Wall clock time and date at job start Tue Mar 31 2020 12:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47051 * 2 1 4 4 C 1.50696 * 109.47152 * 180.02562 * 3 2 1 5 5 C 1.38230 * 120.00346 * 89.99522 * 4 3 2 6 6 C 1.38235 * 120.00326 * 180.02562 * 5 4 3 7 7 C 1.38234 * 119.99814 * 359.97438 * 6 5 4 8 8 C 1.50706 * 120.00196 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.46534 * 20.00633 * 8 7 6 10 10 N 1.46497 * 109.46867 * 140.00054 * 8 7 6 11 11 C 1.34784 * 119.99857 * 205.00109 * 10 8 7 12 12 O 1.21279 * 120.00043 * 0.02562 * 11 10 8 13 13 C 1.50697 * 119.99855 * 180.02562 * 11 10 8 14 14 C 1.53001 * 109.47081 * 179.97438 * 13 11 10 15 15 C 1.50697 * 109.47081 * 180.02562 * 14 13 11 16 16 H 1.07993 * 120.00523 * 0.02562 * 15 14 13 17 17 C 1.37886 * 119.99869 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00068 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99876 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47369 * 90.00298 * 19 17 15 21 21 H 1.48503 * 109.46939 * 210.00472 * 19 17 15 22 22 H 1.48504 * 109.47257 * 330.00261 * 19 17 15 23 23 C 1.52999 * 109.47046 * 260.00428 * 8 7 6 24 24 C 1.52995 * 109.47241 * 59.99775 * 23 8 7 25 25 C 1.53006 * 109.46754 * 180.02562 * 23 8 7 26 26 C 1.38239 * 120.00062 * 0.02871 * 7 6 5 27 27 C 1.38235 * 120.00123 * 359.97128 * 26 7 6 28 28 H 1.08998 * 109.46644 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47147 * 300.00269 * 1 2 3 30 30 H 1.09005 * 109.46508 * 60.00557 * 1 2 3 31 31 H 1.08999 * 109.47147 * 239.99731 * 2 1 3 32 32 H 1.08997 * 109.46666 * 119.99726 * 2 1 3 33 33 H 1.08999 * 109.47365 * 59.99864 * 3 2 1 34 34 H 1.09000 * 109.46914 * 299.99874 * 3 2 1 35 35 H 1.08000 * 120.00356 * 359.97438 * 5 4 3 36 36 H 1.08000 * 120.00616 * 179.70664 * 6 5 4 37 37 H 0.97003 * 120.00248 * 25.00490 * 10 8 7 38 38 H 1.08993 * 109.47503 * 299.99992 * 13 11 10 39 39 H 1.08999 * 109.47276 * 60.00275 * 13 11 10 40 40 H 1.09000 * 109.47618 * 300.00372 * 14 13 11 41 41 H 1.09008 * 109.46537 * 59.99897 * 14 13 11 42 42 H 0.97002 * 119.99581 * 179.97438 * 18 17 15 43 43 H 1.08998 * 109.47165 * 299.99333 * 23 8 7 44 44 H 1.09001 * 109.47154 * 60.00160 * 24 23 8 45 45 H 1.09005 * 109.47055 * 179.97438 * 24 23 8 46 46 H 1.08991 * 109.47292 * 299.99660 * 24 23 8 47 47 H 1.08999 * 109.47069 * 59.99837 * 25 23 8 48 48 H 1.09001 * 109.46645 * 180.02562 * 25 23 8 49 49 H 1.08998 * 109.46660 * 299.99544 * 25 23 8 50 50 H 1.08005 * 120.00087 * 180.02562 * 26 7 6 51 51 H 1.07999 * 120.00181 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2377 1.4426 -1.1980 6 6 5.6201 1.4421 -1.1986 7 6 6.3117 1.4420 -0.0017 8 6 7.8188 1.4409 -0.0022 9 1 8.1819 1.7919 -0.9682 10 7 8.3081 2.3287 1.0553 11 6 9.5305 2.8875 0.9542 12 8 10.2251 2.6555 -0.0125 13 6 10.0340 3.8003 2.0424 14 6 11.4371 4.2947 1.6846 15 6 11.9409 5.2071 2.7731 16 1 11.3225 5.4133 3.6341 17 6 13.1915 5.7785 2.6697 18 7 13.6310 6.5751 3.6193 19 14 14.2614 5.4212 1.1807 20 1 13.9877 6.4259 0.1219 21 1 15.6924 5.4910 1.5713 22 1 13.9547 4.0627 0.6652 23 6 8.3278 0.0200 0.2485 24 6 7.8166 -0.9072 -0.8560 25 6 9.8578 0.0190 0.2486 26 6 5.6210 1.4419 1.1958 27 6 4.2386 1.4424 1.1963 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.6974 1.4422 -2.1331 36 1 6.1598 1.4374 -2.1340 37 1 7.7524 2.5145 1.8284 38 1 9.3623 4.6529 2.1413 39 1 10.0708 3.2554 2.9857 40 1 12.1087 3.4419 1.5860 41 1 11.4006 4.8395 0.7411 42 1 14.5109 6.9768 3.5466 43 1 7.9646 -0.3309 1.2145 44 1 8.1799 -0.5563 -1.8219 45 1 8.1797 -1.9194 -0.6775 46 1 6.7267 -0.9064 -0.8555 47 1 10.2215 0.6795 1.0357 48 1 10.2204 -0.9933 0.4268 49 1 10.2213 0.3701 -0.7172 50 1 6.1614 1.4422 2.1309 51 1 3.6990 1.4427 2.1318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000462143098.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:29 Heat of formation + Delta-G solvation = -69.640102 kcal Electronic energy + Delta-G solvation = -26408.425811 eV Core-core repulsion = 22884.319364 eV Total energy + Delta-G solvation = -3524.106447 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.47755 -40.17533 -37.77595 -35.67546 -35.47034 -34.43729 -33.21024 -32.08447 -31.78606 -28.89614 -28.15597 -27.37239 -25.57049 -23.87501 -23.10950 -22.71251 -21.60204 -21.13785 -20.78716 -19.24093 -17.93931 -17.51023 -16.83187 -16.66542 -16.32867 -16.20537 -16.07833 -15.38216 -15.19098 -15.07306 -14.81616 -14.62239 -14.40810 -14.23262 -14.16274 -13.72371 -13.62934 -13.38893 -13.21239 -13.00160 -12.90432 -12.86839 -12.69073 -12.44349 -12.10094 -12.02328 -11.98377 -11.92574 -11.86268 -11.75389 -11.71799 -11.52307 -11.45310 -11.39410 -10.78489 -10.69311 -10.01247 -9.80030 -9.41102 -8.31881 -6.34532 0.36768 0.51443 1.32521 1.34307 1.49508 1.73959 2.26743 2.34431 2.83827 3.03799 3.55593 3.86114 3.91503 3.92721 4.03104 4.06425 4.15256 4.22066 4.29204 4.33769 4.40008 4.47598 4.49250 4.55812 4.62141 4.67136 4.75211 4.78714 4.85639 4.91962 4.95849 5.00162 5.01334 5.04136 5.09434 5.15449 5.17958 5.28906 5.32013 5.32516 5.35806 5.44393 5.45674 5.47131 5.48941 5.53552 5.61438 5.75229 5.75842 6.10631 6.23491 6.60619 6.71877 7.30625 7.35418 8.83791 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.021478 B = 0.002466 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.372900 B =11350.525826 C =12115.364397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.079 4.079 4 C -0.086 4.086 5 C -0.120 4.120 6 C -0.113 4.113 7 C -0.097 4.097 8 C 0.192 3.808 9 H 0.072 0.928 10 N -0.716 5.716 11 C 0.517 3.483 12 O -0.571 6.571 13 C -0.118 4.118 14 C 0.008 3.992 15 C -0.529 4.529 16 H 0.049 0.951 17 C 0.013 3.987 18 N -0.943 5.943 19 Si 0.939 3.061 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.261 1.261 23 C -0.092 4.092 24 C -0.138 4.138 25 C -0.137 4.137 26 C -0.116 4.116 27 C -0.119 4.119 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.136 0.864 36 H 0.125 0.875 37 H 0.411 0.589 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.010 0.990 41 H 0.008 0.992 42 H 0.267 0.733 43 H 0.079 0.921 44 H 0.051 0.949 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.034 0.966 48 H 0.058 0.942 49 H 0.042 0.958 50 H 0.131 0.869 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.746 -17.120 -8.593 33.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.116 4.116 4 C -0.086 4.086 5 C -0.137 4.137 6 C -0.131 4.131 7 C -0.097 4.097 8 C 0.088 3.912 9 H 0.090 0.910 10 N -0.370 5.370 11 C 0.306 3.694 12 O -0.450 6.450 13 C -0.158 4.158 14 C -0.030 4.030 15 C -0.567 4.567 16 H 0.067 0.933 17 C -0.185 4.185 18 N -0.584 5.584 19 Si 0.763 3.237 20 H -0.194 1.194 21 H -0.204 1.204 22 H -0.185 1.185 23 C -0.112 4.112 24 C -0.196 4.196 25 C -0.194 4.194 26 C -0.134 4.134 27 C -0.136 4.136 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.154 0.846 36 H 0.143 0.857 37 H 0.248 0.752 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.029 0.971 41 H 0.026 0.974 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.071 0.929 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.053 0.947 48 H 0.077 0.923 49 H 0.061 0.939 50 H 0.149 0.851 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -27.108 -17.175 -9.226 33.391 hybrid contribution 0.909 0.425 -0.017 1.004 sum -26.199 -16.750 -9.243 32.440 Atomic orbital electron populations 1.21787 0.95013 1.02009 1.02173 1.21475 0.96194 0.95596 1.02079 1.20663 0.89578 0.97816 1.03535 1.20165 0.96683 0.98691 0.93026 1.21201 0.93585 1.00436 0.98522 1.21110 0.94728 0.99850 0.97413 1.19758 0.93403 1.02045 0.94499 1.19833 0.89900 0.89925 0.91569 0.91033 1.46074 1.17296 1.48629 1.24954 1.21019 0.81120 0.79772 0.87519 1.90648 1.57380 1.62607 1.34408 1.21502 0.98248 0.98780 0.97300 1.19191 0.93334 0.95220 0.95258 1.21443 1.01561 1.27471 1.06227 0.93259 1.25811 0.99300 0.94494 0.98878 1.70025 1.19986 1.33013 1.35358 0.85824 0.78036 0.79774 0.80042 1.19444 1.20360 1.18525 1.21446 0.95075 0.94031 1.00636 1.21764 1.01374 0.98910 0.97521 1.21830 0.95698 1.00573 1.01321 1.21073 0.94737 1.00096 0.97507 1.21231 0.93724 1.00180 0.98503 0.92443 0.92384 0.92396 0.92215 0.92196 0.90401 0.90478 0.84574 0.85693 0.75192 0.88370 0.88214 0.97113 0.97374 0.92400 0.90283 0.92947 0.91701 0.91625 0.94654 0.92329 0.93879 0.85101 0.84424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 71.98 0.71 -0.47 16 2 C -0.12 -1.10 5.92 30.60 0.18 -0.92 16 3 C -0.08 -0.81 5.34 29.85 0.16 -0.65 16 4 C -0.09 -1.22 5.13 -19.87 -0.10 -1.32 16 5 C -0.12 -1.81 9.70 22.27 0.22 -1.60 16 6 C -0.11 -2.01 8.71 22.27 0.19 -1.81 16 7 C -0.10 -1.86 4.05 -19.86 -0.08 -1.94 16 8 C 0.19 4.56 2.05 44.25 0.09 4.65 16 9 H 0.07 2.04 7.44 -2.39 -0.02 2.02 16 10 N -0.72 -18.58 4.91 -446.09 -2.19 -20.77 16 11 C 0.52 18.28 6.18 87.65 0.54 18.82 16 12 O -0.57 -24.41 13.11 -3.03 -0.04 -24.45 16 13 C -0.12 -4.54 5.64 29.85 0.17 -4.37 16 14 C 0.01 0.40 3.33 29.85 0.10 0.50 16 15 C -0.53 -30.86 9.66 25.60 0.25 -30.61 16 16 H 0.05 3.02 7.99 -2.91 -0.02 3.00 16 17 C 0.01 0.77 5.47 84.66 0.46 1.23 16 18 N -0.94 -59.54 13.96 21.45 0.30 -59.24 16 19 Si 0.94 47.30 27.47 68.60 1.88 49.19 16 20 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 21 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 22 H -0.26 -13.06 6.54 99.48 0.65 -12.41 16 23 C -0.09 -2.04 2.68 -10.79 -0.03 -2.07 16 24 C -0.14 -2.51 8.79 71.98 0.63 -1.88 16 25 C -0.14 -3.85 7.72 71.98 0.56 -3.29 16 26 C -0.12 -1.94 9.06 22.27 0.20 -1.73 16 27 C -0.12 -1.74 9.70 22.27 0.22 -1.53 16 28 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.08 0.72 8.09 -2.39 -0.02 0.70 16 34 H 0.08 0.71 8.08 -2.39 -0.02 0.69 16 35 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 36 H 0.13 2.09 8.04 -2.91 -0.02 2.06 16 37 H 0.41 8.37 6.87 -92.71 -0.64 7.74 16 38 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 39 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 40 H 0.01 0.55 7.16 -2.39 -0.02 0.54 16 41 H 0.01 0.41 7.53 -2.38 -0.02 0.39 16 42 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 43 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 46 H 0.06 1.09 6.64 -2.39 -0.02 1.07 16 47 H 0.03 1.15 5.78 -2.39 -0.01 1.14 16 48 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.04 1.37 7.53 -2.39 -0.02 1.35 16 50 H 0.13 1.86 6.92 -2.91 -0.02 1.84 16 51 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -71.57 401.28 4.61 -66.96 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.19 Total: 17.31 kcal Atomic # 6 Polarization: -33.46 SS G_CDS: 4.47 Total: -28.99 kcal Atomic # 7 Polarization: -78.12 SS G_CDS: -1.89 Total: -80.01 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.04 Total: -24.45 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 1.88 Total: 49.19 kcal Total: -71.57 4.61 -66.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000462143098.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.680 kcal (2) G-P(sol) polarization free energy of solvation -71.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds