Wall clock time and date at job start Tue Mar 31 2020 12:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47124 * 2 1 4 4 C 1.50704 * 109.47391 * 180.02562 * 3 2 1 5 5 C 1.38231 * 119.99786 * 89.99881 * 4 3 2 6 6 C 1.38238 * 120.00080 * 180.02562 * 5 4 3 7 7 C 1.38246 * 119.99449 * 359.95835 * 6 5 4 8 8 C 1.50705 * 119.99497 * 179.97438 * 7 6 5 9 9 H 1.08997 * 109.47227 * 340.00817 * 8 7 6 10 10 N 1.46496 * 109.46850 * 219.99783 * 8 7 6 11 11 C 1.34774 * 119.99544 * 155.00384 * 10 8 7 12 12 O 1.21279 * 120.00472 * 0.02562 * 11 10 8 13 13 C 1.50706 * 120.00020 * 180.02562 * 11 10 8 14 14 C 1.52997 * 109.47238 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47055 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00290 * 0.02562 * 15 14 13 17 17 C 1.37887 * 120.00079 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99907 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99654 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47022 * 89.99986 * 19 17 15 21 21 H 1.48502 * 109.46769 * 209.99494 * 19 17 15 22 22 H 1.48495 * 109.47280 * 329.99669 * 19 17 15 23 23 C 1.53003 * 109.46565 * 99.99977 * 8 7 6 24 24 C 1.53001 * 109.46666 * 179.97438 * 23 8 7 25 25 C 1.52996 * 109.47657 * 299.99903 * 23 8 7 26 26 C 1.38236 * 120.00138 * 0.27637 * 7 6 5 27 27 C 1.38231 * 119.99875 * 359.51036 * 26 7 6 28 28 H 1.08992 * 109.47575 * 60.00026 * 1 2 3 29 29 H 1.09003 * 109.46754 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47044 * 299.99452 * 1 2 3 31 31 H 1.09001 * 109.46584 * 240.00362 * 2 1 3 32 32 H 1.09001 * 109.47124 * 120.00678 * 2 1 3 33 33 H 1.09001 * 109.47095 * 60.00675 * 3 2 1 34 34 H 1.09001 * 109.47674 * 300.00341 * 3 2 1 35 35 H 1.07998 * 120.00200 * 359.97438 * 5 4 3 36 36 H 1.07997 * 120.00308 * 179.97438 * 6 5 4 37 37 H 0.96994 * 120.00700 * 335.00503 * 10 8 7 38 38 H 1.09001 * 109.46953 * 299.99667 * 13 11 10 39 39 H 1.09000 * 109.47318 * 59.99264 * 13 11 10 40 40 H 1.09001 * 109.46832 * 299.99686 * 14 13 11 41 41 H 1.09004 * 109.47261 * 59.99705 * 14 13 11 42 42 H 0.96999 * 119.99682 * 180.02562 * 18 17 15 43 43 H 1.09005 * 109.46941 * 60.00463 * 23 8 7 44 44 H 1.09001 * 109.46912 * 60.00329 * 24 23 8 45 45 H 1.09007 * 109.47155 * 180.02562 * 24 23 8 46 46 H 1.08992 * 109.47478 * 300.00443 * 24 23 8 47 47 H 1.09007 * 109.47089 * 59.99993 * 25 23 8 48 48 H 1.08994 * 109.47414 * 180.02562 * 25 23 8 49 49 H 1.09001 * 109.46909 * 300.00277 * 25 23 8 50 50 H 1.07995 * 119.99894 * 179.73080 * 26 7 6 51 51 H 1.08003 * 120.00289 * 180.25189 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2376 1.4427 -1.1981 6 6 5.6200 1.4422 -1.1987 7 6 6.3117 1.4424 -0.0017 8 6 7.8187 1.4413 -0.0024 9 1 8.1814 1.0892 -0.9681 10 7 8.3068 0.5538 1.0560 11 6 9.5284 -0.0067 0.9552 12 8 10.2237 0.2240 -0.0113 13 6 10.0304 -0.9201 2.0437 14 6 11.4327 -1.4166 1.6864 15 6 11.9349 -2.3296 2.7752 16 1 11.3156 -2.5354 3.6357 17 6 13.1847 -2.9029 2.6722 18 7 13.6227 -3.7000 3.6221 19 14 14.2555 -2.5474 1.1835 20 1 15.0980 -1.3546 1.4532 21 1 15.1277 -3.7179 0.9103 22 1 13.3923 -2.2872 0.0036 23 6 8.3298 2.8618 0.2470 24 6 9.8598 2.8606 0.2469 25 6 7.8200 3.7887 -0.8583 26 6 5.6210 1.4373 1.1957 27 6 4.2387 1.4423 1.1963 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.6766 1.9564 -0.8899 35 1 3.6972 1.4424 -2.1331 36 1 6.1596 1.4419 -2.1342 37 1 7.7510 0.3695 1.8292 38 1 10.0677 -0.3751 2.9869 39 1 9.3572 -1.7717 2.1426 40 1 11.3958 -1.9616 0.7431 41 1 12.1057 -0.5648 1.5879 42 1 14.5020 -4.1031 3.5499 43 1 7.9671 3.2140 1.2127 44 1 10.2228 2.5081 -0.7186 45 1 10.2239 3.8725 0.4250 46 1 10.2227 2.2003 1.0345 47 1 6.7299 3.7895 -0.8578 48 1 8.1844 4.8005 -0.6808 49 1 8.1826 3.4364 -1.8240 50 1 6.1614 1.4331 2.1307 51 1 3.6990 1.4424 2.1318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000462142666.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:26 Heat of formation + Delta-G solvation = -69.591860 kcal Electronic energy + Delta-G solvation = -26422.525102 eV Core-core repulsion = 22898.420747 eV Total energy + Delta-G solvation = -3524.104355 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.47860 -40.17522 -37.77601 -35.67796 -35.47105 -34.43915 -33.21071 -32.08680 -31.78654 -28.89645 -28.15435 -27.37199 -25.57210 -23.87662 -23.11144 -22.71279 -21.60809 -21.13836 -20.78467 -19.24182 -17.94026 -17.51107 -16.82639 -16.66563 -16.33714 -16.19852 -16.08831 -15.37935 -15.19297 -15.07928 -14.80415 -14.62560 -14.49170 -14.23590 -13.99758 -13.78763 -13.65873 -13.39567 -13.11852 -13.07864 -12.93348 -12.86619 -12.74901 -12.34214 -12.09885 -12.00027 -11.97218 -11.92997 -11.89836 -11.78020 -11.71984 -11.51239 -11.45994 -11.39652 -10.78482 -10.69164 -10.01716 -9.80046 -9.40969 -8.31932 -6.34592 0.36694 0.51416 1.32539 1.34370 1.49619 1.73886 2.26657 2.34460 2.83662 3.03742 3.55396 3.86709 3.92174 3.92314 4.03192 4.06085 4.15573 4.21626 4.28298 4.34064 4.39973 4.47450 4.49090 4.55504 4.61745 4.67192 4.75450 4.79050 4.85675 4.91196 4.96053 5.00151 5.01334 5.03401 5.09417 5.15443 5.18071 5.28883 5.31392 5.32472 5.35984 5.44820 5.45324 5.46821 5.48584 5.53529 5.61384 5.75205 5.75831 6.10637 6.23426 6.60460 6.71823 7.30569 7.35304 8.83784 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016191 B = 0.002632 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.890446 B =10634.869650 C =11787.939469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.077 4.077 4 C -0.086 4.086 5 C -0.119 4.119 6 C -0.113 4.113 7 C -0.096 4.096 8 C 0.192 3.808 9 H 0.071 0.929 10 N -0.716 5.716 11 C 0.517 3.483 12 O -0.571 6.571 13 C -0.118 4.118 14 C 0.008 3.992 15 C -0.529 4.529 16 H 0.049 0.951 17 C 0.012 3.988 18 N -0.944 5.944 19 Si 0.939 3.061 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.261 1.261 23 C -0.092 4.092 24 C -0.137 4.137 25 C -0.138 4.138 26 C -0.116 4.116 27 C -0.118 4.118 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.137 0.863 36 H 0.125 0.875 37 H 0.410 0.590 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.009 0.991 41 H 0.009 0.991 42 H 0.267 0.733 43 H 0.079 0.921 44 H 0.042 0.958 45 H 0.058 0.942 46 H 0.035 0.965 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.051 0.949 50 H 0.131 0.869 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.739 15.868 -8.603 33.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.114 4.114 4 C -0.086 4.086 5 C -0.137 4.137 6 C -0.131 4.131 7 C -0.097 4.097 8 C 0.088 3.912 9 H 0.089 0.911 10 N -0.370 5.370 11 C 0.306 3.694 12 O -0.450 6.450 13 C -0.158 4.158 14 C -0.030 4.030 15 C -0.567 4.567 16 H 0.067 0.933 17 C -0.185 4.185 18 N -0.584 5.584 19 Si 0.764 3.236 20 H -0.194 1.194 21 H -0.204 1.204 22 H -0.186 1.186 23 C -0.112 4.112 24 C -0.194 4.194 25 C -0.196 4.196 26 C -0.134 4.134 27 C -0.136 4.136 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.154 0.846 36 H 0.143 0.857 37 H 0.248 0.752 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.027 0.973 41 H 0.028 0.972 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.061 0.939 45 H 0.077 0.923 46 H 0.054 0.946 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.070 0.930 50 H 0.149 0.851 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -27.103 15.915 -9.238 32.760 hybrid contribution 0.931 -0.441 0.001 1.030 sum -26.172 15.474 -9.237 31.777 Atomic orbital electron populations 1.21779 0.94880 1.01953 1.02290 1.21491 0.96332 0.95891 1.01899 1.20652 0.89530 0.97525 1.03702 1.20171 0.96710 0.98695 0.93018 1.21205 0.93584 1.00417 0.98531 1.21112 0.94735 0.99864 0.97408 1.19761 0.93407 1.02037 0.94500 1.19834 0.89911 0.89950 0.91540 0.91051 1.46071 1.17366 1.48616 1.24903 1.21019 0.81122 0.79776 0.87523 1.90648 1.57314 1.62651 1.34415 1.21504 0.98265 0.98755 0.97299 1.19188 0.93280 0.95107 0.95407 1.21442 1.01589 1.27476 1.06161 0.93274 1.25816 0.99327 0.94528 0.98841 1.70026 1.20022 1.33050 1.35319 0.85818 0.78980 0.78088 0.80760 1.19358 1.20390 1.18572 1.21448 0.95092 0.94016 1.00643 1.21831 0.95684 1.00588 1.01333 1.21766 1.01391 0.98914 0.97508 1.21070 0.94748 1.00114 0.97503 1.21231 0.93720 1.00160 0.98515 0.92217 0.92679 0.92211 0.92518 0.92432 0.90173 0.90239 0.84564 0.85703 0.75202 0.88196 0.88407 0.97258 0.97238 0.92396 0.90275 0.93863 0.92317 0.94633 0.91615 0.91686 0.92955 0.85107 0.84411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 71.98 0.71 -0.59 16 2 C -0.12 -1.27 5.92 30.59 0.18 -1.09 16 3 C -0.08 -0.78 5.34 29.85 0.16 -0.62 16 4 C -0.09 -1.22 5.13 -19.86 -0.10 -1.32 16 5 C -0.12 -1.81 9.70 22.27 0.22 -1.60 16 6 C -0.11 -2.01 8.71 22.27 0.19 -1.82 16 7 C -0.10 -1.86 4.05 -19.86 -0.08 -1.94 16 8 C 0.19 4.56 2.05 44.25 0.09 4.65 16 9 H 0.07 2.04 7.44 -2.39 -0.02 2.02 16 10 N -0.72 -18.60 4.91 -446.10 -2.19 -20.79 16 11 C 0.52 18.29 6.18 87.66 0.54 18.83 16 12 O -0.57 -24.41 13.10 -3.02 -0.04 -24.45 16 13 C -0.12 -4.54 5.64 29.85 0.17 -4.37 16 14 C 0.01 0.41 3.33 29.85 0.10 0.51 16 15 C -0.53 -30.84 9.66 25.60 0.25 -30.59 16 16 H 0.05 3.02 7.99 -2.91 -0.02 2.99 16 17 C 0.01 0.75 5.47 84.66 0.46 1.21 16 18 N -0.94 -59.59 13.96 21.45 0.30 -59.29 16 19 Si 0.94 47.31 27.47 68.60 1.88 49.19 16 20 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16 21 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 22 H -0.26 -13.10 6.54 99.48 0.65 -12.45 16 23 C -0.09 -2.04 2.68 -10.79 -0.03 -2.07 16 24 C -0.14 -3.84 7.72 71.98 0.56 -3.28 16 25 C -0.14 -2.51 8.79 71.98 0.63 -1.87 16 26 C -0.12 -1.94 9.06 22.27 0.20 -1.74 16 27 C -0.12 -1.74 9.70 22.27 0.22 -1.53 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.08 0.69 8.09 -2.39 -0.02 0.67 16 34 H 0.08 0.69 8.08 -2.39 -0.02 0.67 16 35 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 36 H 0.13 2.09 8.04 -2.91 -0.02 2.07 16 37 H 0.41 8.39 6.85 -92.71 -0.64 7.76 16 38 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 39 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 40 H 0.01 0.48 7.16 -2.39 -0.02 0.46 16 41 H 0.01 0.48 7.53 -2.38 -0.02 0.46 16 42 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 43 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 44 H 0.04 1.37 7.53 -2.39 -0.02 1.35 16 45 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 46 H 0.03 1.15 5.77 -2.39 -0.01 1.14 16 47 H 0.06 1.09 6.64 -2.38 -0.02 1.07 16 48 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.13 1.86 6.90 -2.91 -0.02 1.84 16 51 H 0.14 1.52 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -71.63 401.24 4.61 -67.02 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.19 Total: 17.56 kcal Atomic # 6 Polarization: -33.71 SS G_CDS: 4.47 Total: -29.24 kcal Atomic # 7 Polarization: -78.19 SS G_CDS: -1.89 Total: -80.08 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.04 Total: -24.45 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.88 Total: 49.19 kcal Total: -71.63 4.61 -67.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000462142666.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.574 kcal (2) G-P(sol) polarization free energy of solvation -71.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds