Wall clock time and date at job start Tue Mar 31 2020 12:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42893 * 114.00472 * 2 1 4 4 C 1.50700 * 109.47512 * 180.02562 * 3 2 1 5 5 C 1.37999 * 120.07101 * 359.97438 * 4 3 2 6 6 C 1.38314 * 120.14300 * 180.02562 * 5 4 3 7 7 C 1.38374 * 120.28681 * 359.95440 * 6 5 4 8 8 C 1.37944 * 120.14063 * 0.02562 * 7 6 5 9 9 C 1.39517 * 120.07499 * 180.20782 * 4 3 2 10 10 C 1.47812 * 120.14081 * 0.04893 * 9 4 3 11 11 C 1.32561 * 120.00310 * 140.48722 * 10 9 4 12 12 C 1.50701 * 120.00074 * 353.31299 * 11 10 9 13 13 C 1.50700 * 119.99896 * 173.31866 * 11 10 9 14 14 N 1.46905 * 109.47093 * 94.99822 * 13 11 10 15 15 C 1.46900 * 111.00154 * 179.97438 * 14 13 11 16 16 C 1.52992 * 109.47276 * 180.02562 * 15 14 13 17 17 C 1.53011 * 109.47223 * 299.99936 * 16 15 14 18 18 C 1.53000 * 109.47550 * 59.99852 * 16 15 14 19 19 C 1.50699 * 109.47187 * 180.02562 * 16 15 14 20 20 H 1.07993 * 120.00188 * 357.55846 * 19 16 15 21 21 C 1.37879 * 120.00112 * 177.55497 * 19 16 15 22 22 N 1.31513 * 119.99937 * 6.64171 * 21 19 16 23 23 Si 1.86802 * 120.00195 * 186.64504 * 21 19 16 24 24 H 1.48501 * 109.47121 * 94.99254 * 23 21 19 25 25 H 1.48500 * 109.47060 * 214.99195 * 23 21 19 26 26 H 1.48498 * 109.47018 * 334.99472 * 23 21 19 27 27 H 1.09009 * 109.46815 * 299.99965 * 1 2 3 28 28 H 1.08997 * 109.47439 * 59.99668 * 1 2 3 29 29 H 1.08995 * 109.47376 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47225 * 59.99952 * 3 2 1 31 31 H 1.09006 * 109.47349 * 300.00216 * 3 2 1 32 32 H 1.08005 * 119.92538 * 359.97438 * 5 4 3 33 33 H 1.08004 * 119.85885 * 179.97438 * 6 5 4 34 34 H 1.07999 * 119.92657 * 180.02562 * 7 6 5 35 35 H 1.08001 * 120.07621 * 179.97438 * 8 7 6 36 36 H 1.08001 * 119.99796 * 320.48044 * 10 9 4 37 37 H 1.08998 * 109.46844 * 88.65795 * 12 11 10 38 38 H 1.09000 * 109.47214 * 208.66107 * 12 11 10 39 39 H 1.09005 * 109.46997 * 328.66640 * 12 11 10 40 40 H 1.08998 * 109.46934 * 214.99377 * 13 11 10 41 41 H 1.08996 * 109.47432 * 334.99981 * 13 11 10 42 42 H 1.00899 * 110.99859 * 303.95099 * 14 13 11 43 43 H 1.08994 * 109.47179 * 300.00068 * 15 14 13 44 44 H 1.09006 * 109.46747 * 59.99851 * 15 14 13 45 45 H 1.08996 * 109.46461 * 64.80737 * 17 16 15 46 46 H 1.08999 * 109.46899 * 184.80809 * 17 16 15 47 47 H 1.08995 * 109.47054 * 304.81508 * 17 16 15 48 48 H 1.09007 * 109.46484 * 59.99907 * 18 16 15 49 49 H 1.08997 * 109.47379 * 180.02562 * 18 16 15 50 50 H 1.08998 * 109.46879 * 300.00440 * 18 16 15 51 51 H 0.96998 * 120.00489 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5126 1.1863 -0.0006 5 6 4.1076 -0.0588 -0.0006 6 6 5.4863 -0.1698 -0.0006 7 6 6.2777 0.9653 -0.0017 8 6 5.6954 2.2158 -0.0022 9 6 4.3049 2.3347 0.0036 10 6 3.6743 3.6715 0.0099 11 6 4.1931 4.6457 0.7440 12 6 5.3321 4.3541 1.6867 13 6 3.6437 6.0449 0.6361 14 7 2.6420 6.2602 1.6889 15 6 2.0838 7.6170 1.6149 16 6 1.0474 7.8033 2.7248 17 6 -0.0761 6.7794 2.5506 18 6 1.7157 7.6004 4.0861 19 6 0.4744 9.1950 2.6485 20 1 0.8433 9.8912 1.9099 21 6 -0.5211 9.5795 3.5215 22 7 -0.8796 8.7809 4.5030 23 14 -1.3607 11.2348 3.3104 24 1 -2.6076 11.0605 2.5229 25 1 -1.6923 11.7954 4.6449 26 1 -0.4497 12.1643 2.5954 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.6887 1.8463 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 3.4953 -0.9485 0.0004 33 1 5.9471 -1.1466 -0.0001 34 1 7.3537 0.8719 -0.0021 35 1 6.3141 3.1010 -0.0026 36 1 2.7909 3.8546 -0.5838 37 1 6.2788 4.4669 1.1584 38 1 5.2981 5.0509 2.5242 39 1 5.2433 3.3335 2.0591 40 1 4.4546 6.7636 0.7537 41 1 3.1786 6.1783 -0.3406 42 1 1.9120 5.5654 1.6409 43 1 2.8841 8.3464 1.7394 44 1 1.6081 7.7617 0.6449 45 1 0.3230 5.7749 2.6904 46 1 -0.8559 6.9666 3.2888 47 1 -0.4957 6.8674 1.5485 48 1 2.5162 8.3299 4.2101 49 1 0.9772 7.7327 4.8767 50 1 2.1299 6.5937 4.1409 51 1 -1.5796 9.0514 5.1175 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459731957.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:46 Heat of formation + Delta-G solvation = -15.517395 kcal Electronic energy + Delta-G solvation = -26495.740430 eV Core-core repulsion = 22973.980919 eV Total energy + Delta-G solvation = -3521.759510 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.86014 -37.84549 -37.29544 -35.77408 -33.34435 -32.25807 -31.11775 -29.90293 -27.73693 -27.07105 -25.79170 -25.57322 -25.35893 -25.15619 -23.04632 -22.04326 -21.14151 -18.64163 -18.19590 -16.79663 -16.57298 -16.09388 -15.94022 -15.64234 -15.17210 -14.98682 -14.58218 -14.48775 -14.27276 -14.05995 -13.54387 -13.32857 -12.99223 -12.90923 -12.62285 -12.35958 -12.24629 -12.13789 -11.84355 -11.79245 -11.54003 -11.43126 -11.14212 -11.08495 -10.98744 -10.73140 -10.64059 -10.50486 -10.21304 -10.06428 -10.04352 -9.60134 -9.40364 -9.08186 -8.80399 -8.65607 -8.29308 -8.15441 -7.70827 -5.92700 -4.02637 0.95876 1.31522 2.31712 3.29881 3.37591 3.40361 3.50176 3.71863 4.42873 4.61488 4.69157 4.89677 4.91715 4.99551 5.02644 5.08067 5.13006 5.17680 5.25486 5.32277 5.35233 5.39340 5.45729 5.53793 5.67396 5.73903 5.80936 5.85490 5.90126 6.03254 6.10396 6.28111 6.30763 6.36613 6.41741 6.44717 6.62372 6.70525 6.83913 6.85000 6.91713 6.98616 7.06665 7.14362 7.38546 7.46625 7.69882 7.75012 7.81451 7.94346 8.18791 8.35145 8.55295 8.98742 9.62103 11.07582 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016616 B = 0.002687 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.680842 B =10418.522721 C =11592.209934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.103 3.897 4 C -0.083 4.083 5 C -0.098 4.098 6 C -0.128 4.128 7 C -0.123 4.123 8 C -0.113 4.113 9 C -0.034 4.034 10 C -0.152 4.152 11 C -0.075 4.075 12 C -0.120 4.120 13 C 0.088 3.912 14 N -0.680 5.680 15 C 0.075 3.925 16 C 0.069 3.931 17 C -0.133 4.133 18 C -0.119 4.119 19 C -0.507 4.507 20 H 0.052 0.948 21 C 0.065 3.935 22 N -0.883 5.883 23 Si 0.887 3.113 24 H -0.283 1.283 25 H -0.287 1.287 26 H -0.275 1.275 27 H 0.045 0.955 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.130 0.870 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.129 0.871 36 H 0.116 0.884 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.029 0.971 42 H 0.337 0.663 43 H 0.056 0.944 44 H 0.013 0.987 45 H 0.012 0.988 46 H 0.081 0.919 47 H 0.017 0.983 48 H 0.017 0.983 49 H 0.076 0.924 50 H 0.019 0.981 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.869 -17.168 -9.571 21.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.309 6.309 3 C 0.027 3.973 4 C -0.083 4.083 5 C -0.116 4.116 6 C -0.146 4.146 7 C -0.141 4.141 8 C -0.131 4.131 9 C -0.034 4.034 10 C -0.171 4.171 11 C -0.076 4.076 12 C -0.176 4.176 13 C -0.041 4.041 14 N -0.311 5.311 15 C -0.054 4.054 16 C 0.069 3.931 17 C -0.190 4.190 18 C -0.177 4.177 19 C -0.546 4.546 20 H 0.070 0.930 21 C -0.136 4.136 22 N -0.522 5.522 23 Si 0.715 3.285 24 H -0.209 1.209 25 H -0.213 1.213 26 H -0.200 1.200 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.148 0.852 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.146 0.854 36 H 0.134 0.866 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.047 0.953 42 H 0.156 0.844 43 H 0.075 0.925 44 H 0.031 0.969 45 H 0.031 0.969 46 H 0.100 0.900 47 H 0.036 0.964 48 H 0.037 0.963 49 H 0.095 0.905 50 H 0.038 0.962 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.314 -17.144 -8.928 21.909 hybrid contribution -1.357 1.124 -0.975 2.014 sum 8.956 -16.020 -9.903 20.855 Atomic orbital electron populations 1.22759 0.80566 1.02794 1.00434 1.87799 1.19954 1.27636 1.95558 1.21236 0.90157 0.84765 1.01138 1.19757 0.93789 0.93213 1.01539 1.20904 0.94450 0.97395 0.98875 1.21175 0.93785 0.98455 1.01164 1.21079 0.99699 0.92546 1.00750 1.21386 0.93755 0.97776 1.00168 1.18714 0.92832 0.92224 0.99665 1.21404 1.00715 0.91540 1.03437 1.22144 0.96230 0.94493 0.94702 1.21034 0.95663 1.02472 0.98429 1.21008 0.96502 0.92961 0.93607 1.60633 1.18001 1.05967 1.46537 1.22193 0.97475 0.87316 0.98380 1.18085 0.89930 0.94313 0.90791 1.21813 1.01623 0.95634 0.99966 1.21670 0.98990 0.96499 1.00554 1.21121 1.19434 0.97436 1.16622 0.92973 1.24883 0.96953 0.96817 0.94897 1.69852 1.30295 1.36460 1.15568 0.86663 0.79913 0.84492 0.77384 1.20898 1.21317 1.20039 0.93624 0.93943 0.89561 0.91385 0.91963 0.85220 0.86302 0.86203 0.85361 0.86634 0.91658 0.90871 0.91501 0.90534 0.95290 0.84390 0.92501 0.96890 0.96865 0.89983 0.96415 0.96340 0.90532 0.96219 0.93194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.39 9.18 -35.23 -0.32 -4.71 16 3 C 0.10 1.16 5.28 36.01 0.19 1.35 16 4 C -0.08 -0.99 5.91 -104.23 -0.62 -1.61 16 5 C -0.10 -1.10 9.37 -39.64 -0.37 -1.47 16 6 C -0.13 -1.26 10.04 -39.50 -0.40 -1.66 16 7 C -0.12 -1.19 10.03 -39.64 -0.40 -1.58 16 8 C -0.11 -1.20 7.78 -39.20 -0.31 -1.51 16 9 C -0.03 -0.41 5.03 -105.01 -0.53 -0.93 16 10 C -0.15 -1.84 8.53 -37.58 -0.32 -2.16 16 11 C -0.08 -0.95 5.50 -101.26 -0.56 -1.51 16 12 C -0.12 -1.39 8.28 36.01 0.30 -1.09 16 13 C 0.09 1.27 5.84 -4.97 -0.03 1.24 16 14 N -0.68 -11.88 5.70 -115.06 -0.66 -12.54 16 15 C 0.07 1.53 4.59 -3.83 -0.02 1.52 16 16 C 0.07 1.66 0.57 -155.66 -0.09 1.57 16 17 C -0.13 -3.10 7.82 37.16 0.29 -2.81 16 18 C -0.12 -2.91 8.12 37.16 0.30 -2.61 16 19 C -0.51 -13.59 8.01 -34.44 -0.28 -13.87 16 20 H 0.05 1.40 7.75 -52.49 -0.41 0.99 16 21 C 0.07 1.77 5.10 -17.82 -0.09 1.68 16 22 N -0.88 -24.38 9.38 55.43 0.52 -23.86 16 23 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 27 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.64 7.91 -51.93 -0.41 0.23 16 32 H 0.13 1.39 7.00 -52.48 -0.37 1.02 16 33 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 34 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.13 1.22 5.79 -52.49 -0.30 0.91 16 36 H 0.12 1.35 7.66 -52.49 -0.40 0.95 16 37 H 0.06 0.63 6.72 -51.93 -0.35 0.28 16 38 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 39 H 0.07 0.79 6.51 -51.93 -0.34 0.45 16 40 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.03 0.41 8.03 -51.93 -0.42 -0.01 16 42 H 0.34 5.91 6.88 -39.29 -0.27 5.64 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 44 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.01 0.27 6.82 -51.93 -0.35 -0.09 16 46 H 0.08 2.14 6.02 -51.93 -0.31 1.82 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 49 H 0.08 2.05 6.02 -51.93 -0.31 1.74 16 50 H 0.02 0.44 7.60 -51.93 -0.39 0.04 16 51 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 398.48 15.07 6.01 6.01 Total: -1.00 -28.21 398.48 -10.12 -38.34 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -8.85 Total: 4.85 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: -1.80 Total: -24.07 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: -0.14 Total: -36.40 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -0.32 Total: -4.71 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -28.21 -10.12 -38.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459731957.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.819 kcal (2) G-P(sol) polarization free energy of solvation -28.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds