Wall clock time and date at job start Tue Mar 31 2020 12:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47051 * 2 1 4 4 C 1.50696 * 109.47152 * 180.02562 * 3 2 1 5 5 C 1.38230 * 120.00346 * 89.99522 * 4 3 2 6 6 C 1.38235 * 120.00326 * 180.02562 * 5 4 3 7 7 C 1.38234 * 119.99814 * 359.97438 * 6 5 4 8 8 C 1.50706 * 120.00196 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.46534 * 20.00633 * 8 7 6 10 10 N 1.46497 * 109.46867 * 140.00054 * 8 7 6 11 11 C 1.34784 * 119.99857 * 205.00109 * 10 8 7 12 12 O 1.21279 * 120.00043 * 0.02562 * 11 10 8 13 13 C 1.50697 * 119.99855 * 180.02562 * 11 10 8 14 14 C 1.53001 * 109.47081 * 179.97438 * 13 11 10 15 15 C 1.50697 * 109.47081 * 180.02562 * 14 13 11 16 16 H 1.07993 * 120.00523 * 0.02562 * 15 14 13 17 17 C 1.37886 * 119.99869 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00068 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99876 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47369 * 90.00298 * 19 17 15 21 21 H 1.48503 * 109.46939 * 210.00472 * 19 17 15 22 22 H 1.48504 * 109.47257 * 330.00261 * 19 17 15 23 23 C 1.52999 * 109.47046 * 260.00428 * 8 7 6 24 24 C 1.52995 * 109.47241 * 59.99775 * 23 8 7 25 25 C 1.53006 * 109.46754 * 180.02562 * 23 8 7 26 26 C 1.38239 * 120.00062 * 0.02871 * 7 6 5 27 27 C 1.38235 * 120.00123 * 359.97128 * 26 7 6 28 28 H 1.08998 * 109.46644 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47147 * 300.00269 * 1 2 3 30 30 H 1.09005 * 109.46508 * 60.00557 * 1 2 3 31 31 H 1.08999 * 109.47147 * 239.99731 * 2 1 3 32 32 H 1.08997 * 109.46666 * 119.99726 * 2 1 3 33 33 H 1.08999 * 109.47365 * 59.99864 * 3 2 1 34 34 H 1.09000 * 109.46914 * 299.99874 * 3 2 1 35 35 H 1.08000 * 120.00356 * 359.97438 * 5 4 3 36 36 H 1.08000 * 120.00616 * 179.70664 * 6 5 4 37 37 H 0.97003 * 120.00248 * 25.00490 * 10 8 7 38 38 H 1.08993 * 109.47503 * 299.99992 * 13 11 10 39 39 H 1.08999 * 109.47276 * 60.00275 * 13 11 10 40 40 H 1.09000 * 109.47618 * 300.00372 * 14 13 11 41 41 H 1.09008 * 109.46537 * 59.99897 * 14 13 11 42 42 H 0.97002 * 119.99581 * 179.97438 * 18 17 15 43 43 H 1.08998 * 109.47165 * 299.99333 * 23 8 7 44 44 H 1.09001 * 109.47154 * 60.00160 * 24 23 8 45 45 H 1.09005 * 109.47055 * 179.97438 * 24 23 8 46 46 H 1.08991 * 109.47292 * 299.99660 * 24 23 8 47 47 H 1.08999 * 109.47069 * 59.99837 * 25 23 8 48 48 H 1.09001 * 109.46645 * 180.02562 * 25 23 8 49 49 H 1.08998 * 109.46660 * 299.99544 * 25 23 8 50 50 H 1.08005 * 120.00087 * 180.02562 * 26 7 6 51 51 H 1.07999 * 120.00181 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2377 1.4426 -1.1980 6 6 5.6201 1.4421 -1.1986 7 6 6.3117 1.4420 -0.0017 8 6 7.8188 1.4409 -0.0022 9 1 8.1819 1.7919 -0.9682 10 7 8.3081 2.3287 1.0553 11 6 9.5305 2.8875 0.9542 12 8 10.2251 2.6555 -0.0125 13 6 10.0340 3.8003 2.0424 14 6 11.4371 4.2947 1.6846 15 6 11.9409 5.2071 2.7731 16 1 11.3225 5.4133 3.6341 17 6 13.1915 5.7785 2.6697 18 7 13.6310 6.5751 3.6193 19 14 14.2614 5.4212 1.1807 20 1 13.9877 6.4259 0.1219 21 1 15.6924 5.4910 1.5713 22 1 13.9547 4.0627 0.6652 23 6 8.3278 0.0200 0.2485 24 6 7.8166 -0.9072 -0.8560 25 6 9.8578 0.0190 0.2486 26 6 5.6210 1.4419 1.1958 27 6 4.2386 1.4424 1.1963 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.6974 1.4422 -2.1331 36 1 6.1598 1.4374 -2.1340 37 1 7.7524 2.5145 1.8284 38 1 9.3623 4.6529 2.1413 39 1 10.0708 3.2554 2.9857 40 1 12.1087 3.4419 1.5860 41 1 11.4006 4.8395 0.7411 42 1 14.5109 6.9768 3.5466 43 1 7.9646 -0.3309 1.2145 44 1 8.1799 -0.5563 -1.8219 45 1 8.1797 -1.9194 -0.6775 46 1 6.7267 -0.9064 -0.8555 47 1 10.2215 0.6795 1.0357 48 1 10.2204 -0.9933 0.4268 49 1 10.2213 0.3701 -0.7172 50 1 6.1614 1.4422 2.1309 51 1 3.6990 1.4427 2.1318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000462143098.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:30 Heat of formation + Delta-G solvation = -52.226922 kcal Electronic energy + Delta-G solvation = -26407.670719 eV Core-core repulsion = 22884.319364 eV Total energy + Delta-G solvation = -3523.351355 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.46365 -39.13554 -36.77614 -35.01850 -33.46096 -33.22068 -31.48519 -31.20689 -31.00667 -27.87806 -27.03048 -26.01789 -24.60122 -23.11292 -22.18961 -21.30202 -20.95068 -19.82618 -19.66635 -17.41207 -16.64588 -16.31721 -15.70170 -15.60175 -15.48507 -15.29770 -14.62774 -14.31808 -14.09066 -13.91784 -13.88500 -13.61432 -13.42228 -13.17670 -12.66756 -12.54567 -12.45909 -12.42240 -12.37052 -12.10859 -11.84365 -11.63352 -11.46454 -11.38864 -11.30144 -11.09627 -10.98243 -10.95343 -10.71848 -10.67834 -10.12161 -10.02024 -9.76241 -9.22507 -9.15712 -9.11985 -8.84883 -8.64059 -8.49178 -6.01637 -4.00128 1.07742 1.19301 3.15622 3.38694 3.39253 3.45432 3.56296 3.61726 4.35439 4.48197 4.52128 4.52932 4.70816 4.71590 4.79336 4.91270 4.98142 5.04972 5.09223 5.20202 5.26698 5.33925 5.35737 5.37934 5.40559 5.44348 5.59946 5.63722 5.66386 5.72196 5.75759 5.80126 5.88332 5.90373 5.94517 5.97764 6.09634 6.10657 6.13703 6.19883 6.28630 6.37813 6.39047 6.58643 6.71700 6.75291 6.77641 7.38600 7.45788 7.78537 7.83431 8.52067 8.70216 9.01781 9.61504 11.11211 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.021478 B = 0.002466 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.372900 B =11350.525826 C =12115.364397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.081 4.081 4 C -0.086 4.086 5 C -0.115 4.115 6 C -0.104 4.104 7 C -0.085 4.085 8 C 0.188 3.812 9 H 0.093 0.907 10 N -0.736 5.736 11 C 0.512 3.488 12 O -0.534 6.534 13 C -0.123 4.123 14 C 0.003 3.997 15 C -0.524 4.524 16 H 0.072 0.928 17 C 0.068 3.932 18 N -0.904 5.904 19 Si 0.878 3.122 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.261 1.261 23 C -0.098 4.098 24 C -0.145 4.145 25 C -0.141 4.141 26 C -0.110 4.110 27 C -0.113 4.113 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.397 0.603 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.023 0.977 41 H 0.019 0.981 42 H 0.263 0.737 43 H 0.068 0.932 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.059 0.941 48 H 0.044 0.956 49 H 0.063 0.937 50 H 0.122 0.878 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.571 -15.853 -7.975 31.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.118 4.118 4 C -0.086 4.086 5 C -0.133 4.133 6 C -0.123 4.123 7 C -0.085 4.085 8 C 0.083 3.917 9 H 0.111 0.889 10 N -0.390 5.390 11 C 0.300 3.700 12 O -0.410 6.410 13 C -0.163 4.163 14 C -0.035 4.035 15 C -0.562 4.562 16 H 0.090 0.910 17 C -0.133 4.133 18 N -0.543 5.543 19 Si 0.705 3.295 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.185 1.185 23 C -0.118 4.118 24 C -0.203 4.203 25 C -0.198 4.198 26 C -0.129 4.129 27 C -0.131 4.131 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.232 0.768 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.042 0.958 41 H 0.037 0.963 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.063 0.937 49 H 0.082 0.918 50 H 0.140 0.860 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -24.883 -15.896 -8.626 30.761 hybrid contribution 0.341 0.033 -0.263 0.432 sum -24.542 -15.863 -8.889 30.545 Atomic orbital electron populations 1.21796 0.95707 1.01715 1.01864 1.21510 0.95622 0.96083 1.02408 1.20636 0.90921 0.97356 1.02898 1.19882 0.95587 0.99883 0.93218 1.20982 0.93940 1.00855 0.97530 1.20993 0.94085 0.99694 0.97494 1.19941 0.94907 1.00091 0.93604 1.19841 0.88414 0.90135 0.93273 0.88883 1.46306 1.18761 1.49651 1.24253 1.21443 0.80107 0.79837 0.88569 1.90654 1.56011 1.61161 1.33178 1.21675 1.01034 0.97582 0.96028 1.19354 0.90342 0.96657 0.97151 1.21124 1.01784 1.27277 1.06054 0.90979 1.24979 0.97708 0.94488 0.96118 1.69915 1.19212 1.31708 1.33435 0.86793 0.79380 0.79981 0.83371 1.20281 1.21490 1.18509 1.21488 0.96951 0.93992 0.99337 1.21828 1.00902 0.99019 0.98509 1.21895 0.93771 1.00603 1.03530 1.20931 0.94164 1.00207 0.97575 1.20989 0.93950 1.00646 0.97563 0.92688 0.92667 0.92714 0.91888 0.91847 0.91024 0.91086 0.86164 0.85941 0.76845 0.89738 0.89729 0.95830 0.96301 0.92752 0.91330 0.92586 0.92658 0.92528 0.92150 0.93681 0.91779 0.86034 0.86101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.16 0.37 -0.39 16 2 C -0.12 -0.70 5.92 -26.73 -0.16 -0.86 16 3 C -0.08 -0.52 5.34 -27.89 -0.15 -0.67 16 4 C -0.09 -0.71 5.13 -104.62 -0.54 -1.25 16 5 C -0.12 -0.99 9.70 -39.59 -0.38 -1.38 16 6 C -0.10 -1.01 8.71 -39.58 -0.34 -1.35 16 7 C -0.08 -0.88 4.05 -104.62 -0.42 -1.31 16 8 C 0.19 2.31 2.05 -69.08 -0.14 2.17 16 9 H 0.09 1.32 7.44 -51.93 -0.39 0.93 16 10 N -0.74 -9.91 4.91 -54.93 -0.27 -10.18 16 11 C 0.51 9.11 6.18 -10.98 -0.07 9.04 16 12 O -0.53 -11.26 13.11 5.56 0.07 -11.19 16 13 C -0.12 -2.39 5.64 -27.88 -0.16 -2.55 16 14 C 0.00 0.07 3.33 -27.88 -0.09 -0.02 16 15 C -0.52 -15.08 9.66 -34.44 -0.33 -15.42 16 16 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 17 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 18 N -0.90 -28.16 13.96 55.43 0.77 -27.39 16 19 Si 0.88 22.74 27.47 -169.99 -4.67 18.07 16 20 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.26 -6.71 6.54 56.52 0.37 -6.34 16 23 C -0.10 -1.14 2.68 -90.62 -0.24 -1.38 16 24 C -0.14 -1.43 8.79 37.16 0.33 -1.10 16 25 C -0.14 -1.99 7.72 37.16 0.29 -1.70 16 26 C -0.11 -1.04 9.06 -39.58 -0.36 -1.40 16 27 C -0.11 -0.98 9.70 -39.58 -0.38 -1.36 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 34 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 35 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.12 1.08 8.04 -52.49 -0.42 0.66 16 37 H 0.40 4.40 6.87 -40.82 -0.28 4.12 16 38 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 39 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 40 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 41 H 0.02 0.48 7.53 -51.92 -0.39 0.09 16 42 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.53 6.64 -51.93 -0.34 0.18 16 47 H 0.06 0.99 5.78 -51.93 -0.30 0.69 16 48 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.06 1.00 7.53 -51.93 -0.39 0.61 16 50 H 0.12 1.01 6.92 -52.48 -0.36 0.65 16 51 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 401.28 15.07 6.05 6.05 Total: -1.00 -33.02 401.28 -10.11 -43.13 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -9.17 Total: 0.50 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -2.89 Total: -18.99 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.50 Total: -37.56 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.07 Total: -11.19 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.67 Total: 18.07 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.02 -10.11 -43.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000462143098.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.099 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds