Wall clock time and date at job start Tue Mar 31 2020 12:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42893 * 114.00472 * 2 1 4 4 C 1.50700 * 109.47512 * 180.02562 * 3 2 1 5 5 C 1.37999 * 120.07101 * 359.97438 * 4 3 2 6 6 C 1.38314 * 120.14300 * 180.02562 * 5 4 3 7 7 C 1.38374 * 120.28681 * 359.95440 * 6 5 4 8 8 C 1.37944 * 120.14063 * 0.02562 * 7 6 5 9 9 C 1.39517 * 120.07499 * 180.20782 * 4 3 2 10 10 C 1.47812 * 120.14081 * 0.04893 * 9 4 3 11 11 C 1.32561 * 120.00310 * 140.48722 * 10 9 4 12 12 C 1.50701 * 120.00074 * 353.31299 * 11 10 9 13 13 C 1.50700 * 119.99896 * 173.31866 * 11 10 9 14 14 N 1.46905 * 109.47093 * 94.99822 * 13 11 10 15 15 C 1.46900 * 111.00154 * 179.97438 * 14 13 11 16 16 C 1.52992 * 109.47276 * 180.02562 * 15 14 13 17 17 C 1.53011 * 109.47223 * 299.99936 * 16 15 14 18 18 C 1.53000 * 109.47550 * 59.99852 * 16 15 14 19 19 C 1.50699 * 109.47187 * 180.02562 * 16 15 14 20 20 H 1.07993 * 120.00188 * 357.55846 * 19 16 15 21 21 C 1.37879 * 120.00112 * 177.55497 * 19 16 15 22 22 N 1.31513 * 119.99937 * 6.64171 * 21 19 16 23 23 Si 1.86802 * 120.00195 * 186.64504 * 21 19 16 24 24 H 1.48501 * 109.47121 * 94.99254 * 23 21 19 25 25 H 1.48500 * 109.47060 * 214.99195 * 23 21 19 26 26 H 1.48498 * 109.47018 * 334.99472 * 23 21 19 27 27 H 1.09009 * 109.46815 * 299.99965 * 1 2 3 28 28 H 1.08997 * 109.47439 * 59.99668 * 1 2 3 29 29 H 1.08995 * 109.47376 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47225 * 59.99952 * 3 2 1 31 31 H 1.09006 * 109.47349 * 300.00216 * 3 2 1 32 32 H 1.08005 * 119.92538 * 359.97438 * 5 4 3 33 33 H 1.08004 * 119.85885 * 179.97438 * 6 5 4 34 34 H 1.07999 * 119.92657 * 180.02562 * 7 6 5 35 35 H 1.08001 * 120.07621 * 179.97438 * 8 7 6 36 36 H 1.08001 * 119.99796 * 320.48044 * 10 9 4 37 37 H 1.08998 * 109.46844 * 88.65795 * 12 11 10 38 38 H 1.09000 * 109.47214 * 208.66107 * 12 11 10 39 39 H 1.09005 * 109.46997 * 328.66640 * 12 11 10 40 40 H 1.08998 * 109.46934 * 214.99377 * 13 11 10 41 41 H 1.08996 * 109.47432 * 334.99981 * 13 11 10 42 42 H 1.00899 * 110.99859 * 303.95099 * 14 13 11 43 43 H 1.08994 * 109.47179 * 300.00068 * 15 14 13 44 44 H 1.09006 * 109.46747 * 59.99851 * 15 14 13 45 45 H 1.08996 * 109.46461 * 64.80737 * 17 16 15 46 46 H 1.08999 * 109.46899 * 184.80809 * 17 16 15 47 47 H 1.08995 * 109.47054 * 304.81508 * 17 16 15 48 48 H 1.09007 * 109.46484 * 59.99907 * 18 16 15 49 49 H 1.08997 * 109.47379 * 180.02562 * 18 16 15 50 50 H 1.08998 * 109.46879 * 300.00440 * 18 16 15 51 51 H 0.96998 * 120.00489 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5126 1.1863 -0.0006 5 6 4.1076 -0.0588 -0.0006 6 6 5.4863 -0.1698 -0.0006 7 6 6.2777 0.9653 -0.0017 8 6 5.6954 2.2158 -0.0022 9 6 4.3049 2.3347 0.0036 10 6 3.6743 3.6715 0.0099 11 6 4.1931 4.6457 0.7440 12 6 5.3321 4.3541 1.6867 13 6 3.6437 6.0449 0.6361 14 7 2.6420 6.2602 1.6889 15 6 2.0838 7.6170 1.6149 16 6 1.0474 7.8033 2.7248 17 6 -0.0761 6.7794 2.5506 18 6 1.7157 7.6004 4.0861 19 6 0.4744 9.1950 2.6485 20 1 0.8433 9.8912 1.9099 21 6 -0.5211 9.5795 3.5215 22 7 -0.8796 8.7809 4.5030 23 14 -1.3607 11.2348 3.3104 24 1 -2.6076 11.0605 2.5229 25 1 -1.6923 11.7954 4.6449 26 1 -0.4497 12.1643 2.5954 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.6887 1.8463 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 3.4953 -0.9485 0.0004 33 1 5.9471 -1.1466 -0.0001 34 1 7.3537 0.8719 -0.0021 35 1 6.3141 3.1010 -0.0026 36 1 2.7909 3.8546 -0.5838 37 1 6.2788 4.4669 1.1584 38 1 5.2981 5.0509 2.5242 39 1 5.2433 3.3335 2.0591 40 1 4.4546 6.7636 0.7537 41 1 3.1786 6.1783 -0.3406 42 1 1.9120 5.5654 1.6409 43 1 2.8841 8.3464 1.7394 44 1 1.6081 7.7617 0.6449 45 1 0.3230 5.7749 2.6904 46 1 -0.8559 6.9666 3.2888 47 1 -0.4957 6.8674 1.5485 48 1 2.5162 8.3299 4.2101 49 1 0.9772 7.7327 4.8767 50 1 2.1299 6.5937 4.1409 51 1 -1.5796 9.0514 5.1175 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459731957.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:46 Heat of formation + Delta-G solvation = -28.726597 kcal Electronic energy + Delta-G solvation = -26496.313223 eV Core-core repulsion = 22973.980919 eV Total energy + Delta-G solvation = -3522.332304 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.68597 -38.93268 -38.51471 -37.09633 -34.83919 -33.12880 -32.72241 -31.01403 -28.55581 -27.98605 -27.50655 -27.25992 -26.88923 -26.25166 -24.52238 -22.92865 -21.97602 -20.37621 -19.29698 -17.89700 -17.61747 -17.36918 -16.97694 -16.85233 -16.53281 -15.99162 -15.90667 -15.64962 -15.35471 -15.11474 -14.77720 -14.54176 -14.30363 -13.99248 -13.89686 -13.69600 -13.43593 -13.17960 -13.08006 -12.98925 -12.80253 -12.68549 -12.60233 -12.52328 -12.40413 -12.22759 -12.10523 -12.04081 -11.87502 -11.54927 -11.31403 -10.96279 -10.84166 -10.62450 -10.44380 -10.32712 -9.61238 -9.22263 -8.97196 -7.97338 -6.13697 0.10786 0.51209 1.39269 1.41440 1.44281 1.52537 2.46323 2.73838 2.90646 3.24306 3.52923 3.81026 3.89479 4.00115 4.11924 4.20105 4.22110 4.31946 4.40144 4.51469 4.54040 4.54782 4.57152 4.63258 4.68924 4.75940 4.77387 4.84539 4.85652 4.87719 4.92282 5.02297 5.07201 5.17091 5.17260 5.24363 5.28368 5.43786 5.45233 5.54101 5.58972 5.63545 5.70289 5.72636 5.75971 5.91418 6.12304 6.16860 6.18981 6.24405 6.34040 6.49648 6.62600 6.95946 7.53682 9.00715 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016616 B = 0.002687 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.680842 B =10418.522721 C =11592.209934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.105 3.895 4 C -0.099 4.099 5 C -0.112 4.112 6 C -0.127 4.127 7 C -0.124 4.124 8 C -0.116 4.116 9 C -0.052 4.052 10 C -0.141 4.141 11 C -0.086 4.086 12 C -0.113 4.113 13 C 0.092 3.908 14 N -0.682 5.682 15 C 0.089 3.911 16 C 0.061 3.939 17 C -0.121 4.121 18 C -0.106 4.106 19 C -0.527 4.527 20 H 0.045 0.955 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.943 3.057 24 H -0.279 1.279 25 H -0.286 1.286 26 H -0.273 1.273 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.129 0.871 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.140 0.860 36 H 0.116 0.884 37 H 0.085 0.915 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.034 0.966 42 H 0.337 0.663 43 H 0.050 0.950 44 H 0.010 0.990 45 H 0.032 0.968 46 H 0.053 0.947 47 H 0.019 0.981 48 H 0.009 0.991 49 H 0.050 0.950 50 H 0.032 0.968 51 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.041 -18.063 -10.561 23.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C 0.029 3.971 4 C -0.099 4.099 5 C -0.130 4.130 6 C -0.145 4.145 7 C -0.141 4.141 8 C -0.134 4.134 9 C -0.052 4.052 10 C -0.160 4.160 11 C -0.087 4.087 12 C -0.169 4.169 13 C -0.037 4.037 14 N -0.313 5.313 15 C -0.040 4.040 16 C 0.060 3.940 17 C -0.179 4.179 18 C -0.164 4.164 19 C -0.566 4.566 20 H 0.063 0.937 21 C -0.176 4.176 22 N -0.541 5.541 23 Si 0.770 3.230 24 H -0.205 1.205 25 H -0.212 1.212 26 H -0.197 1.197 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.121 0.879 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.147 0.853 33 H 0.160 0.840 34 H 0.164 0.836 35 H 0.158 0.842 36 H 0.134 0.866 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.052 0.948 42 H 0.156 0.844 43 H 0.068 0.932 44 H 0.028 0.972 45 H 0.051 0.949 46 H 0.072 0.928 47 H 0.038 0.962 48 H 0.029 0.971 49 H 0.068 0.932 50 H 0.050 0.950 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 11.490 -18.046 -9.927 23.584 hybrid contribution -1.698 1.308 -0.690 2.252 sum 9.791 -16.738 -10.617 22.108 Atomic orbital electron populations 1.22935 0.79338 1.04062 1.00766 1.87777 1.21362 1.27655 1.95621 1.21201 0.90173 0.84849 1.00926 1.19927 0.94146 0.93696 1.02110 1.21035 0.95320 0.97132 0.99485 1.21498 0.93295 0.99816 0.99854 1.21414 1.01121 0.91963 0.99652 1.21598 0.93346 0.98811 0.99651 1.18785 0.93560 0.91850 1.00985 1.21464 1.00239 0.91659 1.02601 1.22017 0.97206 0.93614 0.95822 1.20982 0.96294 1.01778 0.97863 1.21008 0.95608 0.94283 0.92754 1.60550 1.18153 1.04279 1.48328 1.21849 0.96309 0.89010 0.96795 1.18131 0.90935 0.93271 0.91664 1.21642 1.00625 0.96569 0.99048 1.21500 0.97882 0.96900 1.00078 1.21447 1.19872 0.98782 1.16460 0.93660 1.25529 0.97578 0.99765 0.94752 1.69981 1.30484 1.37724 1.15956 0.85781 0.78943 0.81063 0.77220 1.20520 1.21193 1.19741 0.93708 0.93179 0.87900 0.92219 0.91497 0.85288 0.83981 0.83570 0.84233 0.86627 0.89615 0.92212 0.91782 0.90291 0.94811 0.84391 0.93160 0.97169 0.94915 0.92802 0.96213 0.97131 0.93155 0.94951 0.93324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 11.01 113.37 1.25 1.65 16 2 O -0.40 -8.90 9.18 -148.98 -1.37 -10.27 16 3 C 0.10 2.31 5.28 71.24 0.38 2.69 16 4 C -0.10 -2.28 5.91 -19.61 -0.12 -2.39 16 5 C -0.11 -2.37 9.37 22.23 0.21 -2.16 16 6 C -0.13 -2.21 10.04 22.32 0.22 -1.99 16 7 C -0.12 -2.05 10.03 22.23 0.22 -1.83 16 8 C -0.12 -2.22 7.78 22.52 0.18 -2.05 16 9 C -0.05 -1.16 5.03 -20.12 -0.10 -1.26 16 10 C -0.14 -3.24 8.53 23.65 0.20 -3.04 16 11 C -0.09 -2.06 5.50 -17.60 -0.10 -2.16 16 12 C -0.11 -2.43 8.28 71.24 0.59 -1.84 16 13 C 0.09 2.52 5.84 85.56 0.50 3.02 16 14 N -0.68 -23.17 5.70 -517.94 -2.95 -26.13 16 15 C 0.09 3.62 4.59 86.30 0.40 4.02 16 16 C 0.06 2.90 0.57 -52.93 -0.03 2.87 16 17 C -0.12 -5.63 7.82 71.99 0.56 -5.07 16 18 C -0.11 -5.18 8.12 71.98 0.58 -4.59 16 19 C -0.53 -28.35 8.01 25.60 0.20 -28.14 16 20 H 0.05 2.44 7.75 -2.91 -0.02 2.41 16 21 C 0.02 1.24 5.10 84.66 0.43 1.67 16 22 N -0.90 -50.37 9.38 21.45 0.20 -50.16 16 23 Si 0.94 43.19 29.54 68.60 2.03 45.22 16 24 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 26 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 27 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 1.36 7.91 -2.38 -0.02 1.35 16 32 H 0.13 2.68 7.00 -2.91 -0.02 2.66 16 33 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 34 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 35 H 0.14 2.28 5.79 -2.91 -0.02 2.26 16 36 H 0.12 2.61 7.66 -2.91 -0.02 2.58 16 37 H 0.09 1.45 6.72 -2.39 -0.02 1.44 16 38 H 0.06 1.44 8.12 -2.39 -0.02 1.42 16 39 H 0.06 1.42 6.51 -2.38 -0.02 1.40 16 40 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.03 0.90 8.03 -2.39 -0.02 0.88 16 42 H 0.34 11.46 6.88 -89.69 -0.62 10.84 16 43 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 45 H 0.03 1.35 6.82 -2.39 -0.02 1.33 16 46 H 0.05 2.82 6.02 -2.39 -0.01 2.81 16 47 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 49 H 0.05 2.72 6.02 -2.39 -0.01 2.71 16 50 H 0.03 1.45 7.60 -2.39 -0.02 1.43 16 51 H 0.26 13.82 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -59.59 398.48 3.77 -55.82 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: 0.28 Total: 26.12 kcal Atomic # 6 Polarization: -46.18 SS G_CDS: 5.58 Total: -40.60 kcal Atomic # 7 Polarization: -73.54 SS G_CDS: -2.75 Total: -76.29 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -1.37 Total: -10.27 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -59.59 3.77 -55.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459731957.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.096 kcal (2) G-P(sol) polarization free energy of solvation -59.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds