Wall clock time and date at job start Tue Mar 31 2020 11:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38169 * 120.02514 * 2 1 4 4 C 1.38246 * 120.05428 * 179.74267 * 3 2 1 5 5 C 1.38289 * 120.10934 * 0.27655 * 4 3 2 6 6 C 1.38116 * 120.06114 * 359.95509 * 5 4 3 7 7 C 1.38709 * 120.03005 * 180.22631 * 2 1 3 8 8 O 1.35896 * 120.05573 * 359.97438 * 7 2 1 9 9 C 1.42902 * 117.00048 * 174.82074 * 8 7 2 10 10 H 1.09004 * 109.46717 * 324.94813 * 9 8 7 11 11 C 1.52998 * 109.47060 * 84.95013 * 9 8 7 12 12 C 1.52995 * 109.47174 * 60.00075 * 11 9 8 13 13 C 1.53003 * 109.47175 * 59.99813 * 12 11 9 14 14 C 1.52998 * 109.47222 * 300.00158 * 13 12 11 15 15 C 1.52995 * 109.47174 * 59.99841 * 14 13 12 16 16 H 1.09002 * 109.47113 * 60.00073 * 15 14 13 17 17 N 1.46894 * 109.47403 * 180.02562 * 15 14 13 18 18 C 1.46904 * 110.99990 * 275.00406 * 17 15 14 19 19 C 1.53000 * 109.46905 * 179.97438 * 18 17 15 20 20 C 1.52999 * 109.46933 * 179.97438 * 19 18 17 21 21 C 1.50697 * 109.47415 * 179.97438 * 20 19 18 22 22 H 1.08003 * 119.99924 * 359.97438 * 21 20 19 23 23 C 1.37883 * 120.00547 * 179.97438 * 21 20 19 24 24 N 1.31510 * 119.99311 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00345 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46994 * 59.99892 * 25 23 21 27 27 H 1.48496 * 109.47262 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.46907 * 300.00114 * 25 23 21 29 29 H 1.08996 * 109.47445 * 89.99940 * 1 2 3 30 30 H 1.09003 * 109.47037 * 210.00283 * 1 2 3 31 31 H 1.08999 * 109.47466 * 329.99921 * 1 2 3 32 32 H 1.07995 * 119.97448 * 0.02562 * 3 2 1 33 33 H 1.07993 * 119.94342 * 180.25231 * 4 3 2 34 34 H 1.08004 * 119.96678 * 179.97438 * 5 4 3 35 35 H 1.07997 * 120.03223 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.47041 * 180.02562 * 11 9 8 37 37 H 1.08998 * 109.47152 * 299.99871 * 11 9 8 38 38 H 1.09002 * 109.47113 * 299.99927 * 12 11 9 39 39 H 1.09004 * 109.47334 * 179.97438 * 12 11 9 40 40 H 1.09004 * 109.47179 * 179.97438 * 13 12 11 41 41 H 1.09002 * 109.47006 * 60.00049 * 13 12 11 42 42 H 1.09002 * 109.47041 * 299.99870 * 14 13 12 43 43 H 1.08998 * 109.47152 * 180.02562 * 14 13 12 44 44 H 1.00906 * 110.99711 * 38.95279 * 17 15 14 45 45 H 1.09001 * 109.46951 * 299.99281 * 18 17 15 46 46 H 1.09000 * 109.47149 * 59.99643 * 18 17 15 47 47 H 1.09000 * 109.47281 * 299.99307 * 19 18 17 48 48 H 1.09001 * 109.47689 * 59.99387 * 19 18 17 49 49 H 1.09001 * 109.46941 * 299.99344 * 20 19 18 50 50 H 1.08998 * 109.47853 * 59.99528 * 20 19 18 51 51 H 0.97007 * 119.99389 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5808 1.1970 0.0054 5 6 4.2751 0.0011 0.0050 6 6 3.5888 -1.1975 0.0002 7 6 2.2011 -1.2009 -0.0047 8 8 1.5234 -2.3788 -0.0089 9 6 2.2990 -3.5731 -0.1286 10 1 3.1532 -3.3877 -0.7797 11 6 2.7949 -3.9998 1.2545 12 6 1.5958 -4.2599 2.1684 13 6 0.7310 -5.3718 1.5711 14 6 0.2350 -4.9451 0.1881 15 6 1.4342 -4.6850 -0.7258 16 1 2.0257 -5.5960 -0.8171 17 7 0.9581 -4.2747 -2.0535 18 6 0.6551 -5.4445 -2.8889 19 6 0.1628 -4.9780 -4.2603 20 6 -0.1522 -6.1963 -5.1306 21 6 -0.6377 -5.7369 -6.4812 22 1 -0.7145 -4.6815 -6.6972 23 6 -0.9840 -6.6640 -7.4413 24 7 -0.8901 -7.9491 -7.1785 25 14 -1.5866 -6.0945 -9.1152 26 1 -0.5328 -5.2775 -9.7690 27 1 -1.8909 -7.2770 -9.9604 28 1 -2.8143 -5.2762 -8.9472 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5138 32 1 1.6584 2.1315 0.0004 33 1 4.1193 2.1330 0.0095 34 1 5.3552 0.0043 0.0088 35 1 4.1315 -2.1312 -0.0006 36 1 3.3868 -4.9106 1.1631 37 1 3.4110 -3.2077 1.6799 38 1 1.0042 -3.3489 2.2597 39 1 1.9491 -4.5644 3.1536 40 1 -0.1231 -5.5574 2.2225 41 1 1.3225 -6.2828 1.4798 42 1 -0.3565 -4.0341 0.2794 43 1 -0.3814 -5.7370 -0.2372 44 1 0.1562 -3.6668 -1.9781 45 1 1.5555 -6.0465 -3.0112 46 1 -0.1196 -6.0426 -2.4092 47 1 -0.7377 -4.3762 -4.1377 48 1 0.9371 -4.3795 -4.7402 49 1 0.7486 -6.7977 -5.2533 50 1 -0.9264 -6.7952 -4.6510 51 1 -1.1341 -8.6013 -7.8539 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000484649497.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:04 Heat of formation + Delta-G solvation = -63.205232 kcal Electronic energy + Delta-G solvation = -26917.639449 eV Core-core repulsion = 23393.812039 eV Total energy + Delta-G solvation = -3523.827410 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.59235 -39.72776 -37.69949 -36.67746 -35.23257 -33.68364 -33.14583 -31.25266 -30.83448 -29.85246 -27.62165 -27.41272 -24.50399 -24.24606 -23.11517 -22.63641 -22.15311 -21.89257 -20.63124 -18.50100 -18.48935 -17.27907 -16.81089 -16.64122 -16.53893 -16.44276 -15.99210 -15.68104 -15.20571 -15.07309 -14.72402 -14.52635 -14.33278 -14.10885 -14.01006 -13.83467 -13.73143 -13.33966 -13.11275 -13.06063 -13.01674 -12.89457 -12.71467 -12.48282 -12.32808 -12.25838 -12.15578 -12.10819 -11.74263 -11.59036 -11.49864 -11.43165 -11.27641 -11.17121 -10.91552 -10.55741 -9.68970 -9.31489 -8.92376 -8.21004 -6.32049 0.44780 0.59464 1.39051 1.42401 1.50369 2.34565 2.40355 2.89796 3.10094 3.11942 3.67153 3.77286 3.93313 3.98518 4.00610 4.12904 4.16088 4.23698 4.27314 4.35335 4.37014 4.42631 4.46512 4.51288 4.58210 4.66367 4.71217 4.77846 4.82633 4.85671 4.87470 4.96822 4.97495 5.03273 5.06627 5.15015 5.15896 5.21939 5.24372 5.31297 5.37382 5.45752 5.50840 5.52759 5.60635 5.67386 5.74064 5.84779 5.97767 6.07694 6.26760 6.43944 6.61146 6.84398 7.37040 8.90729 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.002790 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.062928 B =10034.021465 C =11343.393087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.141 4.141 3 C -0.091 4.091 4 C -0.165 4.165 5 C -0.094 4.094 6 C -0.218 4.218 7 C 0.120 3.880 8 O -0.303 6.303 9 C 0.102 3.898 10 H 0.071 0.929 11 C -0.140 4.140 12 C -0.109 4.109 13 C -0.111 4.111 14 C -0.142 4.142 15 C 0.095 3.905 16 H 0.094 0.906 17 N -0.685 5.685 18 C 0.074 3.926 19 C -0.092 4.092 20 C 0.028 3.972 21 C -0.546 4.546 22 H 0.057 0.943 23 C 0.000 4.000 24 N -0.933 5.933 25 Si 0.965 3.035 26 H -0.267 1.267 27 H -0.281 1.281 28 H -0.267 1.267 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.134 0.866 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.343 0.657 45 H 0.064 0.936 46 H 0.025 0.975 47 H 0.046 0.954 48 H 0.049 0.951 49 H -0.008 1.008 50 H -0.009 1.009 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.744 14.840 22.836 28.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.142 4.142 3 C -0.109 4.109 4 C -0.183 4.183 5 C -0.112 4.112 6 C -0.237 4.237 7 C 0.075 3.925 8 O -0.217 6.217 9 C 0.045 3.955 10 H 0.088 0.912 11 C -0.178 4.178 12 C -0.147 4.147 13 C -0.150 4.150 14 C -0.181 4.181 15 C -0.015 4.015 16 H 0.112 0.888 17 N -0.315 5.315 18 C -0.055 4.055 19 C -0.130 4.130 20 C -0.010 4.010 21 C -0.584 4.584 22 H 0.076 0.924 23 C -0.198 4.198 24 N -0.573 5.573 25 Si 0.789 3.211 26 H -0.192 1.192 27 H -0.206 1.206 28 H -0.192 1.192 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.162 0.838 33 H 0.160 0.840 34 H 0.159 0.841 35 H 0.152 0.848 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.162 0.838 45 H 0.082 0.918 46 H 0.043 0.957 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.010 0.990 50 H 0.009 0.991 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.141 14.702 22.507 28.395 hybrid contribution -0.979 -0.611 -0.775 1.390 sum 8.161 14.091 21.732 27.156 Atomic orbital electron populations 1.20558 0.90184 1.02804 1.02116 1.19562 0.97163 0.90883 1.06549 1.21171 0.94654 0.97090 0.98004 1.21329 0.94293 0.98873 1.03853 1.21233 1.00814 0.91770 0.97419 1.21472 0.93081 1.00209 1.08942 1.19080 0.90976 0.86131 0.96333 1.86059 1.36187 1.12150 1.87291 1.22476 0.93735 0.82597 0.96664 0.91156 1.22108 0.98693 1.02791 0.94223 1.21389 0.96105 0.98570 0.98594 1.21467 0.99872 0.98568 0.95046 1.22140 0.97934 1.01298 0.96708 1.21698 0.96217 0.96211 0.87389 0.88781 1.60542 1.40436 1.17704 1.12816 1.21849 0.98936 0.91823 0.92855 1.21364 0.99367 0.98014 0.94251 1.18941 0.94625 0.93539 0.93879 1.21676 1.44042 0.93152 0.99503 0.92443 1.25985 0.95767 0.94936 1.03123 1.70088 1.49585 1.01561 1.36092 0.85504 0.79124 0.77829 0.78627 1.19220 1.20629 1.19159 0.91920 0.92156 0.90332 0.83777 0.83960 0.84123 0.84847 0.89183 0.90816 0.92651 0.90541 0.91338 0.91287 0.91831 0.92835 0.83814 0.91779 0.95692 0.93504 0.93224 0.98963 0.99056 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.95 9.79 71.23 0.70 -1.25 16 2 C -0.14 -3.09 5.89 -19.77 -0.12 -3.21 16 3 C -0.09 -1.68 9.70 22.26 0.22 -1.46 16 4 C -0.17 -2.81 10.04 22.28 0.22 -2.59 16 5 C -0.09 -1.70 10.04 22.25 0.22 -1.47 16 6 C -0.22 -4.57 8.24 22.37 0.18 -4.38 16 7 C 0.12 2.83 6.57 22.51 0.15 2.98 16 8 O -0.30 -7.19 7.36 -92.38 -0.68 -7.87 16 9 C 0.10 2.17 2.07 30.59 0.06 2.23 16 10 H 0.07 1.60 6.31 -2.38 -0.02 1.59 16 11 C -0.14 -2.28 5.27 30.59 0.16 -2.12 16 12 C -0.11 -1.75 5.78 30.59 0.18 -1.57 16 13 C -0.11 -1.90 5.92 30.59 0.18 -1.72 16 14 C -0.14 -3.08 5.03 30.59 0.15 -2.93 16 15 C 0.09 2.24 2.25 44.92 0.10 2.34 16 16 H 0.09 2.17 7.80 -2.39 -0.02 2.15 16 17 N -0.69 -20.23 6.11 -491.57 -3.01 -23.24 16 18 C 0.07 2.60 5.48 86.30 0.47 3.07 16 19 C -0.09 -3.96 5.41 30.59 0.17 -3.79 16 20 C 0.03 1.51 4.97 29.85 0.15 1.66 16 21 C -0.55 -32.06 9.11 25.60 0.23 -31.83 16 22 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 23 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 24 N -0.93 -57.72 13.29 21.45 0.28 -57.44 16 25 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 27 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 28 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 1.26 7.54 -2.39 -0.02 1.24 16 31 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 32 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 34 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 35 H 0.13 2.50 5.43 -2.91 -0.02 2.48 16 36 H 0.09 1.23 8.14 -2.39 -0.02 1.22 16 37 H 0.07 1.16 6.91 -2.39 -0.02 1.14 16 38 H 0.05 1.04 7.68 -2.39 -0.02 1.02 16 39 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.06 1.49 7.67 -2.39 -0.02 1.47 16 43 H 0.05 1.28 7.46 -2.39 -0.02 1.26 16 44 H 0.34 10.25 8.47 -89.69 -0.76 9.49 16 45 H 0.06 2.26 8.06 -2.39 -0.02 2.24 16 46 H 0.02 0.87 7.44 -2.39 -0.02 0.85 16 47 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 48 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 49 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 50 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 51 H 0.26 15.31 8.31 -92.70 -0.77 14.54 16 Total: -1.00 -66.33 397.01 2.65 -63.68 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.13 Total: 23.33 kcal Atomic # 6 Polarization: -49.50 SS G_CDS: 3.90 Total: -45.61 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -2.72 Total: -80.68 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.68 Total: -7.87 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -66.33 2.65 -63.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000484649497.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.474 kcal (2) G-P(sol) polarization free energy of solvation -66.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds