Wall clock time and date at job start Tue Mar 31 2020 12:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46976 * 2 1 4 4 C 1.50705 * 109.47088 * 240.00357 * 2 1 3 5 5 C 1.38355 * 119.85384 * 59.72462 * 4 2 1 6 6 C 1.37957 * 120.14285 * 179.72482 * 5 4 2 7 7 C 1.39580 * 119.85387 * 0.54662 * 6 5 4 8 8 C 1.47841 * 120.14635 * 179.70572 * 7 6 5 9 9 O 1.21557 * 120.00023 * 150.65006 * 8 7 6 10 10 N 1.34776 * 120.00049 * 330.64753 * 8 7 6 11 11 C 1.46498 * 120.00116 * 6.17077 * 10 8 7 12 12 C 1.50705 * 109.47069 * 98.84474 * 11 10 8 13 13 H 1.08002 * 119.99655 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00285 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99728 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00264 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47004 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46879 * 119.99580 * 16 14 12 19 19 H 1.48493 * 109.47231 * 239.99946 * 16 14 12 20 20 C 1.46498 * 120.00106 * 186.17292 * 10 8 7 21 21 C 1.53005 * 109.47098 * 89.10738 * 20 10 8 22 22 C 1.52998 * 109.47425 * 64.46878 * 21 20 10 23 23 C 1.53001 * 109.46934 * 184.47402 * 21 20 10 24 24 C 1.53002 * 109.46714 * 304.46556 * 21 20 10 25 25 C 1.39579 * 119.70593 * 359.72747 * 7 6 5 26 26 C 1.37951 * 119.85609 * 0.02562 * 25 7 6 27 27 H 1.09009 * 109.46612 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47387 * 299.99877 * 1 2 3 29 29 H 1.09000 * 109.47162 * 59.99860 * 1 2 3 30 30 H 1.09000 * 109.47162 * 120.00140 * 2 1 3 31 31 H 1.08994 * 109.46934 * 300.00284 * 3 2 1 32 32 H 1.08996 * 109.46962 * 59.99863 * 3 2 1 33 33 H 1.08996 * 109.46865 * 179.97438 * 3 2 1 34 34 H 1.08005 * 119.92913 * 0.02562 * 5 4 2 35 35 H 1.07996 * 120.07365 * 180.25001 * 6 5 4 36 36 H 1.08998 * 109.47644 * 218.84741 * 11 10 8 37 37 H 1.09001 * 109.47042 * 338.84795 * 11 10 8 38 38 H 0.97000 * 119.99685 * 180.02562 * 15 14 12 39 39 H 1.09004 * 109.47421 * 209.10166 * 20 10 8 40 40 H 1.09003 * 109.47340 * 329.10474 * 20 10 8 41 41 H 1.08997 * 109.46968 * 59.99896 * 22 21 20 42 42 H 1.08993 * 109.46716 * 180.02562 * 22 21 20 43 43 H 1.09004 * 109.46969 * 300.00456 * 22 21 20 44 44 H 1.08994 * 109.47743 * 59.99543 * 23 21 20 45 45 H 1.09004 * 109.46715 * 179.97438 * 23 21 20 46 46 H 1.09004 * 109.46979 * 299.99367 * 23 21 20 47 47 H 1.09000 * 109.46891 * 65.19249 * 24 21 20 48 48 H 1.08999 * 109.46944 * 185.18779 * 24 21 20 49 49 H 1.08993 * 109.47337 * 305.19158 * 24 21 20 50 50 H 1.08003 * 120.06690 * 179.97438 * 25 7 6 51 51 H 1.08003 * 119.92643 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 1.6916 -0.2383 -2.4856 6 6 2.1528 -0.8806 -3.6161 7 6 2.9555 -2.0157 -3.4916 8 6 3.4479 -2.7129 -4.6988 9 8 4.5044 -3.3132 -4.6655 10 7 2.7255 -2.6829 -5.8361 11 6 1.5228 -1.8503 -5.9183 12 6 1.8542 -0.5565 -6.6165 13 1 2.8602 -0.3727 -6.9638 14 6 0.8735 0.3929 -6.8109 15 7 -0.3514 0.1692 -6.3874 16 14 1.2842 1.9962 -7.6769 17 1 2.7205 2.0015 -8.0539 18 1 0.4516 2.1256 -8.8998 19 1 1.0067 3.1359 -6.7663 20 6 3.1427 -3.4828 -6.9903 21 6 2.5089 -4.8727 -6.9035 22 6 0.9879 -4.7474 -7.0121 23 6 3.0319 -5.7440 -8.0473 24 6 2.8734 -5.5166 -5.5643 25 6 3.2908 -2.4899 -2.2224 26 6 2.8272 -1.8353 -1.1001 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.0671 0.6378 -2.5806 35 1 1.8894 -0.5088 -4.5952 36 1 0.7524 -2.3791 -6.4795 37 1 1.1587 -1.6378 -4.9131 38 1 -1.0414 0.8369 -6.5245 39 1 2.8189 -2.9926 -7.9084 40 1 4.2286 -3.5781 -6.9929 41 1 0.7284 -4.2886 -7.9661 42 1 0.5365 -5.7375 -6.9498 43 1 0.6154 -4.1266 -6.1972 44 1 4.1154 -5.8333 -7.9700 45 1 2.5807 -6.7343 -7.9851 46 1 2.7723 -5.2853 -9.0014 47 1 2.4226 -4.9460 -4.7522 48 1 2.5001 -6.5404 -5.5398 49 1 3.9569 -5.5220 -5.4466 50 1 3.9112 -3.3680 -2.1193 51 1 3.0857 -2.2015 -0.1175 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000477775737.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:48 Heat of formation + Delta-G solvation = -26.060195 kcal Electronic energy + Delta-G solvation = -28255.907549 eV Core-core repulsion = 24733.690868 eV Total energy + Delta-G solvation = -3522.216680 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.60983 -39.93200 -38.08315 -36.67776 -35.76252 -34.30399 -31.91333 -30.95778 -29.56792 -28.17732 -28.11470 -27.94896 -27.32961 -25.15974 -24.25206 -23.41901 -21.27000 -20.64022 -19.62123 -18.66889 -18.05835 -17.55215 -16.70557 -16.54088 -16.33650 -15.95211 -15.57703 -15.07153 -15.02227 -14.82792 -14.62092 -14.44261 -14.33986 -14.26589 -14.10432 -13.68619 -13.34689 -13.23406 -13.09537 -12.95035 -12.86317 -12.80007 -12.60761 -12.48387 -12.46043 -12.14783 -12.04666 -11.99000 -11.87956 -11.71515 -11.63134 -11.54619 -11.48871 -11.19429 -10.74822 -10.48681 -9.73684 -9.52990 -9.30949 -8.22356 -6.37263 0.06819 0.55998 1.37434 1.42164 1.51530 1.95055 2.30132 2.44420 2.95352 3.06317 3.68010 3.80894 3.89358 3.92730 3.98949 4.06166 4.19267 4.28093 4.35424 4.54022 4.57403 4.57492 4.60417 4.71244 4.74574 4.80969 4.84249 4.89142 4.91353 4.94963 4.98784 5.02605 5.04135 5.06189 5.10134 5.17287 5.20117 5.23542 5.24459 5.34394 5.37781 5.41922 5.47506 5.52428 5.58246 5.62689 5.67075 5.78518 5.88774 6.02994 6.13288 6.57921 6.81354 7.28061 7.40441 8.80883 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009317 B = 0.005722 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3004.410004 B = 4892.156754 C = 6992.133919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.054 4.054 3 C -0.144 4.144 4 C -0.053 4.053 5 C -0.136 4.136 6 C -0.115 4.115 7 C -0.164 4.164 8 C 0.553 3.447 9 O -0.590 6.590 10 N -0.584 5.584 11 C 0.216 3.784 12 C -0.548 4.548 13 H 0.048 0.952 14 C 0.035 3.965 15 N -0.903 5.903 16 Si 0.947 3.053 17 H -0.276 1.276 18 H -0.276 1.276 19 H -0.275 1.275 20 C 0.127 3.873 21 C -0.080 4.080 22 C -0.135 4.135 23 C -0.129 4.129 24 C -0.123 4.123 25 C -0.073 4.073 26 C -0.135 4.135 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.098 0.902 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.121 0.879 35 H 0.174 0.826 36 H 0.029 0.971 37 H 0.062 0.938 38 H 0.270 0.730 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.038 0.962 44 H 0.056 0.944 45 H 0.072 0.928 46 H 0.061 0.939 47 H 0.025 0.975 48 H 0.066 0.934 49 H 0.048 0.952 50 H 0.128 0.872 51 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.791 -4.055 8.799 9.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.072 4.072 3 C -0.201 4.201 4 C -0.053 4.053 5 C -0.154 4.154 6 C -0.132 4.132 7 C -0.167 4.167 8 C 0.344 3.656 9 O -0.474 6.474 10 N -0.312 5.312 11 C 0.096 3.904 12 C -0.586 4.586 13 H 0.066 0.934 14 C -0.167 4.167 15 N -0.541 5.541 16 Si 0.773 3.227 17 H -0.201 1.201 18 H -0.202 1.202 19 H -0.200 1.200 20 C 0.004 3.996 21 C -0.081 4.081 22 C -0.192 4.192 23 C -0.187 4.187 24 C -0.180 4.180 25 C -0.092 4.092 26 C -0.153 4.153 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.117 0.883 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.139 0.861 35 H 0.191 0.809 36 H 0.047 0.953 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.058 0.942 44 H 0.075 0.925 45 H 0.091 0.909 46 H 0.080 0.920 47 H 0.045 0.955 48 H 0.085 0.915 49 H 0.067 0.933 50 H 0.146 0.854 51 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.115 -4.281 8.775 9.827 hybrid contribution 0.025 1.046 -0.952 1.415 sum 1.140 -3.235 7.823 8.542 Atomic orbital electron populations 1.21859 0.93876 1.01995 1.02357 1.20236 0.96295 0.96283 0.94392 1.21857 1.01073 0.94754 1.02405 1.20399 0.95148 0.94707 0.95045 1.21056 1.01624 1.00739 0.92004 1.23182 0.92764 0.93913 1.03336 1.20014 1.03593 0.99170 0.93943 1.18554 0.83520 0.79650 0.83916 1.90609 1.23680 1.47701 1.85422 1.47966 1.27410 1.43871 1.11917 1.20200 0.82451 0.88603 0.99134 1.21554 0.95923 1.02334 1.38790 0.93409 1.25516 0.94587 1.01025 0.95621 1.70008 1.01985 1.36225 1.45893 0.85669 0.78215 0.80095 0.78757 1.20058 1.20178 1.19993 1.21503 0.98937 0.90907 0.88280 1.20928 0.95973 0.94419 0.96783 1.21892 0.94522 1.01496 1.01299 1.21737 1.00973 0.99327 0.96660 1.21728 1.00804 0.99755 0.95719 1.21256 0.97497 0.99444 0.90980 1.21198 0.99324 0.95971 0.98789 0.92889 0.90288 0.93627 0.88349 0.93529 0.90308 0.92779 0.86105 0.80921 0.95304 0.92094 0.92042 0.90981 0.91833 0.92931 0.91381 0.94246 0.92506 0.90916 0.91989 0.95549 0.91481 0.93307 0.85435 0.82650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.00 71.98 0.65 -2.37 16 2 C -0.05 -1.16 3.09 -11.54 -0.04 -1.20 16 3 C -0.14 -2.93 9.01 71.98 0.65 -2.28 16 4 C -0.05 -1.55 4.79 -19.81 -0.09 -1.65 16 5 C -0.14 -4.94 8.69 22.23 0.19 -4.75 16 6 C -0.11 -4.91 7.50 22.53 0.17 -4.75 16 7 C -0.16 -6.93 5.59 -20.09 -0.11 -7.04 16 8 C 0.55 25.02 5.68 86.79 0.49 25.51 16 9 O -0.59 -28.00 14.64 -3.90 -0.06 -28.06 16 10 N -0.58 -25.77 2.01 -829.55 -1.66 -27.44 16 11 C 0.22 10.38 3.95 85.63 0.34 10.72 16 12 C -0.55 -28.23 7.53 25.60 0.19 -28.04 16 13 H 0.05 2.57 7.81 -2.91 -0.02 2.55 16 14 C 0.04 1.78 5.34 84.65 0.45 2.23 16 15 N -0.90 -47.45 13.29 21.45 0.28 -47.17 16 16 Si 0.95 41.08 29.54 68.60 2.03 43.11 16 17 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 20 C 0.13 4.93 4.59 86.38 0.40 5.33 16 21 C -0.08 -2.58 0.85 -52.18 -0.04 -2.62 16 22 C -0.13 -4.39 7.51 71.98 0.54 -3.85 16 23 C -0.13 -3.27 8.47 71.98 0.61 -2.66 16 24 C -0.12 -4.07 7.12 71.98 0.51 -3.56 16 25 C -0.07 -2.58 9.60 22.53 0.22 -2.36 16 26 C -0.14 -3.90 9.65 22.23 0.21 -3.69 16 27 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.04 1.10 7.36 -2.39 -0.02 1.08 16 30 H 0.10 1.70 7.87 -2.39 -0.02 1.68 16 31 H 0.05 1.07 7.39 -2.39 -0.02 1.06 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.12 4.27 7.08 -2.91 -0.02 4.25 16 35 H 0.17 8.45 3.04 -2.91 -0.01 8.44 16 36 H 0.03 1.45 5.74 -2.39 -0.01 1.44 16 37 H 0.06 3.07 3.98 -2.72 -0.01 3.06 16 38 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 39 H 0.07 2.84 8.07 -2.38 -0.02 2.83 16 40 H 0.06 2.55 7.37 -2.39 -0.02 2.53 16 41 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.04 1.49 5.80 -2.39 -0.01 1.47 16 44 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 46 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.03 0.98 6.63 -2.39 -0.02 0.96 16 48 H 0.07 1.85 8.14 -2.39 -0.02 1.84 16 49 H 0.05 1.74 7.24 -2.39 -0.02 1.72 16 50 H 0.13 4.29 7.92 -2.91 -0.02 4.27 16 51 H 0.16 3.28 7.94 -2.91 -0.02 3.26 16 Total: -1.00 -58.97 389.71 6.82 -52.15 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: 0.90 Total: 34.42 kcal Atomic # 6 Polarization: -32.35 SS G_CDS: 5.34 Total: -27.01 kcal Atomic # 7 Polarization: -73.23 SS G_CDS: -1.38 Total: -74.60 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.06 Total: -28.06 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -58.97 6.82 -52.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000477775737.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.087 kcal (2) G-P(sol) polarization free energy of solvation -58.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds