Wall clock time and date at job start Tue Mar 31 2020 12:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47183 * 2 1 4 4 C 1.50703 * 109.47270 * 120.00282 * 2 1 3 5 5 C 1.38232 * 119.99938 * 119.99804 * 4 2 1 6 6 C 1.38228 * 119.99891 * 180.02562 * 5 4 2 7 7 C 1.38237 * 120.00022 * 359.95466 * 6 5 4 8 8 C 1.50703 * 119.99976 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.46980 * 340.00020 * 8 7 6 10 10 N 1.46492 * 109.47096 * 220.00071 * 8 7 6 11 11 C 1.34779 * 120.00234 * 155.00123 * 10 8 7 12 12 O 1.21283 * 119.99840 * 359.97438 * 11 10 8 13 13 C 1.50701 * 120.00108 * 179.97438 * 11 10 8 14 14 C 1.53002 * 109.47061 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.47061 * 180.02562 * 14 13 11 16 16 H 1.07994 * 119.99747 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99913 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00123 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 119.99726 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47099 * 90.00452 * 19 17 15 21 21 H 1.48504 * 109.46901 * 209.99943 * 19 17 15 22 22 H 1.48497 * 109.47277 * 329.99690 * 19 17 15 23 23 C 1.53006 * 109.47126 * 99.99789 * 8 7 6 24 24 C 1.52997 * 109.47127 * 179.97438 * 23 8 7 25 25 C 1.52992 * 109.47223 * 300.00324 * 23 8 7 26 26 C 1.38232 * 119.99785 * 0.27554 * 7 6 5 27 27 C 1.38229 * 119.99782 * 299.98047 * 4 2 1 28 28 H 1.09000 * 109.46948 * 300.00042 * 1 2 3 29 29 H 1.09000 * 109.47198 * 59.99683 * 1 2 3 30 30 H 1.08998 * 109.47710 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46949 * 240.00364 * 2 1 3 32 32 H 1.09003 * 109.47024 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47312 * 300.00247 * 3 2 1 34 34 H 1.09007 * 109.46881 * 60.00323 * 3 2 1 35 35 H 1.08005 * 120.00139 * 359.97438 * 5 4 2 36 36 H 1.08002 * 120.00149 * 179.97438 * 6 5 4 37 37 H 0.97005 * 120.00153 * 334.99657 * 10 8 7 38 38 H 1.08997 * 109.46862 * 299.99840 * 13 11 10 39 39 H 1.08993 * 109.46756 * 60.00116 * 13 11 10 40 40 H 1.09007 * 109.46779 * 300.00097 * 14 13 11 41 41 H 1.08995 * 109.47247 * 59.99569 * 14 13 11 42 42 H 0.97001 * 120.00148 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.46505 * 59.99690 * 23 8 7 44 44 H 1.09002 * 109.47153 * 180.02562 * 24 23 8 45 45 H 1.09001 * 109.46832 * 60.00321 * 24 23 8 46 46 H 1.09004 * 109.47261 * 300.00303 * 24 23 8 47 47 H 1.09001 * 109.47066 * 299.99881 * 25 23 8 48 48 H 1.08996 * 109.47747 * 59.99547 * 25 23 8 49 49 H 1.09002 * 109.47103 * 179.97438 * 25 23 8 50 50 H 1.08003 * 119.99967 * 179.72615 * 26 7 6 51 51 H 1.08002 * 120.00216 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.8270 -1.8344 1.1035 6 6 3.2874 -2.4863 2.2321 7 6 2.9538 -2.0139 3.4877 8 6 3.4562 -2.7243 4.7181 9 1 3.7452 -3.7424 4.4572 10 7 2.3955 -2.7614 5.7279 11 6 2.3932 -3.7274 6.6677 12 8 3.2690 -4.5663 6.6772 13 6 1.3023 -3.7651 7.7068 14 6 1.5335 -4.9506 8.6461 15 6 0.4423 -4.9887 9.6848 16 1 -0.3382 -4.2423 9.6756 17 6 0.4399 -5.9770 10.6462 18 7 -0.5126 -6.0106 11.5523 19 14 1.7888 -7.2692 10.6606 20 1 2.9170 -6.7977 11.5033 21 1 1.2529 -8.5380 11.2158 22 1 2.2688 -7.4993 9.2743 23 6 4.6684 -1.9779 5.2788 24 6 5.1781 -2.6988 6.5284 25 6 5.7761 -1.9392 4.2242 26 6 2.1552 -0.8927 3.6145 27 6 1.6987 -0.2380 2.4859 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8901 35 1 3.0876 -2.2036 0.1225 36 1 3.9079 -3.3647 2.1330 37 1 1.6949 -2.0906 5.7201 38 1 1.3156 -2.8389 8.2813 39 1 0.3358 -3.8739 7.2150 40 1 1.5206 -5.8770 8.0718 41 1 2.5001 -4.8414 9.1378 42 1 -0.5141 -6.7057 12.2289 43 1 4.3794 -0.9598 5.5396 44 1 6.0414 -2.1668 6.9281 45 1 5.4670 -3.7171 6.2679 46 1 4.3887 -2.7260 7.2796 47 1 6.0651 -2.9573 3.9634 48 1 5.4128 -1.4254 3.3343 49 1 6.6395 -1.4070 4.6236 50 1 1.8909 -0.5262 4.5955 51 1 1.0784 0.6405 2.5851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000462150152.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:32 Heat of formation + Delta-G solvation = -66.590115 kcal Electronic energy + Delta-G solvation = -26680.082866 eV Core-core repulsion = 23156.108676 eV Total energy + Delta-G solvation = -3523.974190 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.49675 -40.27488 -37.94069 -35.77452 -35.47630 -34.43378 -33.20374 -31.81888 -31.15288 -28.45327 -27.94523 -27.82305 -26.49493 -23.99536 -23.46400 -22.88569 -21.21693 -20.92404 -20.71115 -19.24325 -17.97833 -17.45432 -16.88637 -16.81036 -16.26404 -16.11577 -15.93851 -15.34852 -15.09531 -14.89421 -14.75079 -14.62725 -14.43293 -14.17666 -14.08591 -13.77901 -13.66122 -13.39065 -13.23055 -13.06879 -12.93031 -12.86042 -12.75826 -12.36159 -12.17760 -12.08806 -11.97556 -11.95992 -11.86715 -11.74740 -11.72240 -11.49803 -11.42826 -11.39345 -10.78448 -10.68916 -10.01111 -9.79690 -9.41684 -8.31817 -6.34516 0.37661 0.51779 1.32634 1.34485 1.49712 1.74255 2.27024 2.34554 2.84708 3.03939 3.54970 3.79595 3.89069 3.92047 4.02423 4.04818 4.15595 4.22894 4.33873 4.36090 4.40321 4.49332 4.51771 4.56239 4.59904 4.69269 4.77412 4.80092 4.84133 4.96000 4.98734 5.00655 5.01458 5.03011 5.07717 5.16835 5.17856 5.22164 5.32650 5.35822 5.37137 5.41932 5.44974 5.45548 5.49160 5.55321 5.61509 5.75488 5.77806 6.10303 6.23558 6.60795 6.71936 7.30743 7.35673 8.83935 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018370 B = 0.002691 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.866513 B =10401.635192 C =11348.676951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.142 4.142 4 C -0.079 4.079 5 C -0.121 4.121 6 C -0.112 4.112 7 C -0.096 4.096 8 C 0.192 3.808 9 H 0.071 0.929 10 N -0.716 5.716 11 C 0.517 3.483 12 O -0.571 6.571 13 C -0.118 4.118 14 C 0.008 3.992 15 C -0.529 4.529 16 H 0.049 0.951 17 C 0.013 3.987 18 N -0.944 5.944 19 Si 0.939 3.061 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.261 1.261 23 C -0.092 4.092 24 C -0.137 4.137 25 C -0.138 4.138 26 C -0.116 4.116 27 C -0.114 4.114 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.137 0.863 36 H 0.125 0.875 37 H 0.410 0.590 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.009 0.991 41 H 0.009 0.991 42 H 0.267 0.733 43 H 0.079 0.921 44 H 0.058 0.942 45 H 0.042 0.958 46 H 0.035 0.965 47 H 0.051 0.949 48 H 0.065 0.935 49 H 0.064 0.936 50 H 0.131 0.869 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.185 17.007 -27.087 33.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 C -0.199 4.199 4 C -0.080 4.080 5 C -0.139 4.139 6 C -0.131 4.131 7 C -0.097 4.097 8 C 0.088 3.912 9 H 0.089 0.911 10 N -0.369 5.369 11 C 0.305 3.695 12 O -0.450 6.450 13 C -0.158 4.158 14 C -0.030 4.030 15 C -0.567 4.567 16 H 0.067 0.933 17 C -0.185 4.185 18 N -0.584 5.584 19 Si 0.763 3.237 20 H -0.194 1.194 21 H -0.204 1.204 22 H -0.186 1.186 23 C -0.112 4.112 24 C -0.194 4.194 25 C -0.196 4.196 26 C -0.134 4.134 27 C -0.132 4.132 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.154 0.846 36 H 0.143 0.857 37 H 0.248 0.752 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.027 0.973 41 H 0.028 0.972 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.070 0.930 48 H 0.084 0.916 49 H 0.083 0.917 50 H 0.149 0.851 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.735 16.313 -26.932 32.677 hybrid contribution -0.024 -0.699 0.742 1.020 sum 8.712 15.614 -26.190 31.711 Atomic orbital electron populations 1.21857 0.93990 1.01765 1.02525 1.20168 0.96168 0.96361 0.94750 1.21844 1.00968 0.94624 1.02498 1.20130 0.96985 0.95487 0.95351 1.21238 0.98124 0.95674 0.98842 1.21099 1.00136 1.00077 0.91757 1.19750 0.99413 0.96795 0.93692 1.19831 0.87091 0.98929 0.85361 0.91055 1.46070 1.29569 1.31173 1.30127 1.21020 0.86193 0.80226 0.82013 1.90649 1.39518 1.40369 1.74470 1.21500 0.97299 1.01488 0.95523 1.19188 0.95336 0.94539 0.93907 1.21439 1.10429 1.12742 1.12046 0.93284 1.25808 0.97894 0.99833 0.94932 1.70022 1.35083 1.35681 1.17661 0.85822 0.79732 0.78902 0.79214 1.19359 1.20404 1.18559 1.21443 0.94785 0.99311 0.95641 1.21828 1.00288 0.99861 0.97427 1.21763 0.97592 1.01982 0.98232 1.21062 0.97698 0.95121 0.99561 1.21123 1.00163 1.00329 0.91618 0.92394 0.91311 0.93300 0.89951 0.92902 0.91379 0.92394 0.84557 0.85704 0.75209 0.88204 0.88418 0.97268 0.97239 0.92393 0.90290 0.92335 0.93869 0.94636 0.92954 0.91638 0.91704 0.85131 0.84639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.01 71.98 0.65 -0.83 16 2 C -0.06 -0.60 3.09 -11.54 -0.04 -0.63 16 3 C -0.14 -1.30 9.01 71.98 0.65 -0.65 16 4 C -0.08 -1.14 4.78 -19.87 -0.09 -1.24 16 5 C -0.12 -1.85 9.67 22.27 0.22 -1.64 16 6 C -0.11 -2.01 8.71 22.27 0.19 -1.82 16 7 C -0.10 -1.85 4.05 -19.87 -0.08 -1.93 16 8 C 0.19 4.56 2.05 44.25 0.09 4.65 16 9 H 0.07 2.04 7.44 -2.39 -0.02 2.02 16 10 N -0.72 -18.56 4.91 -446.09 -2.19 -20.75 16 11 C 0.52 18.26 6.18 87.66 0.54 18.80 16 12 O -0.57 -24.36 13.11 -3.04 -0.04 -24.40 16 13 C -0.12 -4.53 5.64 29.85 0.17 -4.36 16 14 C 0.01 0.42 3.33 29.85 0.10 0.51 16 15 C -0.53 -30.82 9.66 25.60 0.25 -30.57 16 16 H 0.05 3.01 7.99 -2.91 -0.02 2.99 16 17 C 0.01 0.78 5.47 84.66 0.46 1.24 16 18 N -0.94 -59.61 13.96 21.45 0.30 -59.31 16 19 Si 0.94 47.28 27.47 68.60 1.88 49.17 16 20 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 22 H -0.26 -13.09 6.54 99.48 0.65 -12.44 16 23 C -0.09 -2.04 2.68 -10.79 -0.03 -2.06 16 24 C -0.14 -3.82 7.72 71.98 0.56 -3.27 16 25 C -0.14 -2.51 8.79 71.98 0.63 -1.88 16 26 C -0.12 -1.95 9.06 22.27 0.20 -1.75 16 27 C -0.11 -1.70 8.71 22.27 0.19 -1.50 16 28 H 0.06 0.60 7.39 -2.39 -0.02 0.58 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.08 0.78 7.88 -2.38 -0.02 0.77 16 32 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.07 0.48 8.14 -2.39 -0.02 0.47 16 34 H 0.06 0.53 7.39 -2.38 -0.02 0.51 16 35 H 0.14 1.58 7.95 -2.91 -0.02 1.56 16 36 H 0.12 2.10 8.04 -2.91 -0.02 2.07 16 37 H 0.41 8.38 6.86 -92.70 -0.64 7.74 16 38 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 39 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 40 H 0.01 0.47 7.15 -2.38 -0.02 0.46 16 41 H 0.01 0.48 7.53 -2.39 -0.02 0.46 16 42 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 43 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 45 H 0.04 1.37 7.53 -2.39 -0.02 1.35 16 46 H 0.03 1.15 5.78 -2.38 -0.01 1.14 16 47 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.06 1.09 6.64 -2.39 -0.02 1.07 16 49 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.13 1.86 6.90 -2.91 -0.02 1.84 16 51 H 0.14 1.57 7.10 -2.91 -0.02 1.55 16 Total: -1.00 -71.52 397.08 4.81 -66.71 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.20 Total: 17.51 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 4.66 Total: -28.93 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -1.89 Total: -80.06 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.04 Total: -24.40 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 1.88 Total: 49.17 kcal Total: -71.52 4.81 -66.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000462150152.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.124 kcal (2) G-P(sol) polarization free energy of solvation -71.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds