Wall clock time and date at job start Tue Mar 31 2020 11:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38167 * 120.03008 * 2 1 4 4 C 1.38240 * 120.05457 * 180.29486 * 3 2 1 5 5 C 1.38294 * 120.11202 * 359.68561 * 4 3 2 6 6 C 1.38119 * 120.05564 * 0.03953 * 5 4 3 7 7 C 1.38720 * 120.02473 * 179.72546 * 2 1 3 8 8 O 1.35895 * 120.05860 * 359.97438 * 7 2 1 9 9 C 1.42891 * 117.00363 * 174.24119 * 8 7 2 10 10 H 1.09000 * 109.47205 * 324.96835 * 9 8 7 11 11 C 1.53000 * 109.47161 * 84.96291 * 9 8 7 12 12 C 1.53007 * 109.47098 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46998 * 300.00198 * 12 11 9 14 14 C 1.53001 * 109.47179 * 60.00304 * 13 12 11 15 15 C 1.52998 * 109.47568 * 204.96675 * 9 8 7 16 16 H 1.09001 * 109.47212 * 299.99792 * 15 9 8 17 17 N 1.46900 * 109.47141 * 60.00106 * 15 9 8 18 18 C 1.46900 * 111.00052 * 205.00515 * 17 15 9 19 19 C 1.52999 * 109.47099 * 179.97438 * 18 17 15 20 20 C 1.53001 * 109.47148 * 179.97438 * 19 18 17 21 21 C 1.50700 * 109.47224 * 179.97438 * 20 19 18 22 22 H 1.07998 * 120.00157 * 0.02562 * 21 20 19 23 23 C 1.37875 * 119.99862 * 180.02562 * 21 20 19 24 24 N 1.31517 * 120.00102 * 180.02562 * 23 21 20 25 25 Si 1.86805 * 120.00375 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.46984 * 90.00026 * 25 23 21 27 27 H 1.48494 * 109.47140 * 210.00434 * 25 23 21 28 28 H 1.48503 * 109.46837 * 330.00592 * 25 23 21 29 29 H 1.08996 * 109.47070 * 270.27390 * 1 2 3 30 30 H 1.09001 * 109.46815 * 30.27759 * 1 2 3 31 31 H 1.09004 * 109.46838 * 150.27556 * 1 2 3 32 32 H 1.07991 * 119.96946 * 359.97438 * 3 2 1 33 33 H 1.07997 * 119.94652 * 179.69690 * 4 3 2 34 34 H 1.08000 * 119.97317 * 180.02562 * 5 4 3 35 35 H 1.07998 * 120.02911 * 179.97438 * 6 5 4 36 36 H 1.09001 * 109.47430 * 300.00304 * 11 9 8 37 37 H 1.09001 * 109.46914 * 60.00639 * 11 9 8 38 38 H 1.09006 * 109.46826 * 180.02562 * 12 11 9 39 39 H 1.09001 * 109.46799 * 60.00467 * 12 11 9 40 40 H 1.09001 * 109.47565 * 299.99800 * 13 12 11 41 41 H 1.09005 * 109.46376 * 180.02562 * 13 12 11 42 42 H 1.08997 * 109.46555 * 179.97438 * 14 13 12 43 43 H 1.09000 * 109.46986 * 59.99779 * 14 13 12 44 44 H 1.00905 * 110.99761 * 328.95048 * 17 15 9 45 45 H 1.09003 * 109.46621 * 299.99324 * 18 17 15 46 46 H 1.09002 * 109.47368 * 59.99170 * 18 17 15 47 47 H 1.09003 * 109.46844 * 299.99202 * 19 18 17 48 48 H 1.08995 * 109.47375 * 59.99980 * 19 18 17 49 49 H 1.09002 * 109.47211 * 299.99870 * 20 19 18 50 50 H 1.09002 * 109.47116 * 59.99309 * 20 19 18 51 51 H 0.96992 * 120.00188 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1968 -0.0062 5 6 4.2752 0.0008 -0.0058 6 6 3.5886 -1.1977 0.0000 7 6 2.2011 -1.2010 0.0058 8 8 1.5234 -2.3789 0.0119 9 6 2.2976 -3.5736 -0.1101 10 1 3.1464 -3.3908 -0.7691 11 6 2.8054 -3.9955 1.2701 12 6 3.6350 -5.2745 1.1393 13 6 2.7656 -6.3886 0.5532 14 6 2.2579 -5.9667 -0.8271 15 6 1.4278 -4.6876 -0.6960 16 1 0.5791 -4.8705 -0.0370 17 7 0.9404 -4.2825 -2.0213 18 6 -0.3068 -4.9811 -2.3597 19 6 -0.7826 -4.5338 -3.7433 20 6 -2.0813 -5.2619 -4.0960 21 6 -2.5503 -4.8208 -5.4585 22 1 -1.9792 -4.0942 -6.0172 23 6 -3.7087 -5.3449 -5.9918 24 7 -4.1179 -4.9604 -7.1811 25 14 -4.6964 -6.6022 -5.0258 26 1 -5.6969 -5.9023 -4.1805 27 1 -5.3949 -7.5129 -5.9681 28 1 -3.7826 -7.3908 -4.1608 29 1 -0.3633 0.0049 1.0276 30 1 -0.3633 0.8875 -0.5182 31 1 -0.3633 -0.8925 -0.5096 32 1 1.6585 2.1314 -0.0004 33 1 4.1195 2.1328 -0.0111 34 1 5.3552 0.0039 -0.0102 35 1 4.1313 -2.1314 -0.0002 36 1 3.4252 -3.2019 1.6875 37 1 1.9567 -4.1785 1.9291 38 1 3.9964 -5.5753 2.1228 39 1 4.4838 -5.0911 0.4804 40 1 1.9168 -6.5720 1.2121 41 1 3.3566 -7.2999 0.4605 42 1 1.6389 -6.7607 -1.2448 43 1 3.1067 -5.7835 -1.4860 44 1 0.8195 -3.2820 -2.0718 45 1 -0.1304 -6.0568 -2.3659 46 1 -1.0696 -4.7423 -1.6186 47 1 -0.9591 -3.4582 -3.7365 48 1 -0.0200 -4.7723 -4.4845 49 1 -1.9045 -6.3374 -4.1028 50 1 -2.8442 -5.0238 -3.3547 51 1 -4.9326 -5.3293 -7.5564 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000484649500.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:12 Heat of formation + Delta-G solvation = -62.676887 kcal Electronic energy + Delta-G solvation = -26901.723784 eV Core-core repulsion = 23377.919285 eV Total energy + Delta-G solvation = -3523.804499 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.65050 -39.75145 -37.80531 -36.96423 -35.21887 -33.74098 -33.38745 -31.32155 -30.87695 -30.03780 -27.73825 -27.57824 -24.48694 -24.29244 -22.79764 -22.48138 -22.16471 -21.85363 -20.70497 -19.00113 -18.89888 -17.52332 -16.70746 -16.63920 -16.53496 -16.30697 -15.95793 -15.61223 -15.38286 -15.11956 -14.99586 -14.81350 -14.35503 -14.14582 -14.11419 -14.02774 -13.83355 -13.56525 -13.40001 -13.18514 -13.01228 -12.76067 -12.50954 -12.49856 -12.28589 -12.20796 -12.14962 -11.82201 -11.72937 -11.68869 -11.55582 -11.41363 -11.40815 -11.28795 -10.99992 -10.77465 -9.74483 -9.43288 -9.04507 -8.30296 -6.34821 0.38934 0.51194 1.34770 1.36980 1.49425 2.15733 2.35629 2.82674 3.04010 3.04823 3.54009 3.84265 3.87329 3.89344 3.95281 4.12529 4.16612 4.17896 4.20301 4.22446 4.34093 4.36264 4.41705 4.46442 4.48981 4.64247 4.67655 4.75442 4.77427 4.79450 4.81209 4.87509 4.95736 4.97382 5.00646 5.08749 5.13373 5.15050 5.23277 5.30386 5.30873 5.42917 5.45353 5.49709 5.54992 5.58295 5.61986 5.64923 5.91756 6.05620 6.28201 6.36557 6.48539 6.73137 7.29667 8.86868 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012019 B = 0.003103 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.023177 B = 9020.026818 C =10722.564826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.140 4.140 3 C -0.091 4.091 4 C -0.160 4.160 5 C -0.092 4.092 6 C -0.212 4.212 7 C 0.113 3.887 8 O -0.324 6.324 9 C 0.088 3.912 10 H 0.080 0.920 11 C -0.135 4.135 12 C -0.111 4.111 13 C -0.119 4.119 14 C -0.103 4.103 15 C 0.096 3.904 16 H 0.043 0.957 17 N -0.688 5.688 18 C 0.073 3.927 19 C -0.089 4.089 20 C -0.008 4.008 21 C -0.534 4.534 22 H 0.028 0.972 23 C 0.002 3.998 24 N -0.953 5.953 25 Si 0.954 3.046 26 H -0.266 1.266 27 H -0.282 1.282 28 H -0.245 1.245 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.138 0.862 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.340 0.660 45 H 0.074 0.926 46 H 0.026 0.974 47 H 0.041 0.959 48 H 0.049 0.951 49 H 0.022 0.978 50 H 0.017 0.983 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.847 5.608 23.795 31.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.140 4.140 3 C -0.109 4.109 4 C -0.178 4.178 5 C -0.110 4.110 6 C -0.231 4.231 7 C 0.068 3.932 8 O -0.238 6.238 9 C 0.032 3.968 10 H 0.098 0.902 11 C -0.174 4.174 12 C -0.149 4.149 13 C -0.157 4.157 14 C -0.142 4.142 15 C -0.014 4.014 16 H 0.061 0.939 17 N -0.319 5.319 18 C -0.056 4.056 19 C -0.127 4.127 20 C -0.046 4.046 21 C -0.572 4.572 22 H 0.046 0.954 23 C -0.195 4.195 24 N -0.594 5.594 25 Si 0.777 3.223 26 H -0.191 1.191 27 H -0.208 1.208 28 H -0.168 1.168 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.162 0.838 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.156 0.844 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.159 0.841 45 H 0.092 0.908 46 H 0.044 0.956 47 H 0.059 0.941 48 H 0.068 0.932 49 H 0.040 0.960 50 H 0.035 0.965 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 19.908 5.093 23.348 31.103 hybrid contribution -1.356 0.152 0.081 1.367 sum 18.552 5.245 23.430 30.342 Atomic orbital electron populations 1.20583 0.90530 1.02588 1.02315 1.19580 0.96959 0.91104 1.06380 1.21182 0.94823 0.96960 0.97953 1.21382 0.94101 0.99136 1.03156 1.21274 1.01025 0.91540 0.97147 1.21480 0.92633 1.00489 1.08491 1.19058 0.91177 0.85558 0.97435 1.86049 1.37211 1.12829 1.87754 1.22686 0.94061 0.82067 0.97993 0.90171 1.22052 1.00732 0.99278 0.95301 1.21500 0.97860 0.93130 1.02370 1.21583 0.99925 0.98948 0.95196 1.21535 0.99497 0.94928 0.98201 1.21656 0.96711 0.94416 0.88644 0.93912 1.60588 1.31261 1.11698 1.28395 1.21912 0.89299 0.99003 0.95418 1.21250 0.96768 0.98956 0.95765 1.19470 0.94477 0.96306 0.94337 1.21504 1.08459 1.24578 1.02696 0.95365 1.26077 0.98626 0.98887 0.95895 1.70077 1.24578 1.46011 1.18689 0.85598 0.78885 0.79048 0.78750 1.19147 1.20790 1.16829 0.91058 0.90587 0.92999 0.83765 0.83638 0.83587 0.84405 0.90640 0.91436 0.89735 0.90976 0.91882 0.89989 0.91874 0.91152 0.84129 0.90794 0.95586 0.94055 0.93171 0.95960 0.96507 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.25 9.79 71.24 0.70 -1.55 16 2 C -0.14 -3.16 5.89 -19.77 -0.12 -3.27 16 3 C -0.09 -1.68 9.70 22.25 0.22 -1.46 16 4 C -0.16 -2.57 10.04 22.28 0.22 -2.35 16 5 C -0.09 -1.51 10.04 22.25 0.22 -1.29 16 6 C -0.21 -4.14 8.24 22.36 0.18 -3.96 16 7 C 0.11 2.64 6.57 22.51 0.15 2.79 16 8 O -0.32 -8.02 7.99 -92.37 -0.74 -8.76 16 9 C 0.09 1.82 1.66 30.59 0.05 1.87 16 10 H 0.08 1.65 6.31 -2.39 -0.02 1.64 16 11 C -0.14 -2.15 5.18 30.60 0.16 -1.99 16 12 C -0.11 -1.36 5.92 30.60 0.18 -1.18 16 13 C -0.12 -1.68 5.92 30.59 0.18 -1.50 16 14 C -0.10 -2.04 5.43 30.61 0.17 -1.87 16 15 C 0.10 2.23 2.22 44.93 0.10 2.33 16 16 H 0.04 1.08 7.80 -2.39 -0.02 1.06 16 17 N -0.69 -20.08 6.31 -491.48 -3.10 -23.18 16 18 C 0.07 2.41 5.48 86.30 0.47 2.88 16 19 C -0.09 -3.72 5.41 30.59 0.17 -3.55 16 20 C -0.01 -0.39 4.04 29.85 0.12 -0.27 16 21 C -0.53 -32.20 9.66 25.60 0.25 -31.95 16 22 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 23 C 0.00 0.10 5.47 84.65 0.46 0.56 16 24 N -0.95 -61.47 13.96 21.45 0.30 -61.17 16 25 Si 0.95 45.33 27.47 68.60 1.88 47.21 16 26 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 27 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 28 H -0.24 -10.74 6.54 99.48 0.65 -10.09 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 1.42 8.09 -2.39 -0.02 1.40 16 31 H 0.05 1.32 7.53 -2.39 -0.02 1.30 16 32 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 33 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 35 H 0.14 2.29 5.43 -2.91 -0.02 2.28 16 36 H 0.07 1.13 6.91 -2.39 -0.02 1.12 16 37 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 39 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.08 0.96 8.14 -2.38 -0.02 0.95 16 42 H 0.06 1.36 7.46 -2.39 -0.02 1.35 16 43 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.34 10.48 7.64 -89.69 -0.69 9.79 16 45 H 0.07 2.36 7.44 -2.39 -0.02 2.34 16 46 H 0.03 0.86 8.06 -2.39 -0.02 0.84 16 47 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 49 H 0.02 1.05 7.20 -2.39 -0.02 1.03 16 50 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 51 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -69.62 394.34 2.38 -67.25 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 0.15 Total: 24.42 kcal Atomic # 6 Polarization: -49.64 SS G_CDS: 3.88 Total: -45.76 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -2.80 Total: -84.36 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -0.74 Total: -8.76 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.88 Total: 47.21 kcal Total: -69.62 2.38 -67.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000484649500.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.569 kcal (2) G-P(sol) polarization free energy of solvation -69.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds