16.08054 -15.95009 -15.61641 -15.16303 -14.68729 -14.40651 -14.28221 -14.05229 -13.74764 -13.48316 -13.11818 -13.06321 -12.85732 -12.53589 -12.42372 -12.13673 -12.05128 -11.90896 -11.80351 -11.57345 -11.19052 -11.09542 -10.98586 -10.71649 -10.62833 -10.55699 -10.39562 -10.18369 -10.06405 -10.03167 -9.39868 -9.38535 -9.07004 -8.62902 -8.41071 -8.29497 -7.96951 -7.69793 -5.91647 -4.01781 1.24334 1.73736 2.46507 3.30195 3.38880 3.42374 3.54152 4.08143 4.44107 4.76466 4.84940 4.89361 5.04689 5.07661 5.13157 5.16603 5.27314 5.34077 5.34190 5.36622 5.37600 5.50698 5.60304 5.61490 5.74931 5.82266 5.91838 5.99222 6.07698 6.20485 6.33055 6.37351 6.48334 6.58204 6.67281 6.70816 6.80892 6.88392 6.97979 7.03578 7.05815 7.07813 7.15800 7.33858 7.40785 7.44835 7.68975 7.75357 7.82174 7.93678 8.20605 8.34328 8.55509 8.99834 9.63448 11.08809 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018591 B = 0.003113 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.748207 B = 8991.041455 C = 9973.360576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.388 6.388 3 C 0.109 3.891 4 C -0.092 4.092 5 C -0.111 4.111 6 C -0.125 4.125 7 C -0.122 4.122 8 C -0.103 4.103 9 C -0.055 4.055 10 C -0.124 4.124 11 C -0.102 4.102 12 C -0.117 4.117 13 C 0.082 3.918 14 N -0.677 5.677 15 C 0.072 3.928 16 C 0.070 3.930 17 C -0.120 4.120 18 C -0.133 4.133 19 C -0.505 4.505 20 H 0.052 0.948 21 C 0.065 3.935 22 N -0.884 5.884 23 Si 0.887 3.113 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.286 1.286 27 H 0.040 0.960 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.124 0.876 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.177 0.823 36 H 0.113 0.887 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.029 0.971 41 H 0.080 0.920 42 H 0.339 0.661 43 H 0.014 0.986 44 H 0.058 0.942 45 H 0.020 0.980 46 H 0.074 0.926 47 H 0.019 0.981 48 H 0.018 0.982 49 H 0.083 0.917 50 H 0.011 0.989 51 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.177 -5.024 -2.584 20.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C 0.033 3.967 4 C -0.092 4.092 5 C -0.129 4.129 6 C -0.143 4.143 7 C -0.140 4.140 8 C -0.120 4.120 9 C -0.055 4.055 10 C -0.143 4.143 11 C -0.102 4.102 12 C -0.173 4.173 13 C -0.047 4.047 14 N -0.309 5.309 15 C -0.056 4.056 16 C 0.070 3.930 17 C -0.177 4.177 18 C -0.191 4.191 19 C -0.544 4.544 20 H 0.070 0.930 21 C -0.135 4.135 22 N -0.523 5.523 23 Si 0.715 3.285 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.212 1.212 27 H 0.059 0.941 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.142 0.858 33 H 0.133 0.867 34 H 0.141 0.859 35 H 0.194 0.806 36 H 0.131 0.869 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.047 0.953 41 H 0.099 0.901 42 H 0.158 0.842 43 H 0.033 0.967 44 H 0.076 0.924 45 H 0.039 0.961 46 H 0.093 0.907 47 H 0.038 0.962 48 H 0.037 0.963 49 H 0.102 0.898 50 H 0.030 0.970 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -19.826 -5.707 -3.010 20.850 hybrid contribution 0.446 0.647 1.351 1.562 sum -19.380 -5.060 -1.660 20.099 Atomic orbital electron populations 1.22727 0.81085 1.02716 0.99956 1.87858 1.19497 1.27893 1.95453 1.21192 0.90780 0.84404 1.00358 1.19669 0.93116 0.93525 1.02853 1.20767 0.94414 0.97045 1.00681 1.21230 0.93746 0.98570 1.00748 1.21281 1.00208 0.92594 0.99915 1.22624 0.94048 1.00293 0.95063 1.18730 0.93302 0.91618 1.01889 1.21340 1.00071 0.92173 1.00676 1.22036 0.96433 0.94720 0.97034 1.20812 1.00840 0.93724 1.01949 1.21109 0.88412 1.01504 0.93648 1.60642 1.01288 1.26754 1.42204 1.22207 0.91272 0.99589 0.92498 1.18082 0.89324 0.92074 0.93539 1.21660 1.00858 0.97427 0.97801 1.21847 1.01039 0.98391 0.97824 1.21139 0.91055 1.40992 1.01210 0.92990 1.24875 0.98518 0.95103 0.95054 1.69840 1.19728 1.43587 1.19156 0.86623 0.82690 0.77857 0.81299 1.19968 1.21113 1.21217 0.94104 0.89638 0.94078 0.92189 0.92291 0.85766 0.86653 0.85925 0.80632 0.86936 0.91721 0.91520 0.91735 0.95303 0.90146 0.84152 0.96741 0.92368 0.96141 0.90705 0.96228 0.96255 0.89819 0.97031 0.93263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.38 9.19 -35.23 -0.32 -4.71 16 3 C 0.11 1.21 5.30 36.01 0.19 1.40 16 4 C -0.09 -1.25 5.91 -104.24 -0.62 -1.86 16 5 C -0.11 -1.53 9.37 -39.64 -0.37 -1.90 16 6 C -0.12 -1.74 10.04 -39.50 -0.40 -2.14 16 7 C -0.12 -1.88 10.03 -39.64 -0.40 -2.28 16 8 C -0.10 -1.63 7.61 -39.19 -0.30 -1.93 16 9 C -0.06 -0.79 4.97 -105.01 -0.52 -1.31 16 10 C -0.12 -1.55 8.51 -37.57 -0.32 -1.87 16 11 C -0.10 -1.28 5.50 -101.26 -0.56 -1.84 16 12 C -0.12 -1.19 10.04 36.00 0.36 -0.83 16 13 C 0.08 1.20 4.78 -4.97 -0.02 1.18 16 14 N -0.68 -11.35 3.33 -115.06 -0.38 -11.73 16 15 C 0.07 1.45 4.59 -3.82 -0.02 1.43 16 16 C 0.07 1.64 0.57 -155.66 -0.09 1.55 16 17 C -0.12 -2.81 8.09 37.16 0.30 -2.51 16 18 C -0.13 -3.06 7.92 37.16 0.29 -2.76 16 19 C -0.51 -13.35 8.01 -34.44 -0.28 -13.63 16 20 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 21 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 22 N -0.88 -24.17 9.35 55.43 0.52 -23.66 16 23 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 24 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.58 7.94 -51.93 -0.41 0.17 16 32 H 0.12 1.60 7.00 -52.48 -0.37 1.23 16 33 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 35 H 0.18 3.05 4.85 -52.49 -0.25 2.79 16 36 H 0.11 1.19 7.74 -52.49 -0.41 0.79 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 39 H 0.06 0.60 8.07 -51.93 -0.42 0.18 16 40 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 1.28 5.86 -51.93 -0.30 0.97 16 42 H 0.34 5.64 6.76 -39.29 -0.27 5.37 16 43 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.02 0.43 7.60 -51.93 -0.39 0.04 16 46 H 0.07 1.95 6.07 -51.93 -0.32 1.64 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 50 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 51 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 396.37 15.07 5.97 5.97 Total: -1.00 -27.63 396.37 -9.78 -37.42 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -8.83 Total: 7.02 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: -1.72 Total: -26.30 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.14 Total: -35.39 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -0.32 Total: -4.71 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -27.63 -9.78 -37.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459731951.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.844 kcal (2) G-P(sol) polarization free energy of solvation -27.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds