Wall clock time and date at job start Tue Mar 31 2020 12:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47124 * 2 1 4 4 C 1.50704 * 109.47391 * 180.02562 * 3 2 1 5 5 C 1.38231 * 119.99786 * 89.99881 * 4 3 2 6 6 C 1.38238 * 120.00080 * 180.02562 * 5 4 3 7 7 C 1.38246 * 119.99449 * 359.95835 * 6 5 4 8 8 C 1.50705 * 119.99497 * 179.97438 * 7 6 5 9 9 H 1.08997 * 109.47227 * 340.00817 * 8 7 6 10 10 N 1.46496 * 109.46850 * 219.99783 * 8 7 6 11 11 C 1.34774 * 119.99544 * 155.00384 * 10 8 7 12 12 O 1.21279 * 120.00472 * 0.02562 * 11 10 8 13 13 C 1.50706 * 120.00020 * 180.02562 * 11 10 8 14 14 C 1.52997 * 109.47238 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47055 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00290 * 0.02562 * 15 14 13 17 17 C 1.37887 * 120.00079 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99907 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99654 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47022 * 89.99986 * 19 17 15 21 21 H 1.48502 * 109.46769 * 209.99494 * 19 17 15 22 22 H 1.48495 * 109.47280 * 329.99669 * 19 17 15 23 23 C 1.53003 * 109.46565 * 99.99977 * 8 7 6 24 24 C 1.53001 * 109.46666 * 179.97438 * 23 8 7 25 25 C 1.52996 * 109.47657 * 299.99903 * 23 8 7 26 26 C 1.38236 * 120.00138 * 0.27637 * 7 6 5 27 27 C 1.38231 * 119.99875 * 359.51036 * 26 7 6 28 28 H 1.08992 * 109.47575 * 60.00026 * 1 2 3 29 29 H 1.09003 * 109.46754 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47044 * 299.99452 * 1 2 3 31 31 H 1.09001 * 109.46584 * 240.00362 * 2 1 3 32 32 H 1.09001 * 109.47124 * 120.00678 * 2 1 3 33 33 H 1.09001 * 109.47095 * 60.00675 * 3 2 1 34 34 H 1.09001 * 109.47674 * 300.00341 * 3 2 1 35 35 H 1.07998 * 120.00200 * 359.97438 * 5 4 3 36 36 H 1.07997 * 120.00308 * 179.97438 * 6 5 4 37 37 H 0.96994 * 120.00700 * 335.00503 * 10 8 7 38 38 H 1.09001 * 109.46953 * 299.99667 * 13 11 10 39 39 H 1.09000 * 109.47318 * 59.99264 * 13 11 10 40 40 H 1.09001 * 109.46832 * 299.99686 * 14 13 11 41 41 H 1.09004 * 109.47261 * 59.99705 * 14 13 11 42 42 H 0.96999 * 119.99682 * 180.02562 * 18 17 15 43 43 H 1.09005 * 109.46941 * 60.00463 * 23 8 7 44 44 H 1.09001 * 109.46912 * 60.00329 * 24 23 8 45 45 H 1.09007 * 109.47155 * 180.02562 * 24 23 8 46 46 H 1.08992 * 109.47478 * 300.00443 * 24 23 8 47 47 H 1.09007 * 109.47089 * 59.99993 * 25 23 8 48 48 H 1.08994 * 109.47414 * 180.02562 * 25 23 8 49 49 H 1.09001 * 109.46909 * 300.00277 * 25 23 8 50 50 H 1.07995 * 119.99894 * 179.73080 * 26 7 6 51 51 H 1.08003 * 120.00289 * 180.25189 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2376 1.4427 -1.1981 6 6 5.6200 1.4422 -1.1987 7 6 6.3117 1.4424 -0.0017 8 6 7.8187 1.4413 -0.0024 9 1 8.1814 1.0892 -0.9681 10 7 8.3068 0.5538 1.0560 11 6 9.5284 -0.0067 0.9552 12 8 10.2237 0.2240 -0.0113 13 6 10.0304 -0.9201 2.0437 14 6 11.4327 -1.4166 1.6864 15 6 11.9349 -2.3296 2.7752 16 1 11.3156 -2.5354 3.6357 17 6 13.1847 -2.9029 2.6722 18 7 13.6227 -3.7000 3.6221 19 14 14.2555 -2.5474 1.1835 20 1 15.0980 -1.3546 1.4532 21 1 15.1277 -3.7179 0.9103 22 1 13.3923 -2.2872 0.0036 23 6 8.3298 2.8618 0.2470 24 6 9.8598 2.8606 0.2469 25 6 7.8200 3.7887 -0.8583 26 6 5.6210 1.4373 1.1957 27 6 4.2387 1.4423 1.1963 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.6766 1.9564 -0.8899 35 1 3.6972 1.4424 -2.1331 36 1 6.1596 1.4419 -2.1342 37 1 7.7510 0.3695 1.8292 38 1 10.0677 -0.3751 2.9869 39 1 9.3572 -1.7717 2.1426 40 1 11.3958 -1.9616 0.7431 41 1 12.1057 -0.5648 1.5879 42 1 14.5020 -4.1031 3.5499 43 1 7.9671 3.2140 1.2127 44 1 10.2228 2.5081 -0.7186 45 1 10.2239 3.8725 0.4250 46 1 10.2227 2.2003 1.0345 47 1 6.7299 3.7895 -0.8578 48 1 8.1844 4.8005 -0.6808 49 1 8.1826 3.4364 -1.8240 50 1 6.1614 1.4331 2.1307 51 1 3.6990 1.4424 2.1318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000462142666.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:27 Heat of formation + Delta-G solvation = -52.174056 kcal Electronic energy + Delta-G solvation = -26421.769810 eV Core-core repulsion = 22898.420747 eV Total energy + Delta-G solvation = -3523.349062 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.46374 -39.13497 -36.77288 -35.00447 -33.46132 -33.22267 -31.47935 -31.20628 -31.00428 -27.87236 -27.03010 -26.01509 -24.59821 -23.11303 -22.17031 -21.30079 -20.94820 -19.82474 -19.66751 -17.41288 -16.64196 -16.31664 -15.68572 -15.60366 -15.48517 -15.30174 -14.61663 -14.27791 -14.11556 -14.03281 -13.74202 -13.61360 -13.46704 -13.06540 -12.77064 -12.55553 -12.49185 -12.37959 -12.29192 -12.16227 -11.86217 -11.61941 -11.39702 -11.32730 -11.30017 -11.15802 -10.96643 -10.95328 -10.72160 -10.67288 -10.13630 -10.00152 -9.76860 -9.22492 -9.15544 -9.11954 -8.85291 -8.63719 -8.49180 -6.01676 -4.00158 1.07778 1.19309 3.15600 3.38671 3.39301 3.45424 3.56421 3.61597 4.35614 4.49147 4.52134 4.54497 4.71942 4.73535 4.79745 4.91057 4.98349 5.06577 5.09815 5.20144 5.26913 5.33882 5.35815 5.39467 5.41163 5.45677 5.62381 5.63842 5.66562 5.73905 5.76221 5.80811 5.88827 5.92922 5.94564 5.97777 6.09556 6.10738 6.13563 6.19920 6.28624 6.37798 6.39121 6.58515 6.71635 6.75260 6.77663 7.38443 7.45885 7.78504 7.83388 8.52036 8.70177 9.01740 9.61469 11.11195 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016191 B = 0.002632 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.890446 B =10634.869650 C =11787.939469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.080 4.080 4 C -0.086 4.086 5 C -0.115 4.115 6 C -0.104 4.104 7 C -0.085 4.085 8 C 0.188 3.812 9 H 0.093 0.907 10 N -0.736 5.736 11 C 0.512 3.488 12 O -0.534 6.534 13 C -0.123 4.123 14 C 0.003 3.997 15 C -0.524 4.524 16 H 0.072 0.928 17 C 0.068 3.932 18 N -0.904 5.904 19 Si 0.878 3.122 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.261 1.261 23 C -0.098 4.098 24 C -0.141 4.141 25 C -0.145 4.145 26 C -0.110 4.110 27 C -0.113 4.113 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.397 0.603 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.023 0.977 41 H 0.019 0.981 42 H 0.263 0.737 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.044 0.956 46 H 0.059 0.941 47 H 0.056 0.944 48 H 0.054 0.946 49 H 0.055 0.945 50 H 0.122 0.878 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.576 14.409 -8.021 30.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.117 4.117 4 C -0.086 4.086 5 C -0.133 4.133 6 C -0.123 4.123 7 C -0.085 4.085 8 C 0.083 3.917 9 H 0.111 0.889 10 N -0.390 5.390 11 C 0.300 3.700 12 O -0.410 6.410 13 C -0.163 4.163 14 C -0.035 4.035 15 C -0.562 4.562 16 H 0.090 0.910 17 C -0.133 4.133 18 N -0.543 5.543 19 Si 0.705 3.295 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.185 1.185 23 C -0.118 4.118 24 C -0.198 4.198 25 C -0.203 4.203 26 C -0.129 4.129 27 C -0.132 4.132 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.232 0.768 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.041 0.959 41 H 0.037 0.963 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.063 0.937 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.073 0.927 49 H 0.074 0.926 50 H 0.140 0.860 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -24.891 14.442 -8.675 30.056 hybrid contribution 0.366 0.021 -0.233 0.435 sum -24.525 14.462 -8.908 29.833 Atomic orbital electron populations 1.21792 0.95706 1.01782 1.01767 1.21517 0.95619 0.96034 1.02570 1.20631 0.90896 0.97424 1.02776 1.19888 0.95600 0.99875 0.93218 1.20983 0.93940 1.00860 0.97530 1.20996 0.94085 0.99692 0.97492 1.19942 0.94906 1.00095 0.93604 1.19840 0.88423 0.90145 0.93254 0.88881 1.46302 1.18830 1.49636 1.24201 1.21443 0.80109 0.79841 0.88572 1.90654 1.55944 1.61207 1.33192 1.21677 1.01057 0.97573 0.96005 1.19352 0.90223 0.96441 0.97475 1.21124 1.01832 1.27271 1.05998 0.90984 1.24981 0.97722 0.94522 0.96078 1.69914 1.19242 1.31745 1.33383 0.86790 0.80642 0.77732 0.84358 1.20268 1.21491 1.18512 1.21489 0.96946 0.93999 0.99341 1.21895 0.93778 1.00606 1.03527 1.21829 1.00912 0.99021 0.98501 1.20927 0.94166 1.00211 0.97573 1.20987 0.93948 1.00652 0.97565 0.92754 0.92624 0.92714 0.91826 0.91747 0.91085 0.91139 0.86163 0.85941 0.76848 0.89760 0.89717 0.95855 0.96286 0.92748 0.91327 0.91769 0.93679 0.92158 0.92523 0.92653 0.92585 0.86038 0.86101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.12 -0.76 5.92 -26.73 -0.16 -0.92 16 3 C -0.08 -0.51 5.34 -27.89 -0.15 -0.66 16 4 C -0.09 -0.71 5.13 -104.62 -0.54 -1.25 16 5 C -0.12 -0.99 9.70 -39.58 -0.38 -1.38 16 6 C -0.10 -1.01 8.71 -39.58 -0.34 -1.35 16 7 C -0.08 -0.89 4.05 -104.62 -0.42 -1.31 16 8 C 0.19 2.31 2.05 -69.08 -0.14 2.17 16 9 H 0.09 1.32 7.44 -51.93 -0.39 0.93 16 10 N -0.74 -9.90 4.91 -54.93 -0.27 -10.17 16 11 C 0.51 9.10 6.18 -10.98 -0.07 9.04 16 12 O -0.53 -11.26 13.10 5.56 0.07 -11.18 16 13 C -0.12 -2.39 5.64 -27.88 -0.16 -2.54 16 14 C 0.00 0.07 3.33 -27.89 -0.09 -0.02 16 15 C -0.52 -15.07 9.66 -34.44 -0.33 -15.41 16 16 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 17 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 18 N -0.90 -28.17 13.96 55.43 0.77 -27.40 16 19 Si 0.88 22.73 27.47 -169.99 -4.67 18.06 16 20 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.26 -6.72 6.54 56.52 0.37 -6.35 16 23 C -0.10 -1.14 2.68 -90.62 -0.24 -1.38 16 24 C -0.14 -1.99 7.72 37.16 0.29 -1.70 16 25 C -0.14 -1.43 8.79 37.16 0.33 -1.11 16 26 C -0.11 -1.04 9.06 -39.58 -0.36 -1.40 16 27 C -0.11 -0.98 9.70 -39.58 -0.38 -1.36 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 34 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 35 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.12 1.08 8.04 -52.49 -0.42 0.66 16 37 H 0.40 4.40 6.85 -40.82 -0.28 4.12 16 38 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 41 H 0.02 0.49 7.53 -51.93 -0.39 0.09 16 42 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.06 1.00 7.53 -51.93 -0.39 0.61 16 45 H 0.04 0.57 8.14 -51.92 -0.42 0.14 16 46 H 0.06 0.98 5.77 -51.93 -0.30 0.69 16 47 H 0.06 0.53 6.64 -51.93 -0.34 0.18 16 48 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.12 1.01 6.90 -52.49 -0.36 0.65 16 51 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 LS Contribution 401.24 15.07 6.05 6.05 Total: -1.00 -33.02 401.24 -10.11 -43.12 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -9.17 Total: 0.63 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -2.89 Total: -19.11 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.50 Total: -37.57 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.07 Total: -11.18 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.67 Total: 18.06 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.02 -10.11 -43.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000462142666.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.052 kcal (2) G-P(sol) polarization free energy of solvation -33.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds