Wall clock time and date at job start Tue Mar 31 2020 11:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38255 * 119.99685 * 2 1 4 4 C 1.38212 * 119.99852 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99903 * 0.02562 * 4 3 2 6 6 C 1.38218 * 120.00342 * 359.95246 * 5 4 3 7 7 C 1.38207 * 119.99886 * 179.97438 * 2 1 3 8 8 C 1.50700 * 120.00363 * 359.97438 * 7 2 1 9 9 C 1.52997 * 109.47239 * 85.01706 * 8 7 2 10 10 C 1.50700 * 109.47239 * 180.02562 * 9 8 7 11 11 O 1.21290 * 120.00075 * 354.42996 * 10 9 8 12 12 N 1.34774 * 120.00192 * 174.42527 * 10 9 8 13 13 C 1.46501 * 119.99948 * 185.44290 * 12 10 9 14 14 C 1.50700 * 109.46899 * 90.00290 * 13 12 10 15 15 H 1.08004 * 120.00127 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00226 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99484 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99980 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47188 * 90.00296 * 18 16 14 20 20 H 1.48510 * 109.46865 * 210.00029 * 18 16 14 21 21 H 1.48500 * 109.47303 * 329.99733 * 18 16 14 22 22 C 1.46498 * 119.99996 * 5.44654 * 12 10 9 23 23 C 1.53005 * 109.47196 * 95.81168 * 22 12 10 24 24 C 1.52997 * 109.46943 * 54.26367 * 23 22 12 25 25 C 1.53001 * 109.46861 * 174.26548 * 23 22 12 26 26 C 1.53002 * 109.46935 * 294.26183 * 23 22 12 27 27 H 1.09004 * 109.46670 * 270.02028 * 1 2 3 28 28 H 1.09000 * 109.47146 * 30.02237 * 1 2 3 29 29 H 1.09000 * 109.47423 * 150.02027 * 1 2 3 30 30 H 1.07996 * 120.00680 * 359.97438 * 3 2 1 31 31 H 1.08001 * 120.00582 * 179.97438 * 4 3 2 32 32 H 1.07999 * 120.00171 * 179.97438 * 5 4 3 33 33 H 1.07996 * 120.00379 * 180.32406 * 6 5 4 34 34 H 1.09001 * 109.47313 * 205.02527 * 8 7 2 35 35 H 1.09002 * 109.46738 * 325.02152 * 8 7 2 36 36 H 1.08994 * 109.47897 * 300.00350 * 9 8 7 37 37 H 1.09002 * 109.46891 * 60.00539 * 9 8 7 38 38 H 1.08997 * 109.47180 * 209.99526 * 13 12 10 39 39 H 1.08988 * 109.47576 * 330.00469 * 13 12 10 40 40 H 0.97001 * 119.99978 * 179.97438 * 17 16 14 41 41 H 1.08998 * 109.47512 * 215.81333 * 22 12 10 42 42 H 1.08999 * 109.46882 * 335.81062 * 22 12 10 43 43 H 1.08999 * 109.47229 * 59.99976 * 24 23 22 44 44 H 1.09001 * 109.46715 * 180.02562 * 24 23 22 45 45 H 1.09000 * 109.47192 * 300.00139 * 24 23 22 46 46 H 1.08997 * 109.47090 * 60.00002 * 25 23 22 47 47 H 1.09005 * 109.46500 * 180.02562 * 25 23 22 48 48 H 1.08999 * 109.47032 * 299.99853 * 25 23 22 49 49 H 1.09002 * 109.46771 * 64.13268 * 26 23 22 50 50 H 1.08998 * 109.47066 * 184.13019 * 26 23 22 51 51 H 1.08993 * 109.47382 * 304.13554 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5807 -1.1970 0.0010 7 6 2.1980 -1.1969 0.0005 8 6 1.4446 -2.5021 0.0017 9 6 1.0805 -2.8821 -1.4349 10 6 0.3266 -4.1869 -1.4337 11 8 0.1900 -4.8074 -0.4005 12 7 -0.1961 -4.6643 -2.5806 13 6 -1.0295 -5.8690 -2.5601 14 6 -2.4714 -5.4789 -2.3605 15 1 -2.7402 -4.4378 -2.2595 16 6 -3.4477 -6.4512 -2.3080 17 7 -3.1204 -7.7189 -2.4315 18 14 -5.2350 -5.9676 -2.0613 19 1 -5.8751 -5.7473 -3.3830 20 1 -5.9470 -7.0540 -1.3414 21 1 -5.3040 -4.7171 -1.2633 22 6 0.0692 -3.9786 -3.8477 23 6 1.2487 -4.6503 -4.5539 24 6 0.9697 -6.1474 -4.7007 25 6 1.4352 -4.0279 -5.9391 26 6 2.5205 -4.4470 -3.7280 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8901 -0.5135 30 1 1.6583 2.1327 -0.0004 31 1 4.1204 2.1327 0.0001 32 1 5.3517 0.0000 0.0005 33 1 4.1206 -2.1322 0.0063 34 1 2.0695 -3.2820 0.4367 35 1 0.5339 -2.3953 0.5911 36 1 0.4556 -2.1022 -1.8699 37 1 1.9912 -2.9889 -2.0243 38 1 -0.9244 -6.3996 -3.5064 39 1 -0.7120 -6.5167 -1.7431 40 1 -3.8072 -8.4030 -2.3942 41 1 -0.8145 -4.0346 -4.4832 42 1 0.3102 -2.9337 -3.6518 43 1 0.0636 -6.2922 -5.2891 44 1 1.8101 -6.6260 -5.2034 45 1 0.8367 -6.5907 -3.7138 46 1 1.6339 -2.9613 -5.8345 47 1 2.2752 -4.5068 -6.4424 48 1 0.5291 -4.1727 -6.5275 49 1 2.4154 -4.9533 -2.7685 50 1 3.3731 -4.8614 -4.2660 51 1 2.6790 -3.3816 -3.5612 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494444074.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:24 Heat of formation + Delta-G solvation = -36.039096 kcal Electronic energy + Delta-G solvation = -27737.366556 eV Core-core repulsion = 24214.717158 eV Total energy + Delta-G solvation = -3522.649398 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.91357 -39.20201 -37.01857 -34.27414 -33.68384 -32.46341 -32.31281 -29.99128 -27.89447 -27.17039 -26.90259 -26.76002 -25.51727 -24.35715 -22.39718 -21.81394 -20.42371 -19.23046 -17.80581 -16.67944 -16.61122 -16.03239 -15.85114 -15.36934 -14.98184 -14.83145 -14.37450 -14.04400 -13.87217 -13.71737 -13.51915 -13.20602 -12.95775 -12.74616 -12.53596 -12.44793 -12.26546 -12.10474 -12.04277 -11.77318 -11.58156 -11.36700 -11.30175 -11.25734 -11.09011 -10.95445 -10.82430 -10.74641 -10.57187 -10.54387 -10.35435 -10.13350 -10.08087 -9.51557 -8.93018 -8.77965 -8.52259 -8.39288 -7.55239 -6.01974 -4.06126 1.31591 1.34835 3.30317 3.37131 3.40294 3.49727 3.68945 4.03121 4.46247 4.76732 4.78481 4.91631 4.97536 5.04325 5.06348 5.15744 5.25256 5.30068 5.31469 5.34420 5.48295 5.52449 5.63450 5.64513 5.66886 5.73863 5.74732 5.82170 5.88350 5.92651 6.00640 6.04651 6.05131 6.15469 6.19822 6.23996 6.25962 6.35154 6.41194 6.45090 6.45551 6.48332 6.61417 6.71719 6.80484 6.99469 7.16173 7.50213 7.61796 7.95379 8.28399 8.50080 8.93535 9.16351 9.58705 11.05736 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012165 B = 0.003975 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.103100 B = 7042.657116 C = 8435.225228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.080 4.080 3 C -0.121 4.121 4 C -0.126 4.126 5 C -0.127 4.127 6 C -0.114 4.114 7 C -0.075 4.075 8 C -0.067 4.067 9 C -0.145 4.145 10 C 0.507 3.493 11 O -0.546 6.546 12 N -0.593 5.593 13 C 0.238 3.762 14 C -0.526 4.526 15 H 0.055 0.945 16 C 0.061 3.939 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.120 3.880 23 C -0.086 4.086 24 C -0.143 4.143 25 C -0.137 4.137 26 C -0.143 4.143 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.045 0.955 39 H 0.041 0.959 40 H 0.262 0.738 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.043 0.957 45 H 0.071 0.929 46 H 0.052 0.948 47 H 0.053 0.947 48 H 0.056 0.944 49 H 0.057 0.943 50 H 0.051 0.949 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.594 15.085 -2.035 20.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.080 4.080 3 C -0.139 4.139 4 C -0.144 4.144 5 C -0.145 4.145 6 C -0.132 4.132 7 C -0.075 4.075 8 C -0.105 4.105 9 C -0.185 4.185 10 C 0.294 3.706 11 O -0.424 6.424 12 N -0.323 5.323 13 C 0.119 3.881 14 C -0.565 4.565 15 H 0.074 0.926 16 C -0.140 4.140 17 N -0.534 5.534 18 Si 0.723 3.277 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.005 4.005 23 C -0.088 4.088 24 C -0.200 4.200 25 C -0.195 4.195 26 C -0.200 4.200 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.062 0.938 45 H 0.090 0.910 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.076 0.924 50 H 0.070 0.930 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.410 14.540 -1.492 19.835 hybrid contribution -1.013 0.290 0.001 1.054 sum 12.397 14.829 -1.492 19.386 Atomic orbital electron populations 1.20914 0.91177 1.03186 1.02641 1.19838 0.96138 0.92578 0.99467 1.21006 0.94244 0.97361 1.01314 1.21069 0.94304 0.97880 1.01185 1.21089 0.99626 0.92584 1.01166 1.21089 0.93664 0.98137 1.00269 1.19901 0.93659 0.94814 0.99128 1.20361 1.00618 0.93100 0.96418 1.21949 1.01624 0.96682 0.98205 1.20302 0.79686 0.86669 0.83945 1.90660 1.59976 1.60088 1.31696 1.48138 1.49382 1.29648 1.05183 1.19486 0.88330 0.81555 0.98760 1.21479 0.91894 0.93287 1.49826 0.92639 1.24912 0.99072 0.94825 0.95235 1.69928 1.33563 0.99546 1.50315 0.86546 0.84785 0.78250 0.78126 1.20704 1.21137 1.19955 1.21534 0.97345 0.95070 0.86512 1.20991 0.95642 0.97014 0.95120 1.22044 1.00684 0.94206 1.03049 1.21804 1.01643 1.00097 0.95930 1.22020 0.96788 1.00860 1.00308 0.91046 0.91677 0.90672 0.86350 0.86476 0.86392 0.86058 0.90283 0.90150 0.89717 0.88709 0.93733 0.94084 0.92798 0.90318 0.91519 0.92268 0.93825 0.91003 0.92937 0.92821 0.92457 0.92381 0.93000 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 9.22 36.01 0.33 -1.03 16 2 C -0.08 -0.95 5.88 -104.63 -0.62 -1.57 16 3 C -0.12 -1.27 9.70 -39.58 -0.38 -1.66 16 4 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 5 C -0.13 -1.28 10.05 -39.58 -0.40 -1.68 16 6 C -0.11 -1.29 9.68 -39.58 -0.38 -1.68 16 7 C -0.07 -0.94 5.13 -104.62 -0.54 -1.48 16 8 C -0.07 -0.97 3.95 -27.88 -0.11 -1.08 16 9 C -0.14 -2.16 3.85 -27.88 -0.11 -2.27 16 10 C 0.51 10.27 6.40 -10.99 -0.07 10.20 16 11 O -0.55 -13.49 15.54 5.55 0.09 -13.40 16 12 N -0.59 -12.12 2.00 -175.06 -0.35 -12.47 16 13 C 0.24 6.05 3.93 -5.19 -0.02 6.03 16 14 C -0.53 -14.74 9.39 -34.44 -0.32 -15.06 16 15 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 16 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 18 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.12 1.93 4.58 -4.04 -0.02 1.91 16 23 C -0.09 -1.20 0.85 -154.51 -0.13 -1.33 16 24 C -0.14 -2.27 6.98 37.16 0.26 -2.01 16 25 C -0.14 -1.54 8.47 37.16 0.31 -1.23 16 26 C -0.14 -1.83 6.84 37.16 0.25 -1.58 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 29 H 0.07 0.93 5.43 -51.93 -0.28 0.65 16 30 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.08 1.19 7.95 -51.93 -0.41 0.77 16 35 H 0.08 1.25 6.99 -51.93 -0.36 0.89 16 36 H 0.08 1.18 6.11 -51.93 -0.32 0.86 16 37 H 0.09 1.25 4.67 -51.93 -0.24 1.01 16 38 H 0.04 1.13 5.32 -51.93 -0.28 0.85 16 39 H 0.04 1.20 7.35 -51.94 -0.38 0.82 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.08 1.34 8.11 -51.93 -0.42 0.92 16 42 H 0.07 0.92 6.11 -51.93 -0.32 0.60 16 43 H 0.06 0.99 7.72 -51.93 -0.40 0.59 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 1.35 5.76 -51.93 -0.30 1.06 16 46 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.06 0.87 6.74 -51.93 -0.35 0.52 16 50 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.05 0.62 6.49 -51.93 -0.34 0.28 16 LS Contribution 392.13 15.07 5.91 5.91 Total: -1.00 -32.02 392.13 -9.67 -41.68 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -8.59 Total: 2.65 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -2.43 Total: -15.49 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.39 Total: -38.13 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.09 Total: -13.40 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.02 -9.67 -41.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494444074.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.643 kcal (2) G-P(sol) polarization free energy of solvation -32.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds