Wall clock time and date at job start Tue Mar 31 2020 11:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38169 * 120.02514 * 2 1 4 4 C 1.38246 * 120.05428 * 179.74267 * 3 2 1 5 5 C 1.38289 * 120.10934 * 0.27655 * 4 3 2 6 6 C 1.38116 * 120.06114 * 359.95509 * 5 4 3 7 7 C 1.38709 * 120.03005 * 180.22631 * 2 1 3 8 8 O 1.35896 * 120.05573 * 359.97438 * 7 2 1 9 9 C 1.42902 * 117.00048 * 174.82074 * 8 7 2 10 10 H 1.09004 * 109.46717 * 324.94813 * 9 8 7 11 11 C 1.52998 * 109.47060 * 84.95013 * 9 8 7 12 12 C 1.52995 * 109.47174 * 60.00075 * 11 9 8 13 13 C 1.53003 * 109.47175 * 59.99813 * 12 11 9 14 14 C 1.52998 * 109.47222 * 300.00158 * 13 12 11 15 15 C 1.52995 * 109.47174 * 59.99841 * 14 13 12 16 16 H 1.09002 * 109.47113 * 60.00073 * 15 14 13 17 17 N 1.46894 * 109.47403 * 180.02562 * 15 14 13 18 18 C 1.46904 * 110.99990 * 275.00406 * 17 15 14 19 19 C 1.53000 * 109.46905 * 179.97438 * 18 17 15 20 20 C 1.52999 * 109.46933 * 179.97438 * 19 18 17 21 21 C 1.50697 * 109.47415 * 179.97438 * 20 19 18 22 22 H 1.08003 * 119.99924 * 359.97438 * 21 20 19 23 23 C 1.37883 * 120.00547 * 179.97438 * 21 20 19 24 24 N 1.31510 * 119.99311 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00345 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46994 * 59.99892 * 25 23 21 27 27 H 1.48496 * 109.47262 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.46907 * 300.00114 * 25 23 21 29 29 H 1.08996 * 109.47445 * 89.99940 * 1 2 3 30 30 H 1.09003 * 109.47037 * 210.00283 * 1 2 3 31 31 H 1.08999 * 109.47466 * 329.99921 * 1 2 3 32 32 H 1.07995 * 119.97448 * 0.02562 * 3 2 1 33 33 H 1.07993 * 119.94342 * 180.25231 * 4 3 2 34 34 H 1.08004 * 119.96678 * 179.97438 * 5 4 3 35 35 H 1.07997 * 120.03223 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.47041 * 180.02562 * 11 9 8 37 37 H 1.08998 * 109.47152 * 299.99871 * 11 9 8 38 38 H 1.09002 * 109.47113 * 299.99927 * 12 11 9 39 39 H 1.09004 * 109.47334 * 179.97438 * 12 11 9 40 40 H 1.09004 * 109.47179 * 179.97438 * 13 12 11 41 41 H 1.09002 * 109.47006 * 60.00049 * 13 12 11 42 42 H 1.09002 * 109.47041 * 299.99870 * 14 13 12 43 43 H 1.08998 * 109.47152 * 180.02562 * 14 13 12 44 44 H 1.00906 * 110.99711 * 38.95279 * 17 15 14 45 45 H 1.09001 * 109.46951 * 299.99281 * 18 17 15 46 46 H 1.09000 * 109.47149 * 59.99643 * 18 17 15 47 47 H 1.09000 * 109.47281 * 299.99307 * 19 18 17 48 48 H 1.09001 * 109.47689 * 59.99387 * 19 18 17 49 49 H 1.09001 * 109.46941 * 299.99344 * 20 19 18 50 50 H 1.08998 * 109.47853 * 59.99528 * 20 19 18 51 51 H 0.97007 * 119.99389 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5808 1.1970 0.0054 5 6 4.2751 0.0011 0.0050 6 6 3.5888 -1.1975 0.0002 7 6 2.2011 -1.2009 -0.0047 8 8 1.5234 -2.3788 -0.0089 9 6 2.2990 -3.5731 -0.1286 10 1 3.1532 -3.3877 -0.7797 11 6 2.7949 -3.9998 1.2545 12 6 1.5958 -4.2599 2.1684 13 6 0.7310 -5.3718 1.5711 14 6 0.2350 -4.9451 0.1881 15 6 1.4342 -4.6850 -0.7258 16 1 2.0257 -5.5960 -0.8171 17 7 0.9581 -4.2747 -2.0535 18 6 0.6551 -5.4445 -2.8889 19 6 0.1628 -4.9780 -4.2603 20 6 -0.1522 -6.1963 -5.1306 21 6 -0.6377 -5.7369 -6.4812 22 1 -0.7145 -4.6815 -6.6972 23 6 -0.9840 -6.6640 -7.4413 24 7 -0.8901 -7.9491 -7.1785 25 14 -1.5866 -6.0945 -9.1152 26 1 -0.5328 -5.2775 -9.7690 27 1 -1.8909 -7.2770 -9.9604 28 1 -2.8143 -5.2762 -8.9472 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5138 32 1 1.6584 2.1315 0.0004 33 1 4.1193 2.1330 0.0095 34 1 5.3552 0.0043 0.0088 35 1 4.1315 -2.1312 -0.0006 36 1 3.3868 -4.9106 1.1631 37 1 3.4110 -3.2077 1.6799 38 1 1.0042 -3.3489 2.2597 39 1 1.9491 -4.5644 3.1536 40 1 -0.1231 -5.5574 2.2225 41 1 1.3225 -6.2828 1.4798 42 1 -0.3565 -4.0341 0.2794 43 1 -0.3814 -5.7370 -0.2372 44 1 0.1562 -3.6668 -1.9781 45 1 1.5555 -6.0465 -3.0112 46 1 -0.1196 -6.0426 -2.4092 47 1 -0.7377 -4.3762 -4.1377 48 1 0.9371 -4.3795 -4.7402 49 1 0.7486 -6.7977 -5.2533 50 1 -0.9264 -6.7952 -4.6510 51 1 -1.1341 -8.6013 -7.8539 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000484649497.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:05 Heat of formation + Delta-G solvation = -47.820330 kcal Electronic energy + Delta-G solvation = -26916.972310 eV Core-core repulsion = 23393.812039 eV Total energy + Delta-G solvation = -3523.160271 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.76166 -38.88109 -36.68489 -35.43656 -33.37412 -32.92247 -31.40845 -30.45789 -29.99143 -28.53686 -26.82424 -25.70368 -23.45578 -22.91356 -22.10740 -21.76015 -21.20401 -20.34088 -19.64930 -17.70327 -16.41898 -16.25072 -15.92903 -15.71121 -15.54948 -14.81553 -14.73007 -14.42487 -14.35781 -14.00033 -13.76504 -13.47894 -13.27567 -13.24484 -12.89749 -12.51700 -12.37074 -12.32558 -12.11757 -12.10047 -11.68514 -11.57876 -11.42398 -11.35583 -11.25643 -10.98296 -10.82272 -10.69750 -10.58513 -10.55062 -10.34703 -10.26919 -9.66422 -9.29391 -9.03742 -8.92084 -8.31674 -8.17764 -8.05540 -5.97148 -3.99022 1.21632 1.37590 3.17141 3.35738 3.39556 3.42638 3.67069 4.19223 4.49088 4.50389 4.61138 4.68510 4.72412 4.86809 4.92451 5.00236 5.02672 5.14539 5.16598 5.26840 5.31191 5.35738 5.38635 5.43517 5.54458 5.56859 5.61338 5.66523 5.72792 5.76077 5.81058 5.88294 5.93177 5.94995 5.99030 6.12300 6.15372 6.22234 6.30093 6.35494 6.36118 6.43205 6.72068 6.75325 6.80520 7.16803 7.34414 7.44661 7.67004 7.71361 7.86604 8.03460 8.47060 9.08004 9.64767 11.14318 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.002790 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.062928 B =10034.021465 C =11343.393087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.121 4.121 3 C -0.086 4.086 4 C -0.162 4.162 5 C -0.087 4.087 6 C -0.207 4.207 7 C 0.143 3.857 8 O -0.294 6.294 9 C 0.099 3.901 10 H 0.079 0.921 11 C -0.146 4.146 12 C -0.113 4.113 13 C -0.115 4.115 14 C -0.148 4.148 15 C 0.096 3.904 16 H 0.091 0.909 17 N -0.684 5.684 18 C 0.059 3.941 19 C -0.107 4.107 20 C 0.023 3.977 21 C -0.519 4.519 22 H 0.054 0.946 23 C 0.056 3.944 24 N -0.897 5.897 25 Si 0.892 3.108 26 H -0.277 1.277 27 H -0.288 1.288 28 H -0.277 1.277 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.128 0.872 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.344 0.656 45 H 0.065 0.935 46 H 0.025 0.975 47 H 0.044 0.956 48 H 0.055 0.945 49 H 0.015 0.985 50 H 0.013 0.987 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.116 13.422 22.224 27.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.122 4.122 3 C -0.104 4.104 4 C -0.180 4.180 5 C -0.106 4.106 6 C -0.226 4.226 7 C 0.097 3.903 8 O -0.207 6.207 9 C 0.042 3.958 10 H 0.097 0.903 11 C -0.184 4.184 12 C -0.151 4.151 13 C -0.153 4.153 14 C -0.187 4.187 15 C -0.015 4.015 16 H 0.109 0.891 17 N -0.313 5.313 18 C -0.069 4.069 19 C -0.145 4.145 20 C -0.014 4.014 21 C -0.557 4.557 22 H 0.073 0.927 23 C -0.145 4.145 24 N -0.537 5.537 25 Si 0.720 3.280 26 H -0.202 1.202 27 H -0.213 1.213 28 H -0.203 1.203 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.142 0.858 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.146 0.854 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.162 0.838 45 H 0.084 0.916 46 H 0.043 0.957 47 H 0.063 0.937 48 H 0.074 0.926 49 H 0.034 0.966 50 H 0.031 0.969 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.505 13.269 21.874 26.961 hybrid contribution -0.812 -0.197 -0.610 1.034 sum 7.693 13.072 21.264 26.119 Atomic orbital electron populations 1.20590 0.90612 1.02380 1.02479 1.19273 0.96508 0.90446 1.05933 1.20857 0.94120 0.96739 0.98643 1.20976 0.94236 0.97934 1.04897 1.20900 0.99593 0.91999 0.98067 1.21293 0.93293 0.99335 1.08693 1.18826 0.90307 0.86016 0.95183 1.86084 1.35757 1.11858 1.86971 1.22526 0.94539 0.83096 0.95603 0.90331 1.22139 0.98532 1.02107 0.95660 1.21425 0.96465 0.99347 0.97859 1.21482 0.99396 0.98149 0.96304 1.22230 0.98657 1.02088 0.95696 1.21616 0.95696 0.95500 0.88708 0.89081 1.60605 1.40632 1.18877 1.11213 1.22164 0.99251 0.91104 0.94415 1.21614 0.99420 1.00448 0.92980 1.19050 0.96592 0.92155 0.93646 1.21232 1.43594 0.92791 0.98116 0.92737 1.25027 0.95833 0.94918 0.98734 1.69959 1.48871 1.00297 1.34551 0.86656 0.79325 0.78017 0.84002 1.20218 1.21322 1.20254 0.91219 0.91239 0.92103 0.85779 0.86293 0.86202 0.85433 0.90518 0.91272 0.91412 0.92198 0.92038 0.92073 0.91012 0.91711 0.83755 0.91613 0.95660 0.93675 0.92634 0.96647 0.96857 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 9.79 36.00 0.35 -0.67 16 2 C -0.12 -1.36 5.89 -104.47 -0.62 -1.97 16 3 C -0.09 -0.85 9.70 -39.60 -0.38 -1.23 16 4 C -0.16 -1.54 10.04 -39.56 -0.40 -1.94 16 5 C -0.09 -0.86 10.04 -39.61 -0.40 -1.26 16 6 C -0.21 -2.25 8.24 -39.43 -0.33 -2.58 16 7 C 0.14 1.70 6.57 -39.21 -0.26 1.44 16 8 O -0.29 -3.49 7.36 -19.41 -0.14 -3.63 16 9 C 0.10 1.08 2.07 -26.73 -0.06 1.02 16 10 H 0.08 0.91 6.31 -51.93 -0.33 0.58 16 11 C -0.15 -1.30 5.27 -26.73 -0.14 -1.44 16 12 C -0.11 -1.00 5.78 -26.73 -0.15 -1.15 16 13 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 14 C -0.15 -1.63 5.03 -26.73 -0.13 -1.76 16 15 C 0.10 1.14 2.25 -67.72 -0.15 0.99 16 16 H 0.09 1.08 7.80 -51.93 -0.41 0.68 16 17 N -0.68 -10.05 6.11 -106.73 -0.65 -10.70 16 18 C 0.06 1.02 5.48 -3.82 -0.02 1.00 16 19 C -0.11 -2.25 5.41 -26.73 -0.14 -2.39 16 20 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 21 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 22 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 23 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 24 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 25 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 28 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.71 7.54 -51.93 -0.39 0.32 16 31 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 32 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 35 H 0.13 1.24 5.43 -52.49 -0.29 0.96 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.60 6.91 -51.93 -0.36 0.24 16 38 H 0.07 0.67 7.68 -51.93 -0.40 0.27 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.83 7.67 -51.93 -0.40 0.44 16 43 H 0.06 0.77 7.46 -51.93 -0.39 0.39 16 44 H 0.34 5.08 8.47 -39.29 -0.33 4.75 16 45 H 0.07 1.15 8.06 -51.93 -0.42 0.73 16 46 H 0.03 0.43 7.44 -51.93 -0.39 0.05 16 47 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 51 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 397.01 15.07 5.98 5.98 Total: -1.00 -30.72 397.01 -11.76 -42.47 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -9.12 Total: 2.00 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: -3.54 Total: -26.50 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.08 Total: -37.32 kcal Atomic # 8 Polarization: -3.49 SS G_CDS: -0.14 Total: -3.63 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.72 -11.76 -42.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000484649497.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.347 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds