Wall clock time and date at job start Tue Mar 31 2020 12:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.46870 * 2 1 4 4 C 1.50694 * 109.47350 * 120.00272 * 2 1 3 5 5 C 1.38236 * 120.00240 * 120.00182 * 4 2 1 6 6 C 1.38233 * 120.00247 * 180.02562 * 5 4 2 7 7 C 1.38237 * 119.99779 * 359.94994 * 6 5 4 8 8 C 1.50707 * 120.00013 * 180.02562 * 7 6 5 9 9 H 1.08997 * 109.46681 * 20.00224 * 8 7 6 10 10 N 1.46496 * 109.46851 * 140.00279 * 8 7 6 11 11 C 1.34774 * 119.99544 * 205.00060 * 10 8 7 12 12 O 1.21279 * 120.00472 * 0.02562 * 11 10 8 13 13 C 1.50706 * 120.00020 * 180.02562 * 11 10 8 14 14 C 1.52997 * 109.47238 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47055 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00290 * 0.02562 * 15 14 13 17 17 C 1.37887 * 120.00079 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99907 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99654 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47022 * 89.99986 * 19 17 15 21 21 H 1.48502 * 109.46769 * 209.99494 * 19 17 15 22 22 H 1.48495 * 109.47280 * 329.99669 * 19 17 15 23 23 C 1.52995 * 109.47004 * 260.00464 * 8 7 6 24 24 C 1.53006 * 109.47624 * 59.99637 * 23 8 7 25 25 C 1.52999 * 109.47105 * 179.97438 * 23 8 7 26 26 C 1.38236 * 120.00248 * 0.28042 * 7 6 5 27 27 C 1.38237 * 119.99761 * 300.02375 * 4 2 1 28 28 H 1.08997 * 109.47407 * 299.99623 * 1 2 3 29 29 H 1.09004 * 109.47507 * 59.99867 * 1 2 3 30 30 H 1.09006 * 109.46915 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47113 * 240.00235 * 2 1 3 32 32 H 1.08999 * 109.47383 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47686 * 300.00060 * 3 2 1 34 34 H 1.09005 * 109.47061 * 60.00204 * 3 2 1 35 35 H 1.07998 * 119.99732 * 359.97438 * 5 4 2 36 36 H 1.07997 * 120.00328 * 179.97438 * 6 5 4 37 37 H 0.96994 * 120.00700 * 25.00179 * 10 8 7 38 38 H 1.09001 * 109.46953 * 299.99667 * 13 11 10 39 39 H 1.09000 * 109.47318 * 59.99264 * 13 11 10 40 40 H 1.09001 * 109.46832 * 299.99686 * 14 13 11 41 41 H 1.09004 * 109.47261 * 59.99705 * 14 13 11 42 42 H 0.96999 * 119.99682 * 180.02562 * 18 17 15 43 43 H 1.09007 * 109.47250 * 299.99628 * 23 8 7 44 44 H 1.09003 * 109.46319 * 59.99717 * 24 23 8 45 45 H 1.08990 * 109.47376 * 179.97438 * 24 23 8 46 46 H 1.08994 * 109.46884 * 300.00504 * 24 23 8 47 47 H 1.09002 * 109.47159 * 59.99833 * 25 23 8 48 48 H 1.09003 * 109.47295 * 179.97438 * 25 23 8 49 49 H 1.08997 * 109.46706 * 299.99837 * 25 23 8 50 50 H 1.08001 * 120.00296 * 179.72480 * 26 7 6 51 51 H 1.07993 * 120.00342 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8271 -1.8343 1.1035 6 6 3.2875 -2.4863 2.2321 7 6 2.9540 -2.0138 3.4877 8 6 3.4564 -2.7242 4.7182 9 1 4.3194 -3.3366 4.4571 10 7 3.8457 -1.7364 5.7275 11 6 4.7574 -2.0566 6.6671 12 8 5.2558 -3.1621 6.6767 13 6 5.1575 -1.0407 7.7058 14 6 6.1990 -1.6537 8.6441 15 6 6.5996 -0.6376 9.6824 16 1 6.1554 0.3468 9.6742 17 6 7.5324 -0.9650 10.6436 18 7 7.8816 -0.0784 11.5500 19 14 8.3001 -2.6679 10.6582 20 1 9.5278 -2.6645 9.8228 21 1 8.6510 -3.0407 12.0522 22 1 7.3319 -3.6521 10.1113 23 6 2.3483 -3.6175 5.2794 24 6 1.9415 -4.6491 4.2252 25 6 2.8585 -4.3392 6.5283 26 6 2.1553 -0.8927 3.6146 27 6 1.6980 -0.2385 2.4859 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.0877 -2.2035 0.1226 36 1 3.9081 -3.3646 2.1330 37 1 3.4474 -0.8521 5.7197 38 1 5.5826 -0.1659 7.2137 39 1 4.2802 -0.7437 8.2805 40 1 5.7743 -2.5286 9.1363 41 1 7.0763 -1.9503 8.0691 42 1 8.5381 -0.3087 12.2259 43 1 1.4851 -3.0051 5.5405 44 1 2.8047 -5.2614 3.9642 45 1 1.1525 -5.2857 4.6252 46 1 1.5783 -4.1352 3.3353 47 1 3.1485 -3.6046 7.2795 48 1 2.0689 -4.9753 6.9284 49 1 3.7214 -4.9516 6.2668 50 1 1.8910 -0.5261 4.5955 51 1 1.0771 0.6396 2.5851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000462150153.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:35 Heat of formation + Delta-G solvation = -66.668750 kcal Electronic energy + Delta-G solvation = -26680.084942 eV Core-core repulsion = 23156.107342 eV Total energy + Delta-G solvation = -3523.977600 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.49609 -40.27461 -37.94151 -35.77402 -35.47575 -34.43356 -33.20309 -31.81832 -31.15266 -28.45306 -27.94512 -27.82212 -26.49470 -23.99320 -23.46360 -22.88750 -21.21787 -20.92389 -20.71107 -19.24311 -17.97691 -17.45247 -16.89525 -16.80556 -16.26744 -16.10748 -15.93972 -15.35168 -15.09256 -14.89719 -14.75051 -14.62531 -14.43263 -14.17827 -14.07380 -13.79402 -13.65996 -13.39273 -13.22793 -13.06580 -12.93523 -12.86077 -12.75232 -12.36303 -12.17762 -12.09176 -11.98444 -11.95972 -11.85070 -11.74942 -11.72802 -11.49918 -11.42832 -11.39168 -10.78431 -10.68914 -10.01131 -9.79600 -9.41597 -8.31866 -6.34512 0.37688 0.51816 1.32648 1.34436 1.49686 1.74307 2.27106 2.34546 2.84767 3.03885 3.54930 3.79641 3.89129 3.92085 4.02378 4.04943 4.15596 4.22947 4.33769 4.36088 4.40317 4.49340 4.51818 4.56296 4.59934 4.69180 4.77285 4.79967 4.84145 4.95822 4.98754 5.00661 5.01508 5.03023 5.07765 5.16775 5.17904 5.22213 5.32649 5.35744 5.37139 5.41932 5.44592 5.45834 5.49221 5.55309 5.61515 5.75490 5.77852 6.10365 6.23538 6.60890 6.71933 7.30689 7.35727 8.83893 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018367 B = 0.002691 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.141236 B =10402.140025 C =11348.987671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.056 4.056 3 C -0.144 4.144 4 C -0.079 4.079 5 C -0.121 4.121 6 C -0.112 4.112 7 C -0.096 4.096 8 C 0.192 3.808 9 H 0.071 0.929 10 N -0.716 5.716 11 C 0.517 3.483 12 O -0.571 6.571 13 C -0.118 4.118 14 C 0.008 3.992 15 C -0.529 4.529 16 H 0.049 0.951 17 C 0.013 3.987 18 N -0.944 5.944 19 Si 0.939 3.061 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.261 1.261 23 C -0.092 4.092 24 C -0.138 4.138 25 C -0.137 4.137 26 C -0.116 4.116 27 C -0.115 4.115 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.137 0.863 36 H 0.125 0.875 37 H 0.410 0.590 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.010 0.990 41 H 0.008 0.992 42 H 0.267 0.733 43 H 0.079 0.921 44 H 0.051 0.949 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.034 0.966 48 H 0.058 0.942 49 H 0.042 0.958 50 H 0.131 0.869 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.779 -2.050 -27.089 33.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.074 4.074 3 C -0.201 4.201 4 C -0.080 4.080 5 C -0.139 4.139 6 C -0.131 4.131 7 C -0.097 4.097 8 C 0.088 3.912 9 H 0.090 0.910 10 N -0.369 5.369 11 C 0.305 3.695 12 O -0.450 6.450 13 C -0.158 4.158 14 C -0.030 4.030 15 C -0.567 4.567 16 H 0.067 0.933 17 C -0.185 4.185 18 N -0.584 5.584 19 Si 0.763 3.237 20 H -0.195 1.195 21 H -0.204 1.204 22 H -0.185 1.185 23 C -0.112 4.112 24 C -0.196 4.196 25 C -0.194 4.194 26 C -0.134 4.134 27 C -0.132 4.132 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.154 0.846 36 H 0.143 0.857 37 H 0.248 0.752 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.029 0.971 41 H 0.026 0.974 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.070 0.930 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.053 0.947 48 H 0.077 0.923 49 H 0.061 0.939 50 H 0.149 0.851 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -18.313 -2.803 -26.931 32.688 hybrid contribution 0.693 -0.199 0.723 1.021 sum -17.620 -3.003 -26.208 31.723 Atomic orbital electron populations 1.21843 0.93649 1.01943 1.02498 1.20166 0.96437 0.96092 0.94753 1.21857 1.00812 0.94945 1.02524 1.20130 0.97017 0.95456 0.95348 1.21238 0.98104 0.95693 0.98842 1.21099 0.99956 1.00253 0.91755 1.19751 0.99350 0.96861 0.93688 1.19829 0.96875 0.89136 0.85366 0.91040 1.46066 1.43343 1.17368 1.30150 1.21018 0.77944 0.88487 0.82001 1.90648 1.55531 1.24385 1.74441 1.21502 1.01056 0.97721 0.95534 1.19186 0.94574 0.95344 0.93864 1.21442 1.23299 0.99793 1.12121 0.93287 1.25812 0.96966 1.00762 0.94939 1.70025 1.34046 1.36617 1.17758 0.85820 0.79416 0.80929 0.77494 1.19452 1.20377 1.18493 1.21448 0.97295 0.96809 0.95634 1.21766 1.01401 0.98168 0.98234 1.21826 1.00184 0.99945 0.97439 1.21065 0.97577 0.95228 0.99558 1.21126 1.00254 1.00239 0.91620 0.92388 0.91387 0.92902 0.89952 0.93300 0.91314 0.92393 0.84560 0.85698 0.75211 0.88403 0.88225 0.97117 0.97386 0.92395 0.90278 0.92958 0.91708 0.91625 0.94670 0.92343 0.93879 0.85130 0.84643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.01 71.98 0.65 -0.65 16 2 C -0.06 -0.60 3.09 -11.54 -0.04 -0.63 16 3 C -0.14 -1.48 9.01 71.98 0.65 -0.83 16 4 C -0.08 -1.14 4.78 -19.87 -0.09 -1.24 16 5 C -0.12 -1.85 9.67 22.27 0.22 -1.64 16 6 C -0.11 -2.01 8.71 22.27 0.19 -1.81 16 7 C -0.10 -1.85 4.05 -19.86 -0.08 -1.93 16 8 C 0.19 4.56 2.04 44.25 0.09 4.65 16 9 H 0.07 2.04 7.44 -2.39 -0.02 2.02 16 10 N -0.72 -18.56 4.92 -446.10 -2.19 -20.75 16 11 C 0.52 18.26 6.18 87.66 0.54 18.80 16 12 O -0.57 -24.36 13.11 -3.02 -0.04 -24.40 16 13 C -0.12 -4.53 5.64 29.85 0.17 -4.36 16 14 C 0.01 0.42 3.33 29.85 0.10 0.52 16 15 C -0.53 -30.82 9.66 25.60 0.25 -30.57 16 16 H 0.05 3.01 7.99 -2.91 -0.02 2.98 16 17 C 0.01 0.77 5.47 84.66 0.46 1.23 16 18 N -0.94 -59.62 13.96 21.45 0.30 -59.32 16 19 Si 0.94 47.29 27.47 68.60 1.88 49.18 16 20 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 21 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.26 -13.03 6.54 99.48 0.65 -12.38 16 23 C -0.09 -2.04 2.68 -10.79 -0.03 -2.07 16 24 C -0.14 -2.51 8.79 71.98 0.63 -1.88 16 25 C -0.14 -3.84 7.72 71.98 0.56 -3.28 16 26 C -0.12 -1.94 9.05 22.27 0.20 -1.74 16 27 C -0.11 -1.70 8.71 22.27 0.19 -1.50 16 28 H 0.06 0.53 7.39 -2.39 -0.02 0.51 16 29 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.08 0.78 7.88 -2.38 -0.02 0.76 16 32 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.06 0.60 7.39 -2.38 -0.02 0.58 16 35 H 0.14 1.58 7.95 -2.91 -0.02 1.56 16 36 H 0.13 2.09 8.04 -2.91 -0.02 2.07 16 37 H 0.41 8.38 6.88 -92.71 -0.64 7.74 16 38 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 39 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 40 H 0.01 0.55 7.16 -2.39 -0.02 0.53 16 41 H 0.01 0.41 7.53 -2.38 -0.02 0.39 16 42 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 43 H 0.08 1.60 8.14 -2.38 -0.02 1.59 16 44 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.06 1.09 6.64 -2.39 -0.02 1.07 16 47 H 0.03 1.15 5.78 -2.39 -0.01 1.13 16 48 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.04 1.37 7.53 -2.39 -0.02 1.35 16 50 H 0.13 1.86 6.93 -2.91 -0.02 1.84 16 51 H 0.14 1.56 7.10 -2.91 -0.02 1.54 16 Total: -1.00 -71.53 397.13 4.81 -66.72 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.20 Total: 17.50 kcal Atomic # 6 Polarization: -33.60 SS G_CDS: 4.66 Total: -28.94 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -1.89 Total: -80.07 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.04 Total: -24.40 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 1.88 Total: 49.18 kcal Total: -71.53 4.81 -66.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000462150153.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.052 kcal (2) G-P(sol) polarization free energy of solvation -71.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds