Wall clock time and date at job start Tue Mar 31 2020 11:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38170 * 120.03297 * 2 1 4 4 C 1.38238 * 120.05958 * 180.25469 * 3 2 1 5 5 C 1.38291 * 120.11077 * 359.76239 * 4 3 2 6 6 C 1.38126 * 120.05493 * 0.02562 * 5 4 3 7 7 C 1.38718 * 120.02894 * 179.76654 * 2 1 3 8 8 O 1.35903 * 120.05170 * 0.02562 * 7 2 1 9 9 C 1.42901 * 116.99744 * 185.14608 * 8 7 2 10 10 H 1.09000 * 109.47325 * 35.12835 * 9 8 7 11 11 C 1.52999 * 109.46988 * 275.12699 * 9 8 7 12 12 C 1.52998 * 109.47252 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.47113 * 59.99703 * 12 11 9 14 14 C 1.52999 * 109.47305 * 300.00265 * 13 12 11 15 15 C 1.52995 * 109.46949 * 155.12981 * 9 8 7 16 16 H 1.08999 * 109.47591 * 60.00195 * 15 9 8 17 17 N 1.46900 * 109.46827 * 299.99523 * 15 9 8 18 18 C 1.46901 * 110.99812 * 155.00185 * 17 15 9 19 19 C 1.52997 * 109.47398 * 180.02562 * 18 17 15 20 20 C 1.53005 * 109.47402 * 180.02562 * 19 18 17 21 21 C 1.50704 * 109.47010 * 180.02562 * 20 19 18 22 22 H 1.07999 * 120.00113 * 359.97438 * 21 20 19 23 23 C 1.37879 * 119.99695 * 179.97438 * 21 20 19 24 24 N 1.31508 * 120.00064 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99840 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47185 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47064 * 119.99705 * 25 23 21 28 28 H 1.48497 * 109.47207 * 240.00274 * 25 23 21 29 29 H 1.08995 * 109.47443 * 270.23554 * 1 2 3 30 30 H 1.09008 * 109.47074 * 30.23252 * 1 2 3 31 31 H 1.08999 * 109.47296 * 150.22687 * 1 2 3 32 32 H 1.07997 * 119.96765 * 359.97438 * 3 2 1 33 33 H 1.08004 * 119.94890 * 179.74803 * 4 3 2 34 34 H 1.08003 * 119.97259 * 179.97438 * 5 4 3 35 35 H 1.08000 * 120.02643 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.47199 * 300.00213 * 11 9 8 37 37 H 1.09006 * 109.47245 * 60.00234 * 11 9 8 38 38 H 1.08996 * 109.47533 * 180.02562 * 12 11 9 39 39 H 1.09000 * 109.47172 * 300.00204 * 12 11 9 40 40 H 1.09000 * 109.46692 * 60.00208 * 13 12 11 41 41 H 1.08993 * 109.47332 * 179.97438 * 13 12 11 42 42 H 1.08999 * 109.47345 * 300.00168 * 14 13 12 43 43 H 1.08993 * 109.47129 * 179.97438 * 14 13 12 44 44 H 1.00901 * 111.00504 * 278.95141 * 17 15 9 45 45 H 1.09004 * 109.47308 * 60.00260 * 18 17 15 46 46 H 1.08997 * 109.47391 * 300.00474 * 18 17 15 47 47 H 1.08994 * 109.47391 * 59.99945 * 19 18 17 48 48 H 1.09001 * 109.46826 * 299.99996 * 19 18 17 49 49 H 1.08994 * 109.47148 * 59.99483 * 20 19 18 50 50 H 1.09001 * 109.46870 * 299.99655 * 20 19 18 51 51 H 0.96999 * 119.99934 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1968 -0.0053 5 6 4.2752 0.0009 -0.0057 6 6 3.5886 -1.1977 -0.0013 7 6 2.2012 -1.2010 0.0049 8 8 1.5233 -2.3789 0.0092 9 6 2.2988 -3.5732 0.1283 10 1 3.1527 -3.3885 0.7801 11 6 2.7957 -3.9987 -1.2548 12 6 3.6255 -5.2778 -1.1275 13 6 2.7599 -6.3901 -0.5320 14 6 2.2631 -5.9646 0.8512 15 6 1.4338 -4.6857 0.7239 16 1 0.5799 -4.8705 0.0721 17 7 0.9568 -4.2771 2.0519 18 6 -0.2875 -4.9750 2.4020 19 6 -0.7526 -4.5241 3.7881 20 6 -2.0482 -5.2515 4.1530 21 6 -2.5066 -4.8068 5.5181 22 1 -1.9311 -4.0786 6.0703 23 6 -3.6607 -5.3297 6.0619 24 7 -4.3617 -6.2161 5.3893 25 14 -4.2284 -4.7791 7.7542 26 1 -3.2717 -3.7813 8.2970 27 1 -5.5764 -4.1650 7.6485 28 1 -4.2888 -5.9526 8.6622 29 1 -0.3634 0.0042 1.0276 30 1 -0.3634 0.8880 -0.5175 31 1 -0.3634 -0.8920 -0.5103 32 1 1.6585 2.1315 -0.0004 33 1 4.1196 2.1329 -0.0094 34 1 5.3552 0.0040 -0.0103 35 1 4.1313 -2.1314 -0.0020 36 1 1.9418 -4.1834 -1.9067 37 1 3.4120 -3.2061 -1.6793 38 1 3.9798 -5.5807 -2.1127 39 1 4.4793 -5.0935 -0.4755 40 1 1.9060 -6.5743 -1.1839 41 1 3.3509 -7.3014 -0.4416 42 1 3.1170 -5.7802 1.5031 43 1 1.6461 -6.7568 1.2751 44 1 1.6661 -4.4288 2.7534 45 1 -0.1110 -6.0506 2.4097 46 1 -1.0562 -4.7383 1.6664 47 1 -0.9292 -3.4486 3.7800 48 1 0.0161 -4.7606 4.5239 49 1 -1.8712 -6.3269 4.1612 50 1 -2.8170 -5.0154 3.4173 51 1 -5.1737 -6.5836 5.7718 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000484649499.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:09 Heat of formation + Delta-G solvation = -64.006968 kcal Electronic energy + Delta-G solvation = -26818.805119 eV Core-core repulsion = 23294.942943 eV Total energy + Delta-G solvation = -3523.862176 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.51245 -39.77049 -37.81460 -36.85969 -35.25976 -33.67855 -33.16195 -31.27291 -30.75545 -29.80916 -27.64501 -27.40284 -24.52084 -24.30682 -23.10750 -22.39442 -22.13983 -21.98683 -20.77434 -18.90019 -18.49533 -17.39578 -16.65228 -16.62246 -16.45004 -16.32582 -15.90231 -15.66678 -15.39737 -15.13832 -14.64093 -14.40419 -14.35882 -14.29550 -14.00721 -13.80670 -13.67101 -13.65660 -13.35321 -13.12704 -13.05271 -12.75947 -12.49356 -12.44602 -12.28238 -12.22331 -12.20443 -12.09415 -11.77352 -11.57980 -11.52180 -11.47102 -11.37816 -11.25721 -10.90975 -10.57199 -9.69640 -9.30643 -8.92831 -8.21416 -6.32481 0.44097 0.59031 1.38707 1.39426 1.53056 2.31579 2.40016 2.89107 3.07542 3.11574 3.64184 3.84036 3.91687 3.95257 4.00188 4.09705 4.13572 4.14712 4.24542 4.25721 4.35285 4.37293 4.45849 4.48943 4.53396 4.68037 4.72355 4.76897 4.79501 4.82316 4.84371 4.92834 4.99349 5.03095 5.07262 5.09271 5.12307 5.20079 5.23430 5.26257 5.36234 5.40879 5.50183 5.50802 5.60393 5.66916 5.73386 5.84309 5.99221 6.04361 6.26018 6.46467 6.66108 6.84272 7.36753 8.90806 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011545 B = 0.002999 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.715859 B = 9335.123151 C =11171.989957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.144 4.144 3 C -0.090 4.090 4 C -0.165 4.165 5 C -0.091 4.091 6 C -0.217 4.217 7 C 0.118 3.882 8 O -0.310 6.310 9 C 0.103 3.897 10 H 0.075 0.925 11 C -0.139 4.139 12 C -0.109 4.109 13 C -0.116 4.116 14 C -0.141 4.141 15 C 0.094 3.906 16 H 0.069 0.931 17 N -0.684 5.684 18 C 0.079 3.921 19 C -0.091 4.091 20 C 0.027 3.973 21 C -0.543 4.543 22 H 0.058 0.942 23 C -0.002 4.002 24 N -0.934 5.934 25 Si 0.966 3.034 26 H -0.263 1.263 27 H -0.277 1.277 28 H -0.276 1.276 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.138 0.862 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.343 0.657 45 H 0.027 0.973 46 H 0.053 0.947 47 H 0.046 0.954 48 H 0.051 0.949 49 H -0.008 1.008 50 H -0.011 1.011 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.726 8.587 -16.338 28.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.145 4.145 3 C -0.108 4.108 4 C -0.183 4.183 5 C -0.109 4.109 6 C -0.236 4.236 7 C 0.072 3.928 8 O -0.224 6.224 9 C 0.047 3.953 10 H 0.093 0.907 11 C -0.177 4.177 12 C -0.147 4.147 13 C -0.155 4.155 14 C -0.180 4.180 15 C -0.016 4.016 16 H 0.087 0.913 17 N -0.314 5.314 18 C -0.050 4.050 19 C -0.129 4.129 20 C -0.010 4.010 21 C -0.581 4.581 22 H 0.076 0.924 23 C -0.199 4.199 24 N -0.574 5.574 25 Si 0.790 3.210 26 H -0.187 1.187 27 H -0.203 1.203 28 H -0.201 1.201 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.161 0.839 33 H 0.163 0.837 34 H 0.164 0.836 35 H 0.156 0.844 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.080 0.920 44 H 0.161 0.839 45 H 0.046 0.954 46 H 0.072 0.928 47 H 0.065 0.935 48 H 0.070 0.930 49 H 0.011 0.989 50 H 0.007 0.993 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 21.028 9.006 -16.572 28.247 hybrid contribution -0.483 -1.023 1.090 1.571 sum 20.545 7.983 -15.482 26.935 Atomic orbital electron populations 1.20531 0.90777 1.02516 1.01846 1.19573 0.96864 0.91280 1.06779 1.21160 0.94863 0.96833 0.97980 1.21344 0.94012 0.99109 1.03796 1.21261 1.00926 0.91545 0.97147 1.21465 0.92569 1.00439 1.09107 1.19153 0.91243 0.86036 0.96348 1.86160 1.36553 1.12456 1.87190 1.22478 0.93461 0.82393 0.97016 0.90707 1.22097 1.00706 0.99207 0.95734 1.21482 0.97815 0.93047 1.02348 1.21525 0.99983 0.98982 0.94961 1.22195 1.00019 0.96465 0.99335 1.21623 0.97080 0.92268 0.90675 0.91297 1.60464 1.06410 1.60800 1.03687 1.21776 0.91527 0.95038 0.96657 1.21353 0.97136 0.99443 0.94923 1.18950 0.92667 0.94413 0.95003 1.21717 1.08701 1.24322 1.03325 0.92394 1.25998 0.96717 0.95029 1.02161 1.70102 1.16814 1.30634 1.39843 0.85384 0.78250 0.78393 0.78944 1.18671 1.20297 1.20123 0.92418 0.90191 0.92768 0.83897 0.83690 0.83588 0.84403 0.91652 0.90642 0.89816 0.90772 0.92071 0.90155 0.90483 0.91974 0.83896 0.95446 0.92808 0.93500 0.93048 0.98914 0.99306 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.49 9.79 71.23 0.70 -1.80 16 2 C -0.14 -3.64 5.89 -19.77 -0.12 -3.76 16 3 C -0.09 -1.83 9.70 22.25 0.22 -1.61 16 4 C -0.16 -2.87 10.04 22.28 0.22 -2.64 16 5 C -0.09 -1.60 10.04 22.26 0.22 -1.37 16 6 C -0.22 -4.55 8.24 22.36 0.18 -4.37 16 7 C 0.12 3.06 6.57 22.51 0.15 3.21 16 8 O -0.31 -8.71 8.71 -92.45 -0.81 -9.52 16 9 C 0.10 2.28 1.77 30.59 0.05 2.33 16 10 H 0.08 1.56 6.32 -2.39 -0.02 1.54 16 11 C -0.14 -2.38 5.18 30.59 0.16 -2.22 16 12 C -0.11 -1.39 5.92 30.60 0.18 -1.21 16 13 C -0.12 -1.72 5.92 30.60 0.18 -1.54 16 14 C -0.14 -2.70 5.17 30.58 0.16 -2.54 16 15 C 0.09 2.29 2.16 44.90 0.10 2.39 16 16 H 0.07 1.91 7.80 -2.39 -0.02 1.89 16 17 N -0.68 -20.49 6.12 -491.66 -3.01 -23.49 16 18 C 0.08 2.86 5.48 86.30 0.47 3.33 16 19 C -0.09 -3.95 5.41 30.59 0.17 -3.78 16 20 C 0.03 1.50 4.97 29.85 0.15 1.65 16 21 C -0.54 -32.06 9.11 25.60 0.23 -31.82 16 22 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 23 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 24 N -0.93 -58.08 13.29 21.45 0.28 -57.80 16 25 Si 0.97 45.35 29.54 68.60 2.03 47.38 16 26 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 27 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 28 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.08 1.58 8.09 -2.38 -0.02 1.56 16 31 H 0.05 1.49 7.53 -2.39 -0.02 1.47 16 32 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 33 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 34 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 35 H 0.14 2.42 5.43 -2.91 -0.02 2.40 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 1.22 6.90 -2.38 -0.02 1.21 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.08 1.31 8.13 -2.39 -0.02 1.29 16 43 H 0.06 1.34 7.45 -2.39 -0.02 1.32 16 44 H 0.34 9.40 8.47 -89.69 -0.76 8.64 16 45 H 0.03 0.97 7.43 -2.39 -0.02 0.95 16 46 H 0.05 2.08 8.05 -2.39 -0.02 2.06 16 47 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 49 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 50 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 51 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -69.08 399.05 2.51 -66.57 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.13 Total: 22.25 kcal Atomic # 6 Polarization: -49.28 SS G_CDS: 3.89 Total: -45.39 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -2.72 Total: -81.29 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.81 Total: -9.52 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -69.08 2.51 -66.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000484649499.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.560 kcal (2) G-P(sol) polarization free energy of solvation -69.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds