Wall clock time and date at job start Tue Mar 31 2020 11:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38170 * 120.03297 * 2 1 4 4 C 1.38238 * 120.05958 * 180.25469 * 3 2 1 5 5 C 1.38291 * 120.11077 * 359.76239 * 4 3 2 6 6 C 1.38126 * 120.05493 * 0.02562 * 5 4 3 7 7 C 1.38718 * 120.02894 * 179.76654 * 2 1 3 8 8 O 1.35903 * 120.05170 * 0.02562 * 7 2 1 9 9 C 1.42901 * 116.99744 * 185.14608 * 8 7 2 10 10 H 1.09000 * 109.47325 * 35.12835 * 9 8 7 11 11 C 1.52999 * 109.46988 * 275.12699 * 9 8 7 12 12 C 1.52998 * 109.47252 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.47113 * 59.99703 * 12 11 9 14 14 C 1.52999 * 109.47305 * 300.00265 * 13 12 11 15 15 C 1.52995 * 109.46949 * 155.12981 * 9 8 7 16 16 H 1.08999 * 109.47591 * 60.00195 * 15 9 8 17 17 N 1.46900 * 109.46827 * 299.99523 * 15 9 8 18 18 C 1.46901 * 110.99812 * 155.00185 * 17 15 9 19 19 C 1.52997 * 109.47398 * 180.02562 * 18 17 15 20 20 C 1.53005 * 109.47402 * 180.02562 * 19 18 17 21 21 C 1.50704 * 109.47010 * 180.02562 * 20 19 18 22 22 H 1.07999 * 120.00113 * 359.97438 * 21 20 19 23 23 C 1.37879 * 119.99695 * 179.97438 * 21 20 19 24 24 N 1.31508 * 120.00064 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99840 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47185 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47064 * 119.99705 * 25 23 21 28 28 H 1.48497 * 109.47207 * 240.00274 * 25 23 21 29 29 H 1.08995 * 109.47443 * 270.23554 * 1 2 3 30 30 H 1.09008 * 109.47074 * 30.23252 * 1 2 3 31 31 H 1.08999 * 109.47296 * 150.22687 * 1 2 3 32 32 H 1.07997 * 119.96765 * 359.97438 * 3 2 1 33 33 H 1.08004 * 119.94890 * 179.74803 * 4 3 2 34 34 H 1.08003 * 119.97259 * 179.97438 * 5 4 3 35 35 H 1.08000 * 120.02643 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.47199 * 300.00213 * 11 9 8 37 37 H 1.09006 * 109.47245 * 60.00234 * 11 9 8 38 38 H 1.08996 * 109.47533 * 180.02562 * 12 11 9 39 39 H 1.09000 * 109.47172 * 300.00204 * 12 11 9 40 40 H 1.09000 * 109.46692 * 60.00208 * 13 12 11 41 41 H 1.08993 * 109.47332 * 179.97438 * 13 12 11 42 42 H 1.08999 * 109.47345 * 300.00168 * 14 13 12 43 43 H 1.08993 * 109.47129 * 179.97438 * 14 13 12 44 44 H 1.00901 * 111.00504 * 278.95141 * 17 15 9 45 45 H 1.09004 * 109.47308 * 60.00260 * 18 17 15 46 46 H 1.08997 * 109.47391 * 300.00474 * 18 17 15 47 47 H 1.08994 * 109.47391 * 59.99945 * 19 18 17 48 48 H 1.09001 * 109.46826 * 299.99996 * 19 18 17 49 49 H 1.08994 * 109.47148 * 59.99483 * 20 19 18 50 50 H 1.09001 * 109.46870 * 299.99655 * 20 19 18 51 51 H 0.96999 * 119.99934 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1968 -0.0053 5 6 4.2752 0.0009 -0.0057 6 6 3.5886 -1.1977 -0.0013 7 6 2.2012 -1.2010 0.0049 8 8 1.5233 -2.3789 0.0092 9 6 2.2988 -3.5732 0.1283 10 1 3.1527 -3.3885 0.7801 11 6 2.7957 -3.9987 -1.2548 12 6 3.6255 -5.2778 -1.1275 13 6 2.7599 -6.3901 -0.5320 14 6 2.2631 -5.9646 0.8512 15 6 1.4338 -4.6857 0.7239 16 1 0.5799 -4.8705 0.0721 17 7 0.9568 -4.2771 2.0519 18 6 -0.2875 -4.9750 2.4020 19 6 -0.7526 -4.5241 3.7881 20 6 -2.0482 -5.2515 4.1530 21 6 -2.5066 -4.8068 5.5181 22 1 -1.9311 -4.0786 6.0703 23 6 -3.6607 -5.3297 6.0619 24 7 -4.3617 -6.2161 5.3893 25 14 -4.2284 -4.7791 7.7542 26 1 -3.2717 -3.7813 8.2970 27 1 -5.5764 -4.1650 7.6485 28 1 -4.2888 -5.9526 8.6622 29 1 -0.3634 0.0042 1.0276 30 1 -0.3634 0.8880 -0.5175 31 1 -0.3634 -0.8920 -0.5103 32 1 1.6585 2.1315 -0.0004 33 1 4.1196 2.1329 -0.0094 34 1 5.3552 0.0040 -0.0103 35 1 4.1313 -2.1314 -0.0020 36 1 1.9418 -4.1834 -1.9067 37 1 3.4120 -3.2061 -1.6793 38 1 3.9798 -5.5807 -2.1127 39 1 4.4793 -5.0935 -0.4755 40 1 1.9060 -6.5743 -1.1839 41 1 3.3509 -7.3014 -0.4416 42 1 3.1170 -5.7802 1.5031 43 1 1.6461 -6.7568 1.2751 44 1 1.6661 -4.4288 2.7534 45 1 -0.1110 -6.0506 2.4097 46 1 -1.0562 -4.7383 1.6664 47 1 -0.9292 -3.4486 3.7800 48 1 0.0161 -4.7606 4.5239 49 1 -1.8712 -6.3269 4.1612 50 1 -2.8170 -5.0154 3.4173 51 1 -5.1737 -6.5836 5.7718 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000484649499.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:10 Heat of formation + Delta-G solvation = -47.650903 kcal Electronic energy + Delta-G solvation = -26818.095866 eV Core-core repulsion = 23294.942943 eV Total energy + Delta-G solvation = -3523.152924 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.63796 -38.89616 -36.83863 -35.55983 -33.38378 -32.83469 -31.42011 -30.48242 -29.84684 -28.51857 -26.72452 -25.70308 -23.50790 -22.93307 -22.00217 -21.52406 -21.25822 -20.47215 -19.69057 -18.04448 -16.51171 -16.24249 -15.77218 -15.46977 -15.36938 -14.87678 -14.75794 -14.51930 -14.35272 -14.05280 -13.61159 -13.47312 -13.29185 -13.19094 -12.93652 -12.76555 -12.42522 -12.24663 -12.20024 -11.78214 -11.64068 -11.49850 -11.39917 -11.35082 -11.25178 -11.03141 -10.83955 -10.75402 -10.58343 -10.54794 -10.53363 -10.25433 -9.66106 -9.28815 -9.00486 -8.87196 -8.31627 -8.12658 -8.03101 -5.96667 -3.98355 1.26163 1.42454 3.17319 3.33403 3.40682 3.45534 3.71605 4.15467 4.44893 4.49750 4.62916 4.72685 4.74424 4.80478 4.89343 4.94052 4.97053 5.03446 5.18137 5.22380 5.25103 5.33185 5.39283 5.45214 5.54383 5.59730 5.64762 5.73326 5.79039 5.80633 5.81909 5.83902 5.85701 5.88147 5.92698 6.05811 6.10826 6.26155 6.30737 6.36784 6.41851 6.50034 6.76593 6.78427 6.81187 7.17981 7.35651 7.50520 7.66412 7.72747 7.87849 8.04260 8.47887 9.09156 9.65530 11.14869 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011545 B = 0.002999 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.715859 B = 9335.123151 C =11171.989957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.117 4.117 3 C -0.085 4.085 4 C -0.163 4.163 5 C -0.089 4.089 6 C -0.212 4.212 7 C 0.142 3.858 8 O -0.285 6.285 9 C 0.102 3.898 10 H 0.070 0.930 11 C -0.146 4.146 12 C -0.115 4.115 13 C -0.119 4.119 14 C -0.147 4.147 15 C 0.093 3.907 16 H 0.086 0.914 17 N -0.679 5.679 18 C 0.062 3.938 19 C -0.106 4.106 20 C 0.023 3.977 21 C -0.517 4.517 22 H 0.055 0.945 23 C 0.055 3.945 24 N -0.897 5.897 25 Si 0.891 3.109 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.285 1.285 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.126 0.874 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.336 0.664 45 H 0.024 0.976 46 H 0.067 0.933 47 H 0.056 0.944 48 H 0.043 0.957 49 H 0.013 0.987 50 H 0.016 0.984 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.296 7.640 -16.488 26.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.118 4.118 3 C -0.103 4.103 4 C -0.182 4.182 5 C -0.107 4.107 6 C -0.231 4.231 7 C 0.096 3.904 8 O -0.197 6.197 9 C 0.045 3.955 10 H 0.088 0.912 11 C -0.185 4.185 12 C -0.153 4.153 13 C -0.157 4.157 14 C -0.186 4.186 15 C -0.018 4.018 16 H 0.104 0.896 17 N -0.308 5.308 18 C -0.066 4.066 19 C -0.144 4.144 20 C -0.015 4.015 21 C -0.555 4.555 22 H 0.074 0.926 23 C -0.146 4.146 24 N -0.537 5.537 25 Si 0.719 3.281 26 H -0.197 1.197 27 H -0.210 1.210 28 H -0.211 1.211 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.143 0.857 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.144 0.856 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.153 0.847 45 H 0.042 0.958 46 H 0.085 0.915 47 H 0.075 0.925 48 H 0.062 0.938 49 H 0.031 0.969 50 H 0.034 0.966 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 18.575 8.055 -16.709 26.251 hybrid contribution 0.262 -0.761 1.177 1.426 sum 18.837 7.294 -15.532 25.481 Atomic orbital electron populations 1.20601 0.90346 1.02417 1.02780 1.19332 0.96730 0.90382 1.05316 1.20873 0.94090 0.96795 0.98580 1.20965 0.94240 0.97881 1.05065 1.20872 0.99453 0.92020 0.98386 1.21265 0.93261 0.99225 1.09320 1.18878 0.90246 0.86222 0.95031 1.86196 1.35247 1.11588 1.86713 1.22420 0.93980 0.83402 0.95734 0.91191 1.22153 1.00769 0.98148 0.97396 1.21491 0.98107 0.94481 1.01218 1.21530 0.99778 0.98032 0.96372 1.22266 1.00282 0.98251 0.97809 1.21570 0.97011 0.90536 0.92655 0.89586 1.60568 1.07126 1.60883 1.02193 1.22135 0.90377 0.94763 0.99316 1.21612 0.99422 1.00855 0.92535 1.19061 0.90945 0.95201 0.96300 1.21304 1.08050 1.23971 1.02195 0.92645 1.25030 0.96709 0.95160 0.97664 1.69976 1.16297 1.29609 1.37771 0.86551 0.78622 0.78493 0.84439 1.19716 1.21013 1.21084 0.90966 0.92152 0.91051 0.85716 0.86321 0.86310 0.85616 0.90707 0.91195 0.91448 0.91892 0.91565 0.91679 0.91605 0.90790 0.84671 0.95824 0.91457 0.92541 0.93802 0.96891 0.96593 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 9.79 36.00 0.35 -0.90 16 2 C -0.12 -1.47 5.89 -104.47 -0.62 -2.08 16 3 C -0.09 -0.92 9.70 -39.61 -0.38 -1.30 16 4 C -0.16 -1.62 10.04 -39.56 -0.40 -2.02 16 5 C -0.09 -0.89 10.04 -39.60 -0.40 -1.29 16 6 C -0.21 -2.37 8.24 -39.43 -0.32 -2.70 16 7 C 0.14 1.85 6.57 -39.22 -0.26 1.59 16 8 O -0.28 -3.90 8.71 -19.43 -0.17 -4.07 16 9 C 0.10 1.14 1.77 -26.73 -0.05 1.10 16 10 H 0.07 0.77 6.32 -51.93 -0.33 0.44 16 11 C -0.15 -1.33 5.18 -26.73 -0.14 -1.47 16 12 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 13 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 14 C -0.15 -1.47 5.17 -26.75 -0.14 -1.61 16 15 C 0.09 1.13 2.16 -67.74 -0.15 0.98 16 16 H 0.09 1.14 7.80 -51.93 -0.40 0.74 16 17 N -0.68 -10.02 6.12 -106.75 -0.65 -10.67 16 18 C 0.06 1.09 5.48 -3.83 -0.02 1.07 16 19 C -0.11 -2.25 5.41 -26.73 -0.14 -2.40 16 20 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 21 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 22 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 23 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 24 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 25 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 26 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.59 8.09 -51.92 -0.42 0.17 16 31 H 0.07 0.91 7.53 -51.93 -0.39 0.52 16 32 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 34 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 35 H 0.13 1.22 5.43 -52.49 -0.28 0.94 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.62 6.90 -51.93 -0.36 0.26 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 43 H 0.07 0.81 7.45 -51.93 -0.39 0.43 16 44 H 0.34 4.66 8.47 -39.29 -0.33 4.33 16 45 H 0.02 0.40 7.43 -51.93 -0.39 0.02 16 46 H 0.07 1.23 8.05 -51.93 -0.42 0.81 16 47 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 48 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 49 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 399.05 15.07 6.01 6.01 Total: -1.00 -31.36 399.05 -11.79 -43.15 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -9.17 Total: 1.73 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: -3.53 Total: -26.52 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.08 Total: -37.31 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: -0.17 Total: -4.07 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.36 -11.79 -43.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000484649499.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.503 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds