Wall clock time and date at job start Tue Mar 31 2020 11:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38255 * 119.99685 * 2 1 4 4 C 1.38212 * 119.99852 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99903 * 0.02562 * 4 3 2 6 6 C 1.38218 * 120.00342 * 359.95246 * 5 4 3 7 7 C 1.38207 * 119.99886 * 179.97438 * 2 1 3 8 8 C 1.50700 * 120.00363 * 359.97438 * 7 2 1 9 9 C 1.52997 * 109.47239 * 85.01706 * 8 7 2 10 10 C 1.50700 * 109.47239 * 180.02562 * 9 8 7 11 11 O 1.21290 * 120.00075 * 354.42996 * 10 9 8 12 12 N 1.34774 * 120.00192 * 174.42527 * 10 9 8 13 13 C 1.46501 * 119.99948 * 185.44290 * 12 10 9 14 14 C 1.50700 * 109.46899 * 90.00290 * 13 12 10 15 15 H 1.08004 * 120.00127 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00226 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99484 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99980 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47188 * 90.00296 * 18 16 14 20 20 H 1.48510 * 109.46865 * 210.00029 * 18 16 14 21 21 H 1.48500 * 109.47303 * 329.99733 * 18 16 14 22 22 C 1.46498 * 119.99996 * 5.44654 * 12 10 9 23 23 C 1.53005 * 109.47196 * 95.81168 * 22 12 10 24 24 C 1.52997 * 109.46943 * 54.26367 * 23 22 12 25 25 C 1.53001 * 109.46861 * 174.26548 * 23 22 12 26 26 C 1.53002 * 109.46935 * 294.26183 * 23 22 12 27 27 H 1.09004 * 109.46670 * 270.02028 * 1 2 3 28 28 H 1.09000 * 109.47146 * 30.02237 * 1 2 3 29 29 H 1.09000 * 109.47423 * 150.02027 * 1 2 3 30 30 H 1.07996 * 120.00680 * 359.97438 * 3 2 1 31 31 H 1.08001 * 120.00582 * 179.97438 * 4 3 2 32 32 H 1.07999 * 120.00171 * 179.97438 * 5 4 3 33 33 H 1.07996 * 120.00379 * 180.32406 * 6 5 4 34 34 H 1.09001 * 109.47313 * 205.02527 * 8 7 2 35 35 H 1.09002 * 109.46738 * 325.02152 * 8 7 2 36 36 H 1.08994 * 109.47897 * 300.00350 * 9 8 7 37 37 H 1.09002 * 109.46891 * 60.00539 * 9 8 7 38 38 H 1.08997 * 109.47180 * 209.99526 * 13 12 10 39 39 H 1.08988 * 109.47576 * 330.00469 * 13 12 10 40 40 H 0.97001 * 119.99978 * 179.97438 * 17 16 14 41 41 H 1.08998 * 109.47512 * 215.81333 * 22 12 10 42 42 H 1.08999 * 109.46882 * 335.81062 * 22 12 10 43 43 H 1.08999 * 109.47229 * 59.99976 * 24 23 22 44 44 H 1.09001 * 109.46715 * 180.02562 * 24 23 22 45 45 H 1.09000 * 109.47192 * 300.00139 * 24 23 22 46 46 H 1.08997 * 109.47090 * 60.00002 * 25 23 22 47 47 H 1.09005 * 109.46500 * 180.02562 * 25 23 22 48 48 H 1.08999 * 109.47032 * 299.99853 * 25 23 22 49 49 H 1.09002 * 109.46771 * 64.13268 * 26 23 22 50 50 H 1.08998 * 109.47066 * 184.13019 * 26 23 22 51 51 H 1.08993 * 109.47382 * 304.13554 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5807 -1.1970 0.0010 7 6 2.1980 -1.1969 0.0005 8 6 1.4446 -2.5021 0.0017 9 6 1.0805 -2.8821 -1.4349 10 6 0.3266 -4.1869 -1.4337 11 8 0.1900 -4.8074 -0.4005 12 7 -0.1961 -4.6643 -2.5806 13 6 -1.0295 -5.8690 -2.5601 14 6 -2.4714 -5.4789 -2.3605 15 1 -2.7402 -4.4378 -2.2595 16 6 -3.4477 -6.4512 -2.3080 17 7 -3.1204 -7.7189 -2.4315 18 14 -5.2350 -5.9676 -2.0613 19 1 -5.8751 -5.7473 -3.3830 20 1 -5.9470 -7.0540 -1.3414 21 1 -5.3040 -4.7171 -1.2633 22 6 0.0692 -3.9786 -3.8477 23 6 1.2487 -4.6503 -4.5539 24 6 0.9697 -6.1474 -4.7007 25 6 1.4352 -4.0279 -5.9391 26 6 2.5205 -4.4470 -3.7280 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8901 -0.5135 30 1 1.6583 2.1327 -0.0004 31 1 4.1204 2.1327 0.0001 32 1 5.3517 0.0000 0.0005 33 1 4.1206 -2.1322 0.0063 34 1 2.0695 -3.2820 0.4367 35 1 0.5339 -2.3953 0.5911 36 1 0.4556 -2.1022 -1.8699 37 1 1.9912 -2.9889 -2.0243 38 1 -0.9244 -6.3996 -3.5064 39 1 -0.7120 -6.5167 -1.7431 40 1 -3.8072 -8.4030 -2.3942 41 1 -0.8145 -4.0346 -4.4832 42 1 0.3102 -2.9337 -3.6518 43 1 0.0636 -6.2922 -5.2891 44 1 1.8101 -6.6260 -5.2034 45 1 0.8367 -6.5907 -3.7138 46 1 1.6339 -2.9613 -5.8345 47 1 2.2752 -4.5068 -6.4424 48 1 0.5291 -4.1727 -6.5275 49 1 2.4154 -4.9533 -2.7685 50 1 3.3731 -4.8614 -4.2660 51 1 2.6790 -3.3816 -3.5612 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000494444074.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:23 Heat of formation + Delta-G solvation = -51.873698 kcal Electronic energy + Delta-G solvation = -27738.053196 eV Core-core repulsion = 24214.717158 eV Total energy + Delta-G solvation = -3523.336038 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.24464 -40.27900 -38.43473 -35.77412 -35.05646 -34.29861 -33.30271 -31.21485 -29.51823 -28.21573 -28.09402 -27.79005 -26.94489 -25.79863 -24.03645 -22.75619 -21.34571 -20.61299 -19.24484 -18.67782 -17.97287 -17.18140 -17.09746 -16.88960 -16.34809 -16.12196 -15.68719 -15.22645 -15.07446 -14.94677 -14.58721 -14.46583 -14.22515 -13.96293 -13.83300 -13.69469 -13.58036 -13.35961 -13.09830 -13.00075 -12.95437 -12.79402 -12.64263 -12.61666 -12.49294 -12.43354 -12.17770 -12.01908 -11.92810 -11.72018 -11.68073 -11.63579 -11.48911 -11.37259 -10.59808 -10.55049 -9.64213 -9.41252 -9.31935 -8.20373 -6.34894 0.48395 0.54336 1.34987 1.37920 1.47946 1.87025 2.32499 2.48307 2.90802 3.08533 3.62222 3.87571 3.90738 3.92543 4.03244 4.08482 4.12043 4.14601 4.27275 4.34543 4.45638 4.53199 4.56700 4.62703 4.65302 4.77812 4.78731 4.82096 4.85974 4.93749 4.95999 4.98605 5.03118 5.07100 5.09399 5.12194 5.16958 5.22068 5.26872 5.29348 5.38018 5.38987 5.47818 5.54906 5.62047 5.66040 5.68129 5.83775 5.91706 6.11859 6.19568 6.73128 6.85549 7.30309 7.53495 8.85921 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012165 B = 0.003975 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.103100 B = 7042.657116 C = 8435.225228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.092 4.092 3 C -0.125 4.125 4 C -0.124 4.124 5 C -0.128 4.128 6 C -0.123 4.123 7 C -0.091 4.091 8 C -0.059 4.059 9 C -0.125 4.125 10 C 0.499 3.501 11 O -0.602 6.602 12 N -0.594 5.594 13 C 0.258 3.742 14 C -0.544 4.544 15 H 0.051 0.949 16 C 0.008 3.992 17 N -0.928 5.928 18 Si 0.964 3.036 19 H -0.263 1.263 20 H -0.282 1.282 21 H -0.273 1.273 22 C 0.114 3.886 23 C -0.082 4.082 24 C -0.139 4.139 25 C -0.130 4.130 26 C -0.139 4.139 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.139 0.861 31 H 0.145 0.855 32 H 0.142 0.858 33 H 0.126 0.874 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.102 0.898 37 H 0.119 0.881 38 H 0.041 0.959 39 H -0.011 1.011 40 H 0.266 0.734 41 H 0.067 0.933 42 H 0.099 0.901 43 H 0.043 0.957 44 H 0.064 0.936 45 H 0.030 0.970 46 H 0.074 0.926 47 H 0.068 0.932 48 H 0.053 0.947 49 H 0.027 0.973 50 H 0.070 0.930 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.877 18.601 -3.511 24.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.092 4.092 3 C -0.143 4.143 4 C -0.142 4.142 5 C -0.146 4.146 6 C -0.141 4.141 7 C -0.091 4.091 8 C -0.097 4.097 9 C -0.165 4.165 10 C 0.288 3.712 11 O -0.484 6.484 12 N -0.324 5.324 13 C 0.136 3.864 14 C -0.583 4.583 15 H 0.070 0.930 16 C -0.190 4.190 17 N -0.568 5.568 18 Si 0.789 3.211 19 H -0.188 1.188 20 H -0.208 1.208 21 H -0.198 1.198 22 C -0.009 4.009 23 C -0.083 4.083 24 C -0.197 4.197 25 C -0.188 4.188 26 C -0.196 4.196 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.075 0.925 30 H 0.157 0.843 31 H 0.162 0.838 32 H 0.160 0.840 33 H 0.144 0.856 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.120 0.880 37 H 0.137 0.863 38 H 0.059 0.941 39 H 0.007 0.993 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.117 0.883 43 H 0.062 0.938 44 H 0.083 0.917 45 H 0.050 0.950 46 H 0.093 0.907 47 H 0.087 0.913 48 H 0.073 0.927 49 H 0.047 0.953 50 H 0.089 0.911 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.712 18.087 -3.010 23.509 hybrid contribution -1.347 -0.819 0.480 1.648 sum 13.366 17.268 -2.530 21.983 Atomic orbital electron populations 1.20903 0.91207 1.03147 1.02585 1.19959 0.96342 0.92942 0.99995 1.21279 0.94861 0.97507 1.00661 1.21451 0.94204 0.98953 0.99558 1.21396 1.00929 0.92071 1.00159 1.21241 0.93214 0.99243 1.00406 1.19725 0.94181 0.93799 1.01415 1.20192 0.99769 0.94208 0.95512 1.21878 1.01832 0.93377 0.99368 1.21283 0.79162 0.87908 0.82822 1.90624 1.62117 1.61996 1.33676 1.48103 1.48538 1.28427 1.07300 1.18915 0.88162 0.82991 0.96294 1.21790 0.93300 0.93182 1.50001 0.93039 1.25819 1.03791 0.94716 0.94710 1.70056 1.35127 1.00622 1.50966 0.85470 0.79134 0.77808 0.78737 1.18821 1.20760 1.19765 1.21859 0.98097 0.96567 0.84385 1.20973 0.95088 0.95196 0.97044 1.21972 1.00894 0.96245 1.00549 1.21750 1.02190 1.01305 0.93506 1.21983 0.96711 1.02090 0.98775 0.91227 0.89823 0.92485 0.84341 0.83753 0.84024 0.85561 0.91763 0.92232 0.87962 0.86335 0.94148 0.99323 0.92535 0.91402 0.88309 0.93759 0.91669 0.95042 0.90717 0.91338 0.92740 0.95343 0.91109 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.59 9.22 71.24 0.66 -1.93 16 2 C -0.09 -2.03 5.88 -19.87 -0.12 -2.15 16 3 C -0.13 -2.24 9.70 22.27 0.22 -2.03 16 4 C -0.12 -1.97 10.05 22.27 0.22 -1.74 16 5 C -0.13 -2.17 10.05 22.27 0.22 -1.94 16 6 C -0.12 -2.58 9.68 22.27 0.22 -2.36 16 7 C -0.09 -2.20 5.13 -19.87 -0.10 -2.30 16 8 C -0.06 -1.74 3.95 29.85 0.12 -1.63 16 9 C -0.13 -3.71 3.85 29.85 0.11 -3.60 16 10 C 0.50 21.17 6.40 87.66 0.56 21.73 16 11 O -0.60 -32.01 15.54 -3.06 -0.05 -32.06 16 12 N -0.59 -25.38 2.00 -826.16 -1.65 -27.04 16 13 C 0.26 14.03 3.93 85.63 0.34 14.36 16 14 C -0.54 -31.80 9.39 25.60 0.24 -31.55 16 15 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 16 C 0.01 0.49 5.46 84.66 0.46 0.96 16 17 N -0.93 -56.89 13.29 21.45 0.28 -56.61 16 18 Si 0.96 45.49 29.54 68.60 2.03 47.52 16 19 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 21 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 22 C 0.11 3.60 4.58 86.38 0.40 3.99 16 23 C -0.08 -2.17 0.85 -52.18 -0.04 -2.21 16 24 C -0.14 -4.54 6.98 71.98 0.50 -4.04 16 25 C -0.13 -2.51 8.47 71.98 0.61 -1.90 16 26 C -0.14 -3.30 6.84 71.98 0.49 -2.80 16 27 H 0.07 1.46 8.14 -2.38 -0.02 1.45 16 28 H 0.08 1.41 8.09 -2.39 -0.02 1.39 16 29 H 0.06 1.40 5.43 -2.39 -0.01 1.38 16 30 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 31 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 32 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16 33 H 0.13 2.42 8.06 -2.91 -0.02 2.39 16 34 H 0.06 2.04 7.95 -2.39 -0.02 2.02 16 35 H 0.06 1.97 6.99 -2.39 -0.02 1.96 16 36 H 0.10 2.70 6.11 -2.39 -0.01 2.68 16 37 H 0.12 2.94 4.67 -2.39 -0.01 2.93 16 38 H 0.04 2.21 5.32 -2.39 -0.01 2.20 16 39 H -0.01 -0.73 7.35 -2.39 -0.02 -0.75 16 40 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 41 H 0.07 2.30 8.11 -2.39 -0.02 2.28 16 42 H 0.10 2.48 6.11 -2.39 -0.01 2.47 16 43 H 0.04 1.53 7.72 -2.39 -0.02 1.51 16 44 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.03 1.26 5.76 -2.39 -0.01 1.24 16 46 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 48 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.03 0.84 6.74 -2.39 -0.02 0.82 16 50 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 51 H 0.08 1.48 6.49 -2.39 -0.02 1.46 16 Total: -1.00 -74.80 392.13 6.61 -68.19 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.90 Total: 21.14 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: 5.11 Total: -21.14 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -1.37 Total: -83.64 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -0.05 Total: -32.06 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -74.80 6.61 -68.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494444074.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.315 kcal (2) G-P(sol) polarization free energy of solvation -74.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds