Wall clock time and date at job start Tue Mar 31 2020 12:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47183 * 2 1 4 4 C 1.50703 * 109.47270 * 120.00282 * 2 1 3 5 5 C 1.38232 * 119.99938 * 119.99804 * 4 2 1 6 6 C 1.38228 * 119.99891 * 180.02562 * 5 4 2 7 7 C 1.38237 * 120.00022 * 359.95466 * 6 5 4 8 8 C 1.50703 * 119.99976 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.46980 * 340.00020 * 8 7 6 10 10 N 1.46492 * 109.47096 * 220.00071 * 8 7 6 11 11 C 1.34779 * 120.00234 * 155.00123 * 10 8 7 12 12 O 1.21283 * 119.99840 * 359.97438 * 11 10 8 13 13 C 1.50701 * 120.00108 * 179.97438 * 11 10 8 14 14 C 1.53002 * 109.47061 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.47061 * 180.02562 * 14 13 11 16 16 H 1.07994 * 119.99747 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99913 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00123 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 119.99726 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47099 * 90.00452 * 19 17 15 21 21 H 1.48504 * 109.46901 * 209.99943 * 19 17 15 22 22 H 1.48497 * 109.47277 * 329.99690 * 19 17 15 23 23 C 1.53006 * 109.47126 * 99.99789 * 8 7 6 24 24 C 1.52997 * 109.47127 * 179.97438 * 23 8 7 25 25 C 1.52992 * 109.47223 * 300.00324 * 23 8 7 26 26 C 1.38232 * 119.99785 * 0.27554 * 7 6 5 27 27 C 1.38229 * 119.99782 * 299.98047 * 4 2 1 28 28 H 1.09000 * 109.46948 * 300.00042 * 1 2 3 29 29 H 1.09000 * 109.47198 * 59.99683 * 1 2 3 30 30 H 1.08998 * 109.47710 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46949 * 240.00364 * 2 1 3 32 32 H 1.09003 * 109.47024 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47312 * 300.00247 * 3 2 1 34 34 H 1.09007 * 109.46881 * 60.00323 * 3 2 1 35 35 H 1.08005 * 120.00139 * 359.97438 * 5 4 2 36 36 H 1.08002 * 120.00149 * 179.97438 * 6 5 4 37 37 H 0.97005 * 120.00153 * 334.99657 * 10 8 7 38 38 H 1.08997 * 109.46862 * 299.99840 * 13 11 10 39 39 H 1.08993 * 109.46756 * 60.00116 * 13 11 10 40 40 H 1.09007 * 109.46779 * 300.00097 * 14 13 11 41 41 H 1.08995 * 109.47247 * 59.99569 * 14 13 11 42 42 H 0.97001 * 120.00148 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.46505 * 59.99690 * 23 8 7 44 44 H 1.09002 * 109.47153 * 180.02562 * 24 23 8 45 45 H 1.09001 * 109.46832 * 60.00321 * 24 23 8 46 46 H 1.09004 * 109.47261 * 300.00303 * 24 23 8 47 47 H 1.09001 * 109.47066 * 299.99881 * 25 23 8 48 48 H 1.08996 * 109.47747 * 59.99547 * 25 23 8 49 49 H 1.09002 * 109.47103 * 179.97438 * 25 23 8 50 50 H 1.08003 * 119.99967 * 179.72615 * 26 7 6 51 51 H 1.08002 * 120.00216 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.8270 -1.8344 1.1035 6 6 3.2874 -2.4863 2.2321 7 6 2.9538 -2.0139 3.4877 8 6 3.4562 -2.7243 4.7181 9 1 3.7452 -3.7424 4.4572 10 7 2.3955 -2.7614 5.7279 11 6 2.3932 -3.7274 6.6677 12 8 3.2690 -4.5663 6.6772 13 6 1.3023 -3.7651 7.7068 14 6 1.5335 -4.9506 8.6461 15 6 0.4423 -4.9887 9.6848 16 1 -0.3382 -4.2423 9.6756 17 6 0.4399 -5.9770 10.6462 18 7 -0.5126 -6.0106 11.5523 19 14 1.7888 -7.2692 10.6606 20 1 2.9170 -6.7977 11.5033 21 1 1.2529 -8.5380 11.2158 22 1 2.2688 -7.4993 9.2743 23 6 4.6684 -1.9779 5.2788 24 6 5.1781 -2.6988 6.5284 25 6 5.7761 -1.9392 4.2242 26 6 2.1552 -0.8927 3.6145 27 6 1.6987 -0.2380 2.4859 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8901 35 1 3.0876 -2.2036 0.1225 36 1 3.9079 -3.3647 2.1330 37 1 1.6949 -2.0906 5.7201 38 1 1.3156 -2.8389 8.2813 39 1 0.3358 -3.8739 7.2150 40 1 1.5206 -5.8770 8.0718 41 1 2.5001 -4.8414 9.1378 42 1 -0.5141 -6.7057 12.2289 43 1 4.3794 -0.9598 5.5396 44 1 6.0414 -2.1668 6.9281 45 1 5.4670 -3.7171 6.2679 46 1 4.3887 -2.7260 7.2796 47 1 6.0651 -2.9573 3.9634 48 1 5.4128 -1.4254 3.3343 49 1 6.6395 -1.4070 4.6236 50 1 1.8909 -0.5262 4.5955 51 1 1.0784 0.6405 2.5851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000462150152.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:33 Heat of formation + Delta-G solvation = -48.923398 kcal Electronic energy + Delta-G solvation = -26679.316779 eV Core-core repulsion = 23156.108676 eV Total energy + Delta-G solvation = -3523.208103 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.50912 -39.23405 -36.95356 -35.03295 -33.45725 -33.21311 -31.27515 -31.09673 -30.31072 -27.49897 -27.04229 -26.70235 -25.19622 -23.29735 -22.50289 -21.29227 -20.29281 -19.82776 -19.66229 -17.44418 -16.66725 -16.31775 -15.82991 -15.50889 -15.30423 -15.19910 -14.37764 -14.18427 -14.08024 -14.00658 -13.77452 -13.52648 -13.49507 -13.14456 -12.77172 -12.59851 -12.54266 -12.40515 -12.28883 -12.13283 -11.84023 -11.56675 -11.55649 -11.39576 -11.33511 -11.07783 -10.95538 -10.93125 -10.71472 -10.65183 -10.13517 -10.00112 -9.76735 -9.22480 -9.15519 -9.10940 -8.85026 -8.63894 -8.49182 -6.01582 -4.00120 1.09037 1.20064 3.15860 3.38839 3.40020 3.45509 3.56492 3.62506 4.29677 4.42344 4.52194 4.53092 4.75324 4.80299 4.83438 4.91581 4.99857 5.07602 5.19145 5.22829 5.26183 5.31031 5.34013 5.36339 5.46792 5.50772 5.60386 5.64113 5.66531 5.75005 5.78632 5.83470 5.87321 5.89304 5.95149 5.97901 6.09765 6.10907 6.13750 6.21766 6.28937 6.38316 6.40653 6.58606 6.71773 6.75587 6.77922 7.38573 7.45975 7.78640 7.83571 8.52122 8.70427 9.01798 9.61581 11.11306 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018370 B = 0.002691 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.866513 B =10401.635192 C =11348.676951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.057 4.057 3 C -0.144 4.144 4 C -0.080 4.080 5 C -0.116 4.116 6 C -0.104 4.104 7 C -0.085 4.085 8 C 0.188 3.812 9 H 0.093 0.907 10 N -0.736 5.736 11 C 0.512 3.488 12 O -0.534 6.534 13 C -0.123 4.123 14 C 0.003 3.997 15 C -0.524 4.524 16 H 0.072 0.928 17 C 0.068 3.932 18 N -0.904 5.904 19 Si 0.877 3.123 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.261 1.261 23 C -0.098 4.098 24 C -0.141 4.141 25 C -0.145 4.145 26 C -0.111 4.111 27 C -0.111 4.111 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.397 0.603 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.023 0.977 41 H 0.019 0.981 42 H 0.263 0.737 43 H 0.068 0.932 44 H 0.044 0.956 45 H 0.063 0.937 46 H 0.059 0.941 47 H 0.055 0.945 48 H 0.056 0.944 49 H 0.054 0.946 50 H 0.121 0.879 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.501 15.550 -25.001 30.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.075 4.075 3 C -0.201 4.201 4 C -0.080 4.080 5 C -0.134 4.134 6 C -0.123 4.123 7 C -0.085 4.085 8 C 0.083 3.917 9 H 0.111 0.889 10 N -0.390 5.390 11 C 0.300 3.700 12 O -0.410 6.410 13 C -0.163 4.163 14 C -0.035 4.035 15 C -0.562 4.562 16 H 0.090 0.910 17 C -0.133 4.133 18 N -0.543 5.543 19 Si 0.705 3.295 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.185 1.185 23 C -0.118 4.118 24 C -0.198 4.198 25 C -0.203 4.203 26 C -0.129 4.129 27 C -0.129 4.129 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.231 0.769 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.041 0.959 41 H 0.037 0.963 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.063 0.937 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.073 0.927 50 H 0.139 0.861 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.065 14.811 -24.817 30.005 hybrid contribution 0.255 -0.331 0.155 0.446 sum 8.320 14.480 -24.662 29.785 Atomic orbital electron populations 1.21863 0.94253 1.02154 1.01945 1.20128 0.96026 0.96010 0.95370 1.21859 1.01203 0.95129 1.01934 1.19850 0.97726 0.95756 0.94642 1.21011 0.98297 0.95642 0.98417 1.20984 0.99873 0.99781 0.91635 1.19934 0.98030 0.96084 0.94479 1.19839 0.87267 0.99581 0.84967 0.88893 1.46303 1.29066 1.32338 1.31252 1.21444 0.87150 0.79759 0.81617 1.90655 1.38316 1.38623 1.73399 1.21674 0.95927 1.03169 0.95534 1.19353 0.97336 0.92728 0.94072 1.21122 1.10192 1.13621 1.11281 0.90990 1.24975 0.95673 0.97543 0.95089 1.69911 1.33219 1.34481 1.16691 0.86794 0.82355 0.81145 0.79240 1.20270 1.21495 1.18507 1.21485 0.94556 0.99456 0.96262 1.21893 1.00556 1.00489 0.96851 1.21827 0.97997 1.01889 0.98543 1.20922 0.97922 0.95398 0.98672 1.20915 1.00210 0.99946 0.91795 0.92357 0.92443 0.92448 0.90592 0.92561 0.92441 0.92401 0.86173 0.85954 0.76853 0.89766 0.89723 0.95859 0.96283 0.92747 0.91338 0.93689 0.91774 0.92163 0.92586 0.92529 0.92666 0.86066 0.86131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.01 37.16 0.33 -0.57 16 2 C -0.06 -0.37 3.09 -91.77 -0.28 -0.66 16 3 C -0.14 -0.84 9.01 37.16 0.33 -0.51 16 4 C -0.08 -0.66 4.78 -104.63 -0.50 -1.16 16 5 C -0.12 -1.00 9.67 -39.59 -0.38 -1.39 16 6 C -0.10 -1.01 8.71 -39.59 -0.34 -1.35 16 7 C -0.08 -0.88 4.05 -104.62 -0.42 -1.31 16 8 C 0.19 2.31 2.05 -69.08 -0.14 2.17 16 9 H 0.09 1.32 7.44 -51.93 -0.39 0.93 16 10 N -0.74 -9.89 4.91 -54.93 -0.27 -10.16 16 11 C 0.51 9.09 6.18 -10.98 -0.07 9.03 16 12 O -0.53 -11.24 13.11 5.55 0.07 -11.17 16 13 C -0.12 -2.38 5.64 -27.88 -0.16 -2.54 16 14 C 0.00 0.07 3.33 -27.88 -0.09 -0.02 16 15 C -0.52 -15.07 9.66 -34.44 -0.33 -15.40 16 16 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 17 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 18 N -0.90 -28.18 13.96 55.43 0.77 -27.41 16 19 Si 0.88 22.73 27.47 -169.99 -4.67 18.06 16 20 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.26 -6.72 6.54 56.52 0.37 -6.35 16 23 C -0.10 -1.14 2.68 -90.62 -0.24 -1.38 16 24 C -0.14 -1.98 7.72 37.16 0.29 -1.70 16 25 C -0.14 -1.43 8.79 37.15 0.33 -1.10 16 26 C -0.11 -1.05 9.06 -39.59 -0.36 -1.41 16 27 C -0.11 -0.95 8.71 -39.59 -0.34 -1.30 16 28 H 0.06 0.37 7.39 -51.93 -0.38 -0.02 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.46 7.88 -51.93 -0.41 0.05 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.34 7.39 -51.93 -0.38 -0.05 16 35 H 0.12 0.84 7.95 -52.48 -0.42 0.42 16 36 H 0.12 1.08 8.04 -52.49 -0.42 0.66 16 37 H 0.40 4.39 6.86 -40.82 -0.28 4.11 16 38 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.02 0.61 7.15 -51.93 -0.37 0.24 16 41 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 42 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 1.00 7.53 -51.93 -0.39 0.61 16 46 H 0.06 0.98 5.78 -51.93 -0.30 0.68 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.53 6.64 -51.93 -0.34 0.18 16 49 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.12 1.01 6.90 -52.48 -0.36 0.65 16 51 H 0.12 0.86 7.10 -52.49 -0.37 0.49 16 LS Contribution 397.08 15.07 5.98 5.98 Total: -1.00 -32.99 397.08 -9.63 -42.61 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -9.03 Total: 0.74 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -2.49 Total: -18.66 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.50 Total: -37.56 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.07 Total: -11.17 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.67 Total: 18.06 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.99 -9.63 -42.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000462150152.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.309 kcal (2) G-P(sol) polarization free energy of solvation -32.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds